Wall clock time and date at job start Sun Mar 7 2021 08:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86303 * 109.46931 * 2 1 4 4 C 1.50699 * 109.47087 * 119.99932 * 2 1 3 5 5 C 1.38502 * 119.80849 * 245.02280 * 4 2 1 6 6 C 1.37825 * 120.30302 * 179.71944 * 5 4 2 7 7 C 1.39662 * 119.90683 * 0.51482 * 6 5 4 8 8 C 1.47541 * 120.19316 * 179.76987 * 7 6 5 9 9 O 1.21590 * 119.99972 * 179.71962 * 8 7 6 10 10 N 1.34777 * 119.99951 * 359.71115 * 8 7 6 11 11 C 1.46502 * 120.00161 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47057 * 180.02562 * 11 10 8 13 13 F 1.39901 * 112.90952 * 316.25170 * 12 11 10 14 14 C 1.53779 * 113.61529 * 87.50494 * 12 11 10 15 15 C 1.53779 * 87.08402 * 139.98073 * 14 12 11 16 16 H 1.09000 * 113.61527 * 89.11480 * 15 14 12 17 17 C 1.53000 * 113.61731 * 220.02348 * 15 14 12 18 18 O 1.42904 * 109.46797 * 272.49576 * 17 15 14 19 19 C 1.53784 * 113.61233 * 185.00081 * 12 11 10 20 20 C 1.40177 * 119.61943 * 359.48709 * 7 6 5 21 21 O 1.35650 * 120.15148 * 180.23475 * 20 7 6 22 22 C 1.38097 * 119.80316 * 64.99934 * 4 2 1 23 23 H 0.96700 * 113.99760 * 59.99409 * 1 2 3 24 24 H 1.08997 * 109.47041 * 240.00294 * 2 1 3 25 25 H 1.48501 * 110.00193 * 60.00440 * 3 2 1 26 26 H 1.48507 * 109.99486 * 181.31853 * 3 2 1 27 27 H 1.08003 * 119.84681 * 359.97438 * 5 4 2 28 28 H 1.08007 * 120.04897 * 180.25066 * 6 5 4 29 29 H 0.97005 * 119.99592 * 0.02562 * 10 8 7 30 30 H 1.08994 * 109.46583 * 60.00367 * 11 10 8 31 31 H 1.09001 * 109.46856 * 300.00825 * 11 10 8 32 32 H 1.09006 * 113.61307 * 25.43275 * 14 12 11 33 33 H 1.09007 * 113.61642 * 254.53032 * 14 12 11 34 34 H 1.09003 * 109.47303 * 32.48927 * 17 15 14 35 35 H 1.08993 * 109.47406 * 152.49206 * 17 15 14 36 36 H 0.96703 * 114.00131 * 179.97438 * 18 17 15 37 37 H 1.09004 * 113.61451 * 105.47254 * 19 12 11 38 38 H 1.08994 * 113.61477 * 334.56556 * 19 12 11 39 39 H 0.96703 * 113.99991 * 90.00301 * 21 20 7 40 40 H 1.08001 * 119.95981 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.6393 -0.0069 2.1908 6 6 3.0984 -0.6452 3.3228 7 6 2.8587 -2.0098 3.4985 8 6 3.3517 -2.7005 4.7054 9 8 3.1366 -3.8875 4.8572 10 7 4.0407 -2.0156 5.6396 11 6 4.5308 -2.7015 6.8379 12 6 5.2736 -1.7038 7.7286 13 9 6.1293 -0.8630 7.0087 14 6 4.3582 -0.9553 8.7118 15 6 5.4782 -1.1147 9.7535 16 1 6.2007 -0.2987 9.7462 17 6 4.9670 -1.4451 11.1573 18 8 4.6776 -0.2328 11.8563 19 6 5.9348 -2.3491 8.9580 20 6 2.1418 -2.7183 2.5243 21 8 1.8987 -4.0430 2.6862 22 6 1.6827 -2.0589 1.3941 23 1 -0.3933 0.4418 -0.7650 24 1 1.7924 -0.5138 -0.8900 25 1 1.5616 2.4679 1.2085 26 1 3.5347 1.7702 -0.0321 27 1 2.8288 1.0475 2.0539 28 1 3.6466 -0.0917 4.0710 29 1 4.2121 -1.0685 5.5186 30 1 5.2088 -3.5032 6.5457 31 1 3.6876 -3.1207 7.3869 32 1 3.4481 -1.5004 8.9623 33 1 4.1685 0.0804 8.4297 34 1 4.0608 -2.0462 11.0819 35 1 5.7297 -2.0040 11.6995 36 1 4.3478 -0.3663 12.7555 37 1 7.0180 -2.4386 8.8747 38 1 5.4557 -3.2751 9.2758 39 1 1.0732 -4.2375 3.1508 40 1 1.1300 -2.6007 0.6408 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_13422076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:28 Heat of formation + Delta-G solvation = -151.508427 kcal Electronic energy + Delta-G solvation = -25709.691315 eV Core-core repulsion = 21599.648245 eV Total energy + Delta-G solvation = -4110.043070 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.95660 -41.77280 -40.24778 -39.68644 -38.45491 -37.25656 -37.20349 -35.71745 -33.19038 -31.28720 -30.33563 -27.94936 -27.10525 -26.62666 -24.04906 -23.46621 -22.30168 -21.74866 -20.73329 -19.60005 -18.88914 -18.44442 -18.30727 -17.86459 -17.20124 -17.05133 -16.77253 -16.56740 -16.38711 -16.16415 -16.05134 -15.66830 -15.39600 -15.23647 -14.98537 -14.56711 -14.33349 -14.19413 -14.06742 -13.85085 -13.49313 -13.41134 -13.24380 -13.03198 -12.52327 -12.41691 -12.16689 -11.95148 -11.89181 -11.55429 -11.39530 -11.04328 -10.84307 -10.50649 -10.35348 -10.12868 -9.94767 -4.93001 -0.57762 -0.03839 1.26394 1.52361 1.67706 1.82610 1.95228 2.38873 2.97640 2.99681 3.05355 3.08523 3.23320 3.29818 3.41418 3.50118 3.57908 3.70793 3.78383 3.98931 4.09390 4.19578 4.22983 4.31419 4.39658 4.47803 4.53389 4.55994 4.58773 4.60820 4.67046 4.79394 4.80672 4.84930 4.93367 4.96370 5.07489 5.12879 5.32979 5.41115 6.21980 6.61515 6.86271 6.87040 6.94605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.088 4.088 3 Si 0.777 3.223 4 C -0.039 4.039 5 C -0.154 4.154 6 C -0.056 4.056 7 C -0.182 4.182 8 C 0.560 3.440 9 O -0.554 6.554 10 N -0.717 5.717 11 C 0.115 3.885 12 C 0.078 3.922 13 F -0.199 7.199 14 C -0.142 4.142 15 C -0.113 4.113 16 H 0.086 0.914 17 C 0.083 3.917 18 O -0.599 6.599 19 C -0.133 4.133 20 C 0.162 3.838 21 O -0.491 6.491 22 C -0.133 4.133 23 H 0.406 0.594 24 H 0.099 0.901 25 H -0.288 1.288 26 H -0.286 1.286 27 H 0.135 0.865 28 H 0.157 0.843 29 H 0.410 0.590 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.410 0.590 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.229 3.333 -0.331 4.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.197 4.197 3 Si 0.682 3.318 4 C -0.039 4.039 5 C -0.172 4.172 6 C -0.074 4.074 7 C -0.186 4.186 8 C 0.348 3.652 9 O -0.433 6.433 10 N -0.370 5.370 11 C -0.009 4.009 12 C 0.059 3.941 13 F -0.179 7.179 14 C -0.180 4.180 15 C -0.131 4.131 16 H 0.104 0.896 17 C 0.006 3.994 18 O -0.408 6.408 19 C -0.171 4.171 20 C 0.116 3.884 21 O -0.305 6.305 22 C -0.151 4.151 23 H 0.258 0.742 24 H 0.117 0.883 25 H -0.216 1.216 26 H -0.213 1.213 27 H 0.152 0.848 28 H 0.174 0.826 29 H 0.248 0.752 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.247 0.753 37 H 0.108 0.892 38 H 0.145 0.855 39 H 0.271 0.729 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.069 2.954 -0.099 3.143 hybrid contribution -0.192 -0.300 0.864 0.934 sum -1.261 2.654 0.765 3.037 Atomic orbital electron populations 1.86434 1.16648 1.82548 1.51563 1.24964 0.86387 1.11619 0.96715 0.94104 0.77545 0.75037 0.85113 1.19844 0.95212 0.93558 0.95332 1.21042 1.01241 1.00033 0.94839 1.21344 0.96558 0.92100 0.97433 1.20413 1.06709 0.94977 0.96457 1.18152 0.78027 0.86213 0.82766 1.90807 1.58230 1.15864 1.78411 1.45714 1.56229 1.14018 1.21079 1.21901 0.99135 0.94571 0.85312 1.22190 0.90968 0.90637 0.90297 1.92842 1.72209 1.73056 1.79812 1.23751 0.98130 1.01955 0.94128 1.22478 0.98252 0.98794 0.93585 0.89591 1.22226 0.99666 0.86132 0.91365 1.86442 1.88704 1.32668 1.32940 1.23578 1.02818 0.98954 0.91735 1.18696 0.94016 0.83457 0.92244 1.84703 1.47276 1.18314 1.80195 1.21426 1.01019 0.94161 0.98533 0.74176 0.88346 1.21577 1.21296 0.84754 0.82554 0.75219 0.90653 0.88150 0.86562 0.90493 0.91685 0.92232 0.75252 0.89246 0.85492 0.72915 0.83253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.29 12.81 -148.98 -1.91 -0.62 16 2 C -0.09 0.21 2.78 71.24 0.20 0.41 16 3 Si 0.78 -3.35 29.83 68.60 2.05 -1.31 16 4 C -0.04 -0.13 5.39 -19.84 -0.11 -0.24 16 5 C -0.15 -0.48 8.64 22.23 0.19 -0.29 16 6 C -0.06 -0.14 9.54 22.52 0.21 0.08 16 7 C -0.18 -1.22 5.89 -20.01 -0.12 -1.34 16 8 C 0.56 4.70 7.76 86.70 0.67 5.37 16 9 O -0.55 -8.25 15.16 16.92 0.26 -7.99 16 10 N -0.72 -1.78 5.40 -466.27 -2.52 -4.29 16 11 C 0.11 0.02 5.43 86.38 0.47 0.49 16 12 C 0.08 -0.11 1.74 -10.27 -0.02 -0.13 16 13 F -0.20 -0.69 16.58 44.97 0.75 0.05 16 14 C -0.14 0.38 7.08 31.12 0.22 0.60 16 15 C -0.11 0.23 3.99 -10.27 -0.04 0.18 16 16 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 17 C 0.08 -0.31 6.88 71.98 0.50 0.18 16 18 O -0.60 -0.08 13.66 -148.98 -2.04 -2.11 16 19 C -0.13 0.59 7.10 31.12 0.22 0.81 16 20 C 0.16 1.25 6.72 22.84 0.15 1.40 16 21 O -0.49 -4.25 11.58 -68.73 -0.80 -5.05 16 22 C -0.13 -0.66 9.60 22.34 0.21 -0.44 16 23 H 0.41 -5.20 8.74 -74.06 -0.65 -5.85 16 24 H 0.10 -0.60 7.96 -2.39 -0.02 -0.62 16 25 H -0.29 -0.65 7.04 99.48 0.70 0.05 16 26 H -0.29 -0.34 7.11 99.48 0.71 0.37 16 27 H 0.14 0.15 4.83 -2.91 -0.01 0.13 16 28 H 0.16 -0.52 6.40 -2.91 -0.02 -0.54 16 29 H 0.41 -0.40 6.06 -92.70 -0.56 -0.96 16 30 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.10 -0.15 7.84 -2.39 -0.02 -0.17 16 32 H 0.12 -0.63 7.65 -2.38 -0.02 -0.65 16 33 H 0.08 -0.07 8.14 -2.38 -0.02 -0.09 16 34 H 0.06 -0.44 7.84 -2.39 -0.02 -0.46 16 35 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H 0.40 -3.29 9.12 -74.06 -0.68 -3.97 16 37 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.13 -1.09 8.06 -2.39 -0.02 -1.11 16 39 H 0.41 0.50 9.06 -74.06 -0.67 -0.17 16 40 H 0.15 0.40 8.06 -2.91 -0.02 0.37 16 Total: 0.00 -25.49 340.04 -2.84 -28.32 By element: Atomic # 1 Polarization: -12.69 SS G_CDS: -1.40 Total: -14.09 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 2.77 Total: 7.09 kcal Atomic # 7 Polarization: -1.78 SS G_CDS: -2.52 Total: -4.29 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -4.48 Total: -15.77 kcal Atomic # 9 Polarization: -0.69 SS G_CDS: 0.75 Total: 0.05 kcal Atomic # 14 Polarization: -3.35 SS G_CDS: 2.05 Total: -1.31 kcal Total: -25.49 -2.84 -28.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_13422076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.188 kcal (2) G-P(sol) polarization free energy of solvation -25.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds