Wall clock time and date at job start Sun Mar 7 2021 08:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37788 * 119.84937 * 2 1 4 4 C 1.39708 * 119.90653 * 179.97438 * 3 2 1 5 5 C 1.47539 * 120.18784 * 180.02562 * 4 3 2 6 6 O 1.21589 * 119.99557 * 179.97438 * 5 4 3 7 7 N 1.34774 * 120.00407 * 359.97438 * 5 4 3 8 8 C 1.46496 * 120.00405 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47355 * 180.02562 * 8 7 5 10 10 F 1.39903 * 112.84828 * 316.18889 * 9 8 7 11 11 C 1.53773 * 113.62027 * 87.50034 * 9 8 7 12 12 C 1.53779 * 87.08639 * 139.98243 * 11 9 8 13 13 H 1.08992 * 113.61781 * 89.11739 * 12 11 9 14 14 C 1.53001 * 113.68904 * 220.01337 * 12 11 9 15 15 O 1.42900 * 109.46950 * 272.53128 * 14 12 11 16 16 C 1.53781 * 87.07745 * 334.56703 * 12 11 9 17 17 C 1.40142 * 119.61822 * 0.02562 * 4 3 2 18 18 O 1.35651 * 120.14822 * 179.97438 * 17 4 3 19 19 C 1.38700 * 119.69653 * 0.02562 * 17 4 3 20 20 C 1.50707 * 119.95508 * 179.97438 * 19 17 4 21 21 O 1.42903 * 109.46442 * 75.00158 * 20 19 17 22 22 Si 1.86293 * 109.47256 * 194.99724 * 20 19 17 23 23 C 1.38052 * 120.09056 * 0.25238 * 19 17 4 24 24 H 1.08999 * 109.47543 * 89.99525 * 1 2 3 25 25 H 1.09004 * 109.47240 * 209.99204 * 1 2 3 26 26 H 1.08997 * 109.47276 * 329.99521 * 1 2 3 27 27 H 1.07993 * 120.04886 * 0.02562 * 3 2 1 28 28 H 0.97002 * 119.99665 * 0.02562 * 7 5 4 29 29 H 1.09007 * 109.46619 * 300.00042 * 8 7 5 30 30 H 1.08999 * 109.47019 * 59.99449 * 8 7 5 31 31 H 1.09006 * 113.61736 * 254.53629 * 11 9 8 32 32 H 1.09004 * 113.61287 * 25.43161 * 11 9 8 33 33 H 1.08992 * 109.47692 * 32.53072 * 14 12 11 34 34 H 1.09003 * 109.47420 * 152.53573 * 14 12 11 35 35 H 0.96698 * 114.00071 * 180.02562 * 15 14 12 36 36 H 1.08995 * 113.61752 * 270.88073 * 16 12 11 37 37 H 1.09001 * 113.69045 * 139.99424 * 16 12 11 38 38 H 0.96703 * 113.99674 * 270.02476 * 18 17 4 39 39 H 1.08999 * 109.47345 * 315.00228 * 20 19 17 40 40 H 0.96700 * 114.00311 * 60.00230 * 21 20 19 41 41 H 1.48506 * 109.99973 * 180.02562 * 22 20 19 42 42 H 1.48493 * 110.00375 * 301.32185 * 22 20 19 43 43 H 1.07999 * 119.80910 * 179.72588 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1927 1.1951 0.0000 4 6 3.5898 1.1965 0.0005 5 6 4.3304 2.4725 0.0011 6 8 5.5463 2.4697 0.0021 7 7 3.6593 3.6413 0.0006 8 6 4.3947 4.9083 0.0006 9 6 3.4032 6.0735 0.0006 10 9 2.3426 5.8843 -0.8919 11 6 2.9571 6.5029 1.4082 12 6 3.0484 7.9545 0.9089 13 1 2.1243 8.3218 0.4629 14 6 3.6377 8.9223 1.9370 15 8 2.5931 9.4212 2.7748 16 6 4.0730 7.4523 -0.1222 17 6 4.2836 -0.0211 0.0005 18 8 5.6401 -0.0323 0.0005 19 6 3.5770 -1.2146 -0.0005 20 6 4.3172 -2.5274 -0.0011 21 8 4.8543 -2.7718 1.3004 22 14 3.1446 -3.9013 -0.4570 23 6 2.1966 -1.2017 -0.0069 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8901 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.6511 2.1294 0.0004 28 1 2.6893 3.6435 0.0002 29 1 5.0211 4.9647 0.8909 30 1 5.0219 4.9643 -0.8891 31 1 1.9434 6.1904 1.6593 32 1 3.6803 6.2629 2.1876 33 1 4.3745 8.4000 2.5471 34 1 4.1173 9.7536 1.4204 35 1 2.8946 10.0424 3.4517 36 1 5.1012 7.4719 0.2388 37 1 3.9615 7.9058 -1.1071 38 1 6.0334 -0.0352 -0.8829 39 1 5.1290 -2.4865 -0.7274 40 1 4.1870 -2.8208 1.9985 41 1 3.8623 -5.2014 -0.4606 42 1 2.0164 -3.9472 0.5074 43 1 1.6509 -2.1337 -0.0122 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_13422088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:31 Heat of formation + Delta-G solvation = -156.795111 kcal Electronic energy + Delta-G solvation = -27973.046864 eV Core-core repulsion = 23707.236928 eV Total energy + Delta-G solvation = -4265.809937 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.90848 -41.77958 -40.28510 -39.68223 -38.08314 -37.79983 -37.19038 -35.67356 -33.15106 -32.97756 -30.21045 -27.61169 -27.34968 -27.00838 -26.79067 -24.75780 -22.36144 -21.93801 -21.58322 -20.66635 -19.73436 -18.57067 -18.33558 -18.22233 -17.56564 -17.12804 -16.90178 -16.76918 -16.48667 -16.30955 -16.04740 -15.98369 -15.77433 -15.48426 -15.01972 -14.94566 -14.74211 -14.48774 -14.24102 -14.18510 -13.80612 -13.59629 -13.42786 -13.35979 -13.22736 -12.93087 -12.55863 -12.38778 -12.27083 -11.91892 -11.85297 -11.72984 -11.52499 -11.36130 -11.06430 -10.83182 -10.55138 -10.38564 -10.08980 -9.52524 -4.94890 -0.38617 0.05225 1.24757 1.54974 1.65848 1.88327 1.96470 2.52322 3.00891 3.08543 3.11982 3.14551 3.31419 3.34181 3.47214 3.53574 3.59037 3.74879 3.80831 4.09191 4.15379 4.22525 4.33761 4.34936 4.43256 4.48321 4.54488 4.58163 4.61109 4.61427 4.69616 4.78876 4.82442 4.88061 4.88718 4.95115 4.96137 5.14781 5.18562 5.22372 5.36242 5.39717 5.65186 6.30572 6.46183 6.72495 6.87240 7.03323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.063 4.063 4 C -0.181 4.181 5 C 0.558 3.442 6 O -0.559 6.559 7 N -0.716 5.716 8 C 0.114 3.886 9 C 0.081 3.919 10 F -0.196 7.196 11 C -0.143 4.143 12 C -0.112 4.112 13 H 0.088 0.912 14 C 0.083 3.917 15 O -0.598 6.598 16 C -0.134 4.134 17 C 0.168 3.832 18 O -0.490 6.490 19 C -0.152 4.152 20 C -0.084 4.084 21 O -0.546 6.546 22 Si 0.784 3.216 23 C -0.078 4.078 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.152 0.848 28 H 0.411 0.589 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.397 0.603 36 H 0.124 0.876 37 H 0.091 0.909 38 H 0.403 0.597 39 H 0.115 0.885 40 H 0.383 0.617 41 H -0.304 1.304 42 H -0.268 1.268 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.211 2.368 -1.863 6.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.081 4.081 4 C -0.185 4.185 5 C 0.346 3.654 6 O -0.439 6.439 7 N -0.370 5.370 8 C -0.009 4.009 9 C 0.062 3.938 10 F -0.176 7.176 11 C -0.181 4.181 12 C -0.131 4.131 13 H 0.106 0.894 14 C 0.005 3.995 15 O -0.407 6.407 16 C -0.172 4.172 17 C 0.121 3.879 18 O -0.303 6.303 19 C -0.153 4.153 20 C -0.191 4.191 21 O -0.354 6.354 22 Si 0.687 3.313 23 C -0.095 4.095 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.169 0.831 28 H 0.249 0.751 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.247 0.753 36 H 0.142 0.858 37 H 0.109 0.891 38 H 0.262 0.738 39 H 0.133 0.867 40 H 0.232 0.768 41 H -0.233 1.233 42 H -0.194 1.194 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.590 1.297 -1.749 5.080 hybrid contribution 0.406 0.682 0.979 1.260 sum -4.184 1.978 -0.770 4.692 Atomic orbital electron populations 1.20921 0.88122 1.04262 1.04126 1.20096 0.98064 0.91725 0.99478 1.21384 0.91153 0.99728 0.95859 1.20377 0.94937 0.92551 1.10632 1.18289 0.86901 0.84170 0.76036 1.90812 1.14634 1.87878 1.50540 1.45689 1.11114 1.04886 1.75268 1.21864 0.94011 0.80851 1.04222 1.22127 0.85523 0.95776 0.90336 1.92845 1.58571 1.96218 1.70003 1.23741 1.03865 0.95534 0.94927 1.22477 0.99779 0.94481 0.96324 0.89377 1.22229 0.89117 0.96480 0.91627 1.86438 1.37411 1.66484 1.50376 1.23575 1.00594 0.91960 1.01048 1.18501 0.83580 0.90654 0.95172 1.84757 1.15248 1.96036 1.34226 1.20652 0.94547 0.95089 1.05042 1.25305 1.05985 0.99920 0.87912 1.86639 1.37981 1.93470 1.17331 0.94058 0.75497 0.73183 0.88545 1.21407 0.92281 0.99621 0.96230 0.89179 0.90313 0.90248 0.83054 0.75099 0.88850 0.90490 0.90297 0.86936 0.91902 0.92228 0.75287 0.85765 0.89079 0.73753 0.86667 0.76787 1.23262 1.19367 0.82749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.99 10.00 71.23 0.71 1.71 16 2 C -0.09 0.33 5.87 -19.90 -0.12 0.21 16 3 C -0.06 0.10 9.18 22.52 0.21 0.31 16 4 C -0.18 -0.83 5.89 -20.01 -0.12 -0.94 16 5 C 0.56 4.17 7.76 86.70 0.67 4.84 16 6 O -0.56 -8.38 15.16 16.92 0.26 -8.12 16 7 N -0.72 -0.96 5.40 -466.28 -2.52 -3.47 16 8 C 0.11 -0.04 5.42 86.38 0.47 0.43 16 9 C 0.08 -0.19 1.74 -10.27 -0.02 -0.21 16 10 F -0.20 -0.35 16.58 44.97 0.75 0.40 16 11 C -0.14 0.44 7.08 31.12 0.22 0.66 16 12 C -0.11 0.28 3.99 -10.27 -0.04 0.24 16 13 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 14 C 0.08 -0.32 6.89 71.98 0.50 0.18 16 15 O -0.60 0.05 13.66 -148.98 -2.03 -1.99 16 16 C -0.13 0.67 7.10 31.12 0.22 0.89 16 17 C 0.17 1.04 6.69 22.84 0.15 1.19 16 18 O -0.49 -4.68 10.91 -68.75 -0.75 -5.43 16 19 C -0.15 -0.24 5.27 -19.80 -0.10 -0.34 16 20 C -0.08 -0.11 2.38 71.24 0.17 0.06 16 21 O -0.55 -3.41 12.88 -148.98 -1.92 -5.33 16 22 Si 0.78 -2.30 30.23 68.60 2.07 -0.23 16 23 C -0.08 0.20 8.30 22.30 0.19 0.39 16 24 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 25 H 0.08 -0.74 8.09 -2.38 -0.02 -0.76 16 26 H 0.08 -0.76 8.08 -2.39 -0.02 -0.78 16 27 H 0.15 -1.01 6.40 -2.91 -0.02 -1.03 16 28 H 0.41 -1.09 6.06 -92.71 -0.56 -1.65 16 29 H 0.09 -0.07 7.84 -2.38 -0.02 -0.09 16 30 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.08 -0.13 8.14 -2.38 -0.02 -0.15 16 32 H 0.11 -0.57 7.65 -2.39 -0.02 -0.59 16 33 H 0.06 -0.41 7.85 -2.39 -0.02 -0.43 16 34 H 0.06 -0.35 8.14 -2.39 -0.02 -0.36 16 35 H 0.40 -3.32 9.12 -74.06 -0.68 -4.00 16 36 H 0.12 -1.07 8.06 -2.39 -0.02 -1.09 16 37 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 38 H 0.40 1.03 9.06 -74.06 -0.67 0.36 16 39 H 0.12 0.07 7.83 -2.39 -0.02 0.05 16 40 H 0.38 -0.02 8.70 -74.06 -0.64 -0.67 16 41 H -0.30 -1.64 7.11 99.48 0.71 -0.93 16 42 H -0.27 0.40 6.69 99.48 0.67 1.07 16 43 H 0.16 -1.02 4.83 -2.91 -0.01 -1.04 16 Total: 0.00 -25.41 360.59 -2.50 -27.91 By element: Atomic # 1 Polarization: -11.90 SS G_CDS: -1.46 Total: -13.36 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 3.11 Total: 9.63 kcal Atomic # 7 Polarization: -0.96 SS G_CDS: -2.52 Total: -3.47 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -4.45 Total: -20.87 kcal Atomic # 9 Polarization: -0.35 SS G_CDS: 0.75 Total: 0.40 kcal Atomic # 14 Polarization: -2.30 SS G_CDS: 2.07 Total: -0.23 kcal Total: -25.41 -2.50 -27.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_13422088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.889 kcal (2) G-P(sol) polarization free energy of solvation -25.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds