Wall clock time and date at job start Sun Mar 7 2021 08:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86302 * 109.47325 * 2 1 4 4 C 1.50696 * 109.47147 * 120.00482 * 2 1 3 5 5 C 1.34196 * 126.53852 * 254.97002 * 4 2 1 6 6 N 1.36866 * 109.96795 * 180.02562 * 5 4 2 7 7 C 1.37394 * 109.97890 * 0.27239 * 6 5 4 8 8 C 1.39336 * 133.24548 * 180.50887 * 7 6 5 9 9 C 1.36357 * 120.23409 * 179.60018 * 8 7 6 10 10 C 1.40166 * 120.66946 * 359.67228 * 9 8 7 11 11 C 1.47649 * 119.97038 * 180.02562 * 10 9 8 12 12 O 1.21586 * 119.99966 * 179.97438 * 11 10 9 13 13 N 1.34781 * 120.00408 * 359.97438 * 11 10 9 14 14 C 1.46496 * 120.00019 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46732 * 180.02562 * 14 13 11 16 16 F 1.39893 * 112.85264 * 48.80087 * 15 14 13 17 17 C 1.53785 * 113.61485 * 179.97438 * 15 14 13 18 18 C 1.53779 * 87.08180 * 139.97368 * 17 15 14 19 19 H 1.09009 * 113.60682 * 89.11662 * 18 17 15 20 20 C 1.52999 * 113.61713 * 219.93333 * 18 17 15 21 21 O 1.42905 * 109.47140 * 185.00637 * 20 18 17 22 22 C 1.53774 * 87.08549 * 334.56852 * 18 17 15 23 23 C 1.39187 * 120.05307 * 359.97438 * 10 9 8 24 24 C 1.39227 * 119.39666 * 0.02608 * 23 10 9 25 25 H 0.96706 * 114.00150 * 59.99581 * 1 2 3 26 26 H 1.09006 * 109.47069 * 240.00498 * 2 1 3 27 27 H 1.48496 * 109.99949 * 298.68377 * 3 2 1 28 28 H 1.48493 * 109.99888 * 60.00146 * 3 2 1 29 29 H 1.08002 * 125.01776 * 0.02562 * 5 4 2 30 30 H 0.97001 * 125.00715 * 179.97438 * 6 5 4 31 31 H 1.08001 * 119.88138 * 359.26533 * 8 7 6 32 32 H 1.08002 * 119.66010 * 179.69278 * 9 8 7 33 33 H 0.96999 * 119.99809 * 359.97438 * 13 11 10 34 34 H 1.09001 * 109.47257 * 299.99115 * 14 13 11 35 35 H 1.08997 * 109.47325 * 59.99987 * 14 13 11 36 36 H 1.08995 * 113.61751 * 254.53114 * 17 15 14 37 37 H 1.09009 * 113.60842 * 25.34811 * 17 15 14 38 38 H 1.09000 * 109.46740 * 305.00316 * 20 18 17 39 39 H 1.08995 * 109.47105 * 65.00766 * 20 18 17 40 40 H 0.96700 * 113.99859 * 179.97438 * 21 20 18 41 41 H 1.08995 * 113.61926 * 270.88372 * 22 18 17 42 42 H 1.08998 * 113.61900 * 139.97335 * 22 18 17 43 43 H 1.08003 * 120.30024 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.4612 -0.1388 2.3227 6 7 2.8036 -1.1007 3.2342 7 6 2.5014 -2.3459 2.7385 8 6 2.6346 -3.6351 3.2501 9 6 2.2311 -4.7105 2.5151 10 6 1.6721 -4.5369 1.2416 11 6 1.2399 -5.7123 0.4593 12 8 0.7545 -5.5623 -0.6453 13 7 1.3835 -6.9514 0.9697 14 6 0.9552 -8.1175 0.1933 15 6 1.2265 -9.3919 0.9954 16 9 0.7559 -9.3164 2.3106 17 6 0.8099 -10.6797 0.2654 18 6 2.0975 -11.3150 0.8163 19 1 1.9704 -11.7825 1.7928 20 6 2.8120 -12.2215 -0.1880 21 8 3.9248 -12.8531 0.4482 22 6 2.6766 -9.8921 0.8853 23 6 1.5230 -3.2575 0.7142 24 6 1.9341 -2.1577 1.4624 25 1 -0.3934 0.4418 -0.7651 26 1 1.7923 -0.5138 -0.8901 27 1 1.5879 2.4585 -1.2242 28 1 1.5616 2.4678 1.2085 29 1 2.5974 0.9235 2.4620 30 1 3.2047 -0.9288 4.1005 31 1 3.0638 -3.7835 4.2300 32 1 2.3432 -5.7060 2.9187 33 1 1.7711 -7.0711 1.8508 34 1 -0.1115 -8.0418 -0.0177 35 1 1.5095 -8.1532 -0.7446 36 1 -0.1018 -11.1292 0.6588 37 1 0.7995 -10.5823 -0.8202 38 1 2.1192 -12.9823 -0.5475 39 1 3.1649 -11.6248 -1.0290 40 1 4.4252 -13.4444 -0.1307 41 1 3.1778 -9.5797 -0.0308 42 1 3.2718 -9.7057 1.7792 43 1 1.0924 -3.1191 -0.2666 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_13287722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:04 Heat of formation + Delta-G solvation = -79.313228 kcal Electronic energy + Delta-G solvation = -28047.542311 eV Core-core repulsion = 23781.896241 eV Total energy + Delta-G solvation = -4265.646070 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.88093 -42.46877 -40.90891 -39.79618 -37.99531 -37.54689 -37.17911 -35.71086 -33.40137 -31.43168 -30.70783 -29.77312 -27.28168 -26.96017 -26.45066 -24.53478 -23.50031 -22.23762 -21.65495 -20.75421 -20.52335 -19.10493 -18.69297 -18.50339 -18.26890 -17.66664 -17.16912 -16.98629 -16.64893 -16.40357 -16.07524 -15.92090 -15.80052 -15.43165 -15.17546 -15.02653 -14.96228 -14.81970 -14.72327 -14.26409 -14.12881 -13.85701 -13.72992 -13.46622 -13.41964 -13.20108 -12.79580 -12.60657 -12.37632 -12.16501 -11.89113 -11.82824 -11.53987 -11.33200 -11.10932 -10.81562 -10.80729 -10.37448 -10.30770 -9.35692 -8.83406 -4.88041 -0.18383 0.17549 1.33799 1.47361 1.64321 1.78622 1.95302 1.98145 2.08962 2.84646 3.04090 3.11892 3.15470 3.34979 3.51825 3.52881 3.61974 3.71304 3.78425 3.82886 4.01842 4.10693 4.24104 4.25907 4.35919 4.39195 4.44711 4.50569 4.55103 4.60080 4.61064 4.64050 4.71745 4.77751 4.84819 4.91584 4.98435 4.98694 5.21061 5.25008 5.31154 5.38312 5.47116 5.55311 5.95604 6.36777 6.56318 6.64036 6.89417 7.07006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.065 4.065 3 Si 0.785 3.215 4 C -0.181 4.181 5 C 0.079 3.921 6 N -0.571 5.571 7 C 0.112 3.888 8 C -0.124 4.124 9 C -0.068 4.068 10 C -0.180 4.180 11 C 0.564 3.436 12 O -0.583 6.583 13 N -0.714 5.714 14 C 0.113 3.887 15 C 0.079 3.921 16 F -0.198 7.198 17 C -0.134 4.134 18 C -0.112 4.112 19 H 0.087 0.913 20 C 0.083 3.917 21 O -0.598 6.598 22 C -0.141 4.141 23 C -0.016 4.016 24 C -0.129 4.129 25 H 0.390 0.610 26 H 0.071 0.929 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.206 0.794 30 H 0.439 0.561 31 H 0.161 0.839 32 H 0.154 0.846 33 H 0.413 0.587 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.397 0.603 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.364 0.174 1.603 6.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.172 4.172 3 Si 0.688 3.312 4 C -0.187 4.187 5 C -0.048 4.048 6 N -0.174 5.174 7 C 0.002 3.998 8 C -0.145 4.145 9 C -0.088 4.088 10 C -0.184 4.184 11 C 0.354 3.646 12 O -0.464 6.464 13 N -0.367 5.367 14 C -0.011 4.011 15 C 0.060 3.940 16 F -0.178 7.178 17 C -0.172 4.172 18 C -0.131 4.131 19 H 0.105 0.895 20 C 0.006 3.994 21 O -0.407 6.407 22 C -0.178 4.178 23 C -0.036 4.036 24 C -0.134 4.134 25 H 0.240 0.760 26 H 0.089 0.911 27 H -0.220 1.220 28 H -0.205 1.205 29 H 0.223 0.777 30 H 0.281 0.719 31 H 0.179 0.821 32 H 0.172 0.828 33 H 0.251 0.749 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.143 0.857 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.247 0.753 41 H 0.133 0.867 42 H 0.098 0.902 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.733 1.156 2.049 6.197 hybrid contribution -1.102 -0.574 -0.348 1.291 sum 4.630 0.581 1.701 4.967 Atomic orbital electron populations 1.86588 1.19431 1.80799 1.50530 1.24555 0.83322 1.12407 0.96966 0.94117 0.89630 0.70239 0.77220 1.19819 1.09810 0.90996 0.98111 1.22100 0.99094 0.95565 0.88047 1.41732 1.53991 1.03123 1.18587 1.18625 0.99763 0.87794 0.93585 1.20041 1.04430 0.87945 1.02045 1.20850 0.96090 1.00008 0.91872 1.19534 1.09195 0.92262 0.97445 1.18409 0.77322 0.83691 0.85216 1.90760 1.46751 1.86717 1.22207 1.45643 1.64146 1.04937 1.21928 1.21867 1.01618 0.82445 0.95149 1.22157 0.97818 0.95459 0.78537 1.92847 1.89830 1.97281 1.37885 1.23574 0.98444 0.92445 1.02761 1.22476 0.95684 0.94753 1.00171 0.89498 1.22223 0.87782 0.95323 0.94066 1.86440 1.45055 1.65265 1.43937 1.23719 0.94012 0.95095 1.04976 1.20578 0.94147 0.90389 0.98475 1.19207 1.05068 0.93495 0.95582 0.76043 0.91063 1.21955 1.20491 0.77741 0.71940 0.82104 0.82807 0.74929 0.91022 0.88369 0.89297 0.85657 0.92314 0.91742 0.75289 0.86676 0.90160 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.89 12.86 -148.98 -1.92 -5.80 16 2 C -0.07 -0.20 3.05 71.23 0.22 0.02 16 3 Si 0.79 -2.05 30.80 68.60 2.11 0.06 16 4 C -0.18 -0.85 5.61 -18.61 -0.10 -0.95 16 5 C 0.08 -0.13 10.43 82.98 0.87 0.74 16 6 N -0.57 1.87 6.05 -187.47 -1.13 0.74 16 7 C 0.11 0.27 7.27 39.19 0.28 0.56 16 8 C -0.12 0.11 10.00 22.10 0.22 0.33 16 9 C -0.07 -0.06 9.46 22.30 0.21 0.15 16 10 C -0.18 -1.40 5.87 -20.10 -0.12 -1.51 16 11 C 0.56 5.56 7.76 86.73 0.67 6.23 16 12 O -0.58 -10.34 16.33 -3.99 -0.07 -10.41 16 13 N -0.71 -2.14 5.42 -466.15 -2.52 -4.66 16 14 C 0.11 0.12 5.36 86.38 0.46 0.58 16 15 C 0.08 -0.10 1.67 -10.26 -0.02 -0.11 16 16 F -0.20 -0.71 16.80 44.97 0.76 0.05 16 17 C -0.13 0.55 7.09 31.12 0.22 0.77 16 18 C -0.11 0.23 3.98 -10.27 -0.04 0.18 16 19 H 0.09 0.14 8.14 -2.38 -0.02 0.12 16 20 C 0.08 -0.30 6.89 71.98 0.50 0.19 16 21 O -0.60 -0.02 13.66 -148.98 -2.04 -2.06 16 22 C -0.14 0.40 7.08 31.12 0.22 0.62 16 23 C -0.02 -0.18 9.64 22.74 0.22 0.04 16 24 C -0.13 -1.03 6.34 -20.21 -0.13 -1.16 16 25 H 0.39 -0.46 8.74 -74.05 -0.65 -1.11 16 26 H 0.07 0.16 7.96 -2.38 -0.02 0.14 16 27 H -0.29 -0.77 7.11 99.48 0.71 -0.07 16 28 H -0.28 -0.36 7.04 99.48 0.70 0.34 16 29 H 0.21 -1.69 6.30 -2.91 -0.02 -1.71 16 30 H 0.44 -4.68 8.96 -92.71 -0.83 -5.51 16 31 H 0.16 -1.23 8.06 -2.91 -0.02 -1.26 16 32 H 0.15 -0.81 6.36 -2.91 -0.02 -0.83 16 33 H 0.41 -0.56 6.19 -92.71 -0.57 -1.13 16 34 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.10 -0.03 7.94 -2.39 -0.02 -0.05 16 36 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.13 -1.00 8.06 -2.38 -0.02 -1.02 16 38 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.06 -0.42 7.85 -2.39 -0.02 -0.44 16 40 H 0.40 -3.31 9.12 -74.06 -0.68 -3.98 16 41 H 0.11 -0.60 7.72 -2.39 -0.02 -0.62 16 42 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.11 1.60 7.64 -2.91 -0.02 1.58 16 Total: 0.00 -28.83 365.21 -2.72 -31.55 By element: Atomic # 1 Polarization: -14.55 SS G_CDS: -1.59 Total: -16.15 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 3.68 Total: 6.68 kcal Atomic # 7 Polarization: -0.26 SS G_CDS: -3.66 Total: -3.92 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -4.02 Total: -18.26 kcal Atomic # 9 Polarization: -0.71 SS G_CDS: 0.76 Total: 0.05 kcal Atomic # 14 Polarization: -2.05 SS G_CDS: 2.11 Total: 0.06 kcal Total: -28.83 -2.72 -31.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_13287722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.764 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds