Wall clock time and date at job start Sun Mar 7 2021 08:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86305 * 109.47201 * 2 1 4 4 C 1.50698 * 109.47383 * 239.99837 * 2 1 3 5 5 C 1.34496 * 125.49468 * 149.97462 * 4 2 1 6 6 C 1.46748 * 106.36670 * 180.02562 * 5 4 2 7 7 C 1.47263 * 126.97142 * 179.97438 * 6 5 4 8 8 O 1.21623 * 120.00126 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99630 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72408 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 F 1.39897 * 112.84783 * 316.19675 * 11 10 9 13 13 C 1.53787 * 113.61355 * 87.50373 * 11 10 9 14 14 C 1.53783 * 87.08023 * 139.98452 * 13 11 10 15 15 H 1.08995 * 113.61720 * 89.11229 * 14 13 11 16 16 C 1.53003 * 113.68795 * 220.00911 * 14 13 11 17 17 O 1.42906 * 109.46830 * 272.53281 * 16 14 13 18 18 C 1.53782 * 113.61417 * 185.00090 * 11 10 9 19 19 C 1.36338 * 106.05842 * 0.24680 * 6 5 4 20 20 C 1.51006 * 126.78751 * 180.46335 * 19 6 5 21 21 C 1.53392 * 108.30920 * 163.85358 * 20 19 6 22 22 C 1.53154 * 109.04567 * 48.24928 * 21 20 19 23 23 C 1.53126 * 109.53085 * 290.43259 * 22 21 20 24 24 N 1.35204 * 108.66147 * 359.60103 * 19 6 5 25 25 H 0.96699 * 114.00045 * 59.99627 * 1 2 3 26 26 H 1.09001 * 109.46942 * 119.99950 * 2 1 3 27 27 H 1.48492 * 109.99812 * 298.68091 * 3 2 1 28 28 H 1.48501 * 109.99790 * 60.00112 * 3 2 1 29 29 H 1.08000 * 126.81389 * 0.02562 * 5 4 2 30 30 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 31 31 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 32 32 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 33 33 H 1.08998 * 113.61128 * 254.53330 * 13 11 10 34 34 H 1.08998 * 113.61325 * 25.42994 * 13 11 10 35 35 H 1.08994 * 109.47045 * 32.53180 * 16 14 13 36 36 H 1.08999 * 109.46892 * 152.53122 * 16 14 13 37 37 H 0.96696 * 113.99745 * 179.97438 * 17 16 14 38 38 H 1.09001 * 113.61616 * 334.56263 * 18 11 10 39 39 H 1.09000 * 113.61435 * 105.38746 * 18 11 10 40 40 H 1.09001 * 109.86461 * 44.02862 * 20 19 6 41 41 H 1.09005 * 109.51733 * 283.46896 * 20 19 6 42 42 H 1.09008 * 109.53931 * 288.38083 * 21 20 19 43 43 H 1.09007 * 109.53985 * 168.12233 * 21 20 19 44 44 H 1.08994 * 109.46086 * 170.40950 * 22 21 20 45 45 H 1.09003 * 109.45742 * 50.44894 * 22 21 20 46 46 H 1.09000 * 109.56112 * 291.14033 * 23 22 21 47 47 H 1.09003 * 109.65587 * 170.86147 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 3.0856 -0.4460 -1.8683 6 6 3.1550 -1.3770 -3.0005 7 6 4.2326 -1.4782 -3.9991 8 8 4.1595 -2.3015 -4.8913 9 7 5.2997 -0.6584 -3.9243 10 6 6.3746 -0.7632 -4.9142 11 6 7.4600 0.2683 -4.5996 12 9 6.9374 1.5234 -4.2697 13 6 8.5229 -0.2380 -3.6102 14 6 9.5644 0.4838 -4.4814 15 1 9.7335 1.5207 -4.1910 16 6 10.8646 -0.3020 -4.6630 17 8 11.7571 -0.0011 -3.5883 18 6 8.5799 0.3247 -5.6521 19 6 2.0165 -2.1250 -2.9440 20 6 1.6162 -3.2350 -3.8863 21 6 0.4958 -4.0477 -3.2251 22 6 -0.5696 -3.0866 -2.6896 23 6 -0.0054 -2.3102 -1.4965 24 7 1.2886 -1.7250 -1.8772 25 1 -0.3933 0.4417 -0.7650 26 1 1.7923 -0.5138 0.8900 27 1 1.5880 2.4585 -1.2242 28 1 1.5615 2.4679 1.2085 29 1 3.8162 0.3028 -1.6003 30 1 5.3582 -0.0020 -3.2125 31 1 6.8041 -1.7645 -4.8797 32 1 5.9718 -0.5747 -5.9093 33 1 8.4235 0.1828 -2.6096 34 1 8.6335 -1.3223 -3.6054 35 1 10.6464 -1.3699 -4.6659 36 1 11.3284 -0.0234 -5.6093 37 1 12.6037 -0.4655 -3.6384 38 1 8.7063 -0.6059 -6.2054 39 1 8.5258 1.1989 -6.3008 40 1 2.4721 -3.8808 -4.0827 41 1 1.2566 -2.8066 -4.8219 42 1 0.9065 -4.6322 -2.4017 43 1 0.0475 -4.7161 -3.9603 44 1 -1.4444 -3.6542 -2.3726 45 1 -0.8557 -2.3874 -3.4754 46 1 0.1341 -2.9871 -0.6536 47 1 -0.6969 -1.5156 -1.2159 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_16915396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:58 Heat of formation + Delta-G solvation = -101.217242 kcal Electronic energy + Delta-G solvation = -30213.240761 eV Core-core repulsion = 25892.021905 eV Total energy + Delta-G solvation = -4321.218856 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.80974 -42.81039 -40.39968 -39.63753 -38.11551 -37.13600 -36.91595 -35.47423 -33.52103 -31.21557 -30.64438 -29.23717 -27.26341 -26.93632 -26.33944 -24.68978 -23.76991 -22.14974 -21.76559 -21.18317 -20.56607 -19.68755 -19.00433 -18.23016 -17.58945 -17.36466 -16.89124 -16.76188 -16.72764 -16.36172 -16.20781 -16.10652 -15.78167 -15.46128 -15.35969 -15.15913 -15.07703 -14.89947 -14.61567 -14.58176 -14.30502 -14.06778 -13.86460 -13.69111 -13.34817 -13.22505 -13.13706 -12.82518 -12.42086 -12.30494 -12.19869 -12.00943 -11.84297 -11.82399 -11.77491 -11.44413 -11.26821 -10.93731 -10.87321 -10.76524 -10.17127 -9.58053 -9.06949 -4.91835 0.69367 1.02882 1.42045 1.65154 1.75895 1.99666 2.31769 2.51608 3.09973 3.16307 3.18349 3.23639 3.41303 3.45197 3.55226 3.60851 3.67402 3.77341 3.80532 3.87419 4.14336 4.30257 4.31748 4.34461 4.39093 4.40581 4.50039 4.50917 4.60688 4.62614 4.65442 4.68702 4.73904 4.76178 4.76937 4.81476 4.89806 4.94073 4.98211 4.99958 5.03693 5.14497 5.19123 5.37135 5.46539 5.70676 5.99645 6.19664 6.31783 6.58667 6.92380 7.29049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.051 4.051 3 Si 0.792 3.208 4 C -0.017 4.017 5 C -0.163 4.163 6 C -0.259 4.259 7 C 0.591 3.409 8 O -0.586 6.586 9 N -0.717 5.717 10 C 0.117 3.883 11 C 0.080 3.920 12 F -0.197 7.197 13 C -0.140 4.140 14 C -0.112 4.112 15 H 0.087 0.913 16 C 0.083 3.917 17 O -0.598 6.598 18 C -0.135 4.135 19 C 0.105 3.895 20 C -0.053 4.053 21 C -0.124 4.124 22 C -0.134 4.134 23 C 0.095 3.905 24 N -0.428 5.428 25 H 0.385 0.615 26 H 0.132 0.868 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.178 0.822 30 H 0.412 0.588 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.397 0.603 38 H 0.124 0.876 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -1.440 0.979 2.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.160 4.160 3 Si 0.696 3.304 4 C -0.126 4.126 5 C -0.186 4.186 6 C -0.268 4.268 7 C 0.382 3.618 8 O -0.468 6.468 9 N -0.369 5.369 10 C -0.007 4.007 11 C 0.062 3.938 12 F -0.177 7.177 13 C -0.178 4.178 14 C -0.131 4.131 15 H 0.105 0.895 16 C 0.006 3.994 17 O -0.407 6.407 18 C -0.173 4.173 19 C -0.014 4.014 20 C -0.091 4.091 21 C -0.162 4.162 22 C -0.171 4.171 23 C -0.025 4.025 24 N -0.104 5.104 25 H 0.235 0.765 26 H 0.150 0.850 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.195 0.805 30 H 0.249 0.751 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.247 0.753 38 H 0.142 0.858 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.126 0.874 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.623 -1.198 1.233 1.828 hybrid contribution -0.600 0.023 -0.451 0.751 sum 0.023 -1.175 0.781 1.411 Atomic orbital electron populations 1.86564 1.18275 1.79804 1.50419 1.24973 0.83304 1.11434 0.96271 0.93471 0.90226 0.70305 0.76420 1.20936 0.96275 0.95497 0.99845 1.21980 0.98490 1.02514 0.95630 1.19951 0.98043 1.06436 1.02400 1.17507 0.81268 0.79685 0.83366 1.90736 1.80055 1.38577 1.37419 1.45532 1.20382 1.38770 1.32199 1.21805 0.86860 0.99224 0.92856 1.22141 0.92331 0.79490 0.99865 1.92841 1.88190 1.43117 1.93588 1.23723 0.92962 1.02446 0.98665 1.22477 0.93269 1.00438 0.96902 0.89502 1.22226 0.89289 0.98430 0.89455 1.86443 1.31645 1.72856 1.49712 1.23578 0.91799 1.05707 0.96196 1.20584 0.91625 0.98105 0.91037 1.20448 0.99607 0.93326 0.95730 1.21702 0.95364 0.97894 1.01216 1.21927 0.99437 0.98775 0.97005 1.22455 0.82027 0.99327 0.98678 1.44046 1.18032 1.27206 1.21111 0.76496 0.85036 1.21953 1.21965 0.80467 0.75140 0.88790 0.91104 0.90160 0.86829 0.91803 0.92381 0.75334 0.85781 0.89369 0.89849 0.90192 0.91444 0.89156 0.87414 0.91081 0.89630 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.73 10.28 -148.98 -1.53 -0.80 16 2 C -0.05 0.12 3.00 71.24 0.21 0.34 16 3 Si 0.79 -2.42 31.11 68.60 2.13 -0.29 16 4 C -0.02 -0.02 6.15 40.99 0.25 0.23 16 5 C -0.16 -0.22 9.09 23.64 0.21 -0.01 16 6 C -0.26 -1.78 6.28 -19.12 -0.12 -1.90 16 7 C 0.59 5.30 7.81 86.62 0.68 5.98 16 8 O -0.59 -8.84 15.34 -4.10 -0.06 -8.90 16 9 N -0.72 -2.22 5.45 -466.51 -2.54 -4.76 16 10 C 0.12 0.09 5.42 86.38 0.47 0.56 16 11 C 0.08 -0.11 1.74 -10.26 -0.02 -0.13 16 12 F -0.20 -0.63 16.58 44.97 0.75 0.12 16 13 C -0.14 0.38 7.08 31.12 0.22 0.60 16 14 C -0.11 0.23 3.99 -10.26 -0.04 0.19 16 15 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 16 C 0.08 -0.30 6.89 71.98 0.50 0.19 16 17 O -0.60 -0.01 13.66 -148.98 -2.04 -2.04 16 18 C -0.13 0.57 7.10 31.12 0.22 0.79 16 19 C 0.11 0.64 6.57 41.69 0.27 0.91 16 20 C -0.05 -0.23 5.32 30.08 0.16 -0.07 16 21 C -0.12 0.16 5.98 30.78 0.18 0.35 16 22 C -0.13 0.51 5.92 30.69 0.18 0.69 16 23 C 0.09 -0.20 6.22 86.32 0.54 0.33 16 24 N -0.43 -1.02 3.11 -493.61 -1.54 -2.56 16 25 H 0.39 -2.17 8.27 -74.06 -0.61 -2.78 16 26 H 0.13 -0.56 7.96 -2.39 -0.02 -0.58 16 27 H -0.29 -0.92 7.11 99.48 0.71 -0.21 16 28 H -0.29 -1.02 7.11 99.48 0.71 -0.31 16 29 H 0.18 -0.93 6.52 -2.91 -0.02 -0.94 16 30 H 0.41 -0.17 7.16 -92.71 -0.66 -0.84 16 31 H 0.09 -0.04 7.84 -2.38 -0.02 -0.05 16 32 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.11 -0.57 7.65 -2.39 -0.02 -0.59 16 35 H 0.06 -0.42 7.85 -2.39 -0.02 -0.44 16 36 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.40 -3.31 9.12 -74.06 -0.68 -3.98 16 38 H 0.12 -1.00 8.06 -2.39 -0.02 -1.02 16 39 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.08 0.63 7.40 -2.39 -0.02 0.61 16 41 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 42 H 0.07 -0.05 8.12 -2.38 -0.02 -0.07 16 43 H 0.09 -0.31 8.14 -2.38 -0.02 -0.33 16 44 H 0.11 -0.80 8.14 -2.39 -0.02 -0.82 16 45 H 0.07 -0.19 8.11 -2.39 -0.02 -0.21 16 46 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 47 H 0.11 -0.46 5.67 -2.39 -0.01 -0.47 16 Total: 0.00 -21.77 377.30 -1.80 -23.57 By element: Atomic # 1 Polarization: -12.50 SS G_CDS: -0.90 Total: -13.40 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 3.92 Total: 9.06 kcal Atomic # 7 Polarization: -3.25 SS G_CDS: -4.08 Total: -7.32 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -3.63 Total: -11.74 kcal Atomic # 9 Polarization: -0.63 SS G_CDS: 0.75 Total: 0.12 kcal Atomic # 14 Polarization: -2.42 SS G_CDS: 2.13 Total: -0.29 kcal Total: -21.77 -1.80 -23.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_16915396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.644 kcal (2) G-P(sol) polarization free energy of solvation -21.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds