Wall clock time and date at job start Sun Mar 7 2021 08:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37876 * 126.45452 * 2 1 4 4 C 1.46680 * 126.23468 * 0.24762 * 3 2 1 5 5 O 1.21693 * 119.99937 * 359.70740 * 4 3 2 6 6 N 1.34771 * 119.99875 * 179.71008 * 4 3 2 7 7 C 1.46500 * 119.99658 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.47011 * 179.97438 * 7 6 4 9 9 F 1.39897 * 112.85029 * 48.80513 * 8 7 6 10 10 C 1.53783 * 113.61367 * 180.02562 * 8 7 6 11 11 C 1.53782 * 87.08159 * 139.98387 * 10 8 7 12 12 H 1.08998 * 113.61575 * 89.11379 * 11 10 8 13 13 C 1.53003 * 113.61035 * 219.93635 * 11 10 8 14 14 O 1.42904 * 109.46728 * 184.99604 * 13 11 10 15 15 C 1.53782 * 113.61217 * 277.49708 * 8 7 6 16 16 N 1.37655 * 107.53112 * 179.97438 * 3 2 1 17 17 C 1.35531 * 108.64328 * 0.02562 * 16 3 2 18 18 C 1.50706 * 125.56185 * 180.02562 * 17 16 3 19 19 O 1.42904 * 109.46876 * 119.97185 * 18 17 16 20 20 Si 1.86301 * 109.47074 * 359.97170 * 18 17 16 21 21 C 1.35452 * 108.87411 * 359.97438 * 17 16 3 22 22 H 1.09002 * 109.47116 * 89.99565 * 1 2 3 23 23 H 1.09001 * 109.46889 * 209.99704 * 1 2 3 24 24 H 1.08999 * 109.46738 * 329.99523 * 1 2 3 25 25 H 0.97000 * 120.00050 * 0.02562 * 6 4 3 26 26 H 1.08998 * 109.47368 * 300.00158 * 7 6 4 27 27 H 1.09001 * 109.47066 * 60.00219 * 7 6 4 28 28 H 1.09004 * 113.61072 * 254.52860 * 10 8 7 29 29 H 1.08994 * 113.61553 * 25.43163 * 10 8 7 30 30 H 1.09003 * 109.46781 * 304.99128 * 13 11 10 31 31 H 1.08999 * 109.47581 * 64.99536 * 13 11 10 32 32 H 0.96695 * 113.99576 * 179.97438 * 14 13 11 33 33 H 1.08996 * 113.61717 * 334.56507 * 15 8 7 34 34 H 1.09001 * 113.61069 * 105.47786 * 15 8 7 35 35 H 0.97003 * 125.67541 * 180.02562 * 16 3 2 36 36 H 1.08994 * 109.46802 * 239.96962 * 18 17 16 37 37 H 0.96701 * 113.99651 * 299.99760 * 19 18 17 38 38 H 1.48500 * 109.99924 * 58.68008 * 20 18 17 39 39 H 1.48500 * 110.00035 * 180.02562 * 20 18 17 40 40 H 1.08002 * 126.06766 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1090 0.0000 4 6 1.8898 2.5093 0.0051 5 8 0.7026 2.7766 0.0045 6 7 2.8036 3.4999 0.0104 7 6 2.3677 4.8985 0.0149 8 6 3.5931 5.8147 0.0211 9 9 4.5387 5.4637 -0.9484 10 6 3.2427 7.3121 0.0268 11 6 4.4041 7.4996 1.0173 12 1 5.3633 7.6872 0.5350 13 6 4.0983 8.4943 2.1390 14 8 5.2687 8.6885 2.9355 15 6 4.1936 6.0308 1.4202 16 7 3.6284 0.6626 0.0006 17 6 3.6218 -0.6927 0.0004 18 6 4.8435 -1.5752 0.0014 19 8 4.8343 -2.3999 1.1684 20 14 6.3754 -0.5150 0.0022 21 6 2.3380 -1.1246 0.0002 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 3.7499 3.2868 0.0104 26 1 1.7705 5.0959 -0.8753 27 1 1.7675 5.0892 0.9047 28 1 3.4045 7.8020 -0.9334 29 1 2.2643 7.5299 0.4548 30 1 3.7911 9.4464 1.7064 31 1 3.2950 8.1026 2.7630 32 1 5.1479 9.3089 3.6673 33 1 3.4749 5.8986 2.2290 34 1 5.1232 5.4861 1.5852 35 1 4.4191 1.2245 0.0011 36 1 4.8377 -2.2047 -0.8884 37 1 4.8388 -1.9054 1.9994 38 1 6.3794 0.3708 1.1940 39 1 7.5872 -1.3733 0.0025 40 1 2.0137 -2.1548 -0.0003 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_13940406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:47 Heat of formation + Delta-G solvation = -98.786395 kcal Electronic energy + Delta-G solvation = -24488.722188 eV Core-core repulsion = 20606.910120 eV Total energy + Delta-G solvation = -3881.812068 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.89369 -42.65854 -40.47906 -39.71598 -37.90432 -37.21552 -35.82935 -33.68168 -31.79725 -30.18349 -28.38847 -27.66792 -27.04812 -26.15057 -22.75213 -22.24864 -21.61971 -20.79637 -20.39197 -19.82851 -18.28820 -18.04229 -17.50937 -17.08147 -16.93615 -16.71241 -16.42427 -16.32054 -16.05878 -15.64925 -15.20551 -14.98386 -14.93894 -14.82188 -14.14606 -14.08506 -14.00343 -13.75203 -13.60155 -13.44381 -13.42028 -13.22395 -13.03614 -12.68514 -12.39504 -12.16343 -11.90207 -11.55099 -11.35454 -11.13313 -10.82893 -10.75448 -10.38555 -9.84188 -9.22826 -5.10173 0.23430 1.09199 1.41464 1.54105 1.74365 1.86228 2.00879 2.20855 3.01789 3.09860 3.13255 3.28734 3.32818 3.50989 3.61499 3.74850 3.81538 4.11456 4.21780 4.24830 4.34451 4.44400 4.50267 4.54687 4.59171 4.62096 4.70016 4.70626 4.82744 4.83666 4.87326 4.88640 4.97140 5.08860 5.15755 5.34085 5.36725 5.60049 5.82239 6.19777 6.36031 6.40588 6.87049 6.97294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.087 4.087 3 C -0.064 4.064 4 C 0.591 3.409 5 O -0.556 6.556 6 N -0.721 5.721 7 C 0.115 3.885 8 C 0.079 3.921 9 F -0.196 7.196 10 C -0.133 4.133 11 C -0.113 4.113 12 H 0.087 0.913 13 C 0.082 3.918 14 O -0.599 6.599 15 C -0.144 4.144 16 N -0.522 5.522 17 C 0.032 3.968 18 C -0.052 4.052 19 O -0.537 6.537 20 Si 0.749 3.251 21 C -0.189 4.189 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.407 0.593 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.397 0.603 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.424 0.576 36 H 0.143 0.857 37 H 0.388 0.612 38 H -0.270 1.270 39 H -0.288 1.288 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 3.817 0.649 4.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.177 4.177 4 C 0.380 3.620 5 O -0.434 6.434 6 N -0.373 5.373 7 C -0.008 4.008 8 C 0.060 3.940 9 F -0.177 7.177 10 C -0.171 4.171 11 C -0.132 4.132 12 H 0.105 0.895 13 C 0.005 3.995 14 O -0.408 6.408 15 C -0.181 4.181 16 N -0.123 5.123 17 C -0.085 4.085 18 C -0.162 4.162 19 O -0.344 6.344 20 Si 0.651 3.349 21 C -0.214 4.214 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.242 0.758 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.144 0.856 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.247 0.753 33 H 0.132 0.868 34 H 0.096 0.904 35 H 0.266 0.734 36 H 0.161 0.839 37 H 0.238 0.762 38 H -0.196 1.196 39 H -0.215 1.215 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.101 3.495 0.185 4.082 hybrid contribution 0.369 0.076 1.302 1.355 sum 2.469 3.571 1.487 4.589 Atomic orbital electron populations 1.20332 0.89173 1.02777 1.02371 1.20231 0.96348 0.91300 1.01700 1.20041 0.84227 0.93007 1.20435 1.17092 0.85484 0.83473 0.75938 1.90827 1.17238 1.83656 1.51720 1.45646 1.09892 1.06010 1.75705 1.21891 0.95448 0.78844 1.04661 1.22151 0.87065 0.96405 0.88352 1.92852 1.66542 1.93212 1.65088 1.23567 1.00537 0.91807 1.01165 1.22480 0.99595 0.94728 0.96365 0.89511 1.22241 0.87182 0.98295 0.91773 1.86439 1.37575 1.69325 1.47415 1.23734 1.02556 0.96621 0.95198 1.41940 1.06871 1.06454 1.57046 1.20966 0.97705 0.82741 1.07128 1.24768 1.00756 0.98473 0.92210 1.86643 1.95440 1.35890 1.16457 0.94702 0.73749 0.79666 0.86738 1.20762 0.91081 0.99121 1.10388 0.91309 0.90731 0.91684 0.75773 0.90288 0.88208 0.89144 0.85582 0.92276 0.91788 0.75312 0.86753 0.90425 0.73425 0.83941 0.76205 1.19560 1.21456 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 9.83 71.24 0.70 0.20 16 2 C -0.09 -0.50 6.21 -19.56 -0.12 -0.62 16 3 C -0.06 -0.25 7.06 40.35 0.28 0.03 16 4 C 0.59 3.16 7.79 86.45 0.67 3.83 16 5 O -0.56 -6.67 14.80 -4.32 -0.06 -6.73 16 6 N -0.72 0.64 5.46 -467.08 -2.55 -1.91 16 7 C 0.12 -0.29 5.37 86.38 0.46 0.17 16 8 C 0.08 -0.31 1.67 -10.27 -0.02 -0.33 16 9 F -0.20 -0.10 16.80 44.97 0.76 0.66 16 10 C -0.13 0.85 7.10 31.12 0.22 1.07 16 11 C -0.11 0.41 3.99 -10.28 -0.04 0.37 16 12 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 13 C 0.08 -0.40 6.89 71.98 0.50 0.10 16 14 O -0.60 0.52 13.66 -148.98 -2.04 -1.52 16 15 C -0.14 0.67 7.08 31.11 0.22 0.89 16 16 N -0.52 1.06 5.47 -171.92 -0.94 0.12 16 17 C 0.03 -0.03 6.12 41.35 0.25 0.23 16 18 C -0.05 0.19 2.98 71.24 0.21 0.40 16 19 O -0.54 0.14 12.87 -148.98 -1.92 -1.78 16 20 Si 0.75 -4.35 30.96 68.60 2.12 -2.23 16 21 C -0.19 -0.58 10.64 22.01 0.23 -0.35 16 22 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 23 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 24 H 0.06 0.58 6.48 -2.39 -0.02 0.56 16 25 H 0.41 -2.01 7.31 -92.71 -0.68 -2.69 16 26 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 27 H 0.10 -0.38 7.94 -2.39 -0.02 -0.40 16 28 H 0.09 -0.53 8.14 -2.38 -0.02 -0.55 16 29 H 0.13 -1.29 8.06 -2.39 -0.02 -1.31 16 30 H 0.06 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.06 -0.50 7.85 -2.39 -0.02 -0.52 16 32 H 0.40 -3.59 9.12 -74.06 -0.68 -4.26 16 33 H 0.11 -0.79 7.72 -2.39 -0.02 -0.81 16 34 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 35 H 0.42 -3.24 5.98 -92.71 -0.55 -3.79 16 36 H 0.14 -0.79 7.96 -2.39 -0.02 -0.81 16 37 H 0.39 -2.20 8.70 -74.06 -0.64 -2.84 16 38 H -0.27 0.83 7.11 99.48 0.71 1.54 16 39 H -0.29 -0.60 7.11 99.48 0.71 0.10 16 40 H 0.15 0.28 8.06 -2.91 -0.02 0.25 16 Total: 0.00 -20.71 339.10 -2.46 -23.17 By element: Atomic # 1 Polarization: -14.36 SS G_CDS: -1.41 Total: -15.77 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 3.58 Total: 5.98 kcal Atomic # 7 Polarization: 1.70 SS G_CDS: -3.49 Total: -1.79 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -4.02 Total: -10.03 kcal Atomic # 9 Polarization: -0.10 SS G_CDS: 0.76 Total: 0.66 kcal Atomic # 14 Polarization: -4.35 SS G_CDS: 2.12 Total: -2.23 kcal Total: -20.71 -2.46 -23.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_13940406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.614 kcal (2) G-P(sol) polarization free energy of solvation -20.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds