Wall clock time and date at job start Sun Mar 7 2021 08:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47115 * 2 1 4 4 C 1.50700 * 109.47339 * 240.00165 * 2 1 3 5 5 C 1.38245 * 119.97404 * 120.01724 * 4 2 1 6 6 C 1.38285 * 120.11180 * 180.02562 * 5 4 2 7 7 C 1.38129 * 120.05478 * 359.68234 * 6 5 4 8 8 C 1.38757 * 119.94241 * 0.59346 * 7 6 5 9 9 O 1.35900 * 120.05447 * 179.69986 * 8 7 6 10 10 C 1.42901 * 117.00022 * 359.72896 * 9 8 7 11 11 C 1.50695 * 109.47230 * 180.02562 * 10 9 8 12 12 C 1.38336 * 119.93134 * 89.99789 * 11 10 9 13 13 C 1.38383 * 120.29722 * 180.02562 * 12 11 10 14 14 C 1.37942 * 120.14154 * 359.97438 * 13 12 11 15 15 C 1.39599 * 119.85119 * 0.28830 * 14 13 12 16 16 C 1.47851 * 120.13940 * 179.71858 * 15 14 13 17 17 O 1.21552 * 119.99301 * 179.97438 * 16 15 14 18 18 N 1.34769 * 120.00080 * 359.97438 * 16 15 14 19 19 C 1.46501 * 119.99912 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47007 * 179.97438 * 19 18 16 21 21 F 1.39904 * 112.85168 * 314.66403 * 20 19 18 22 22 C 1.53783 * 113.61636 * 85.86738 * 20 19 18 23 23 C 1.53952 * 87.02214 * 139.94877 * 22 20 19 24 24 H 1.09002 * 113.53526 * 89.18554 * 23 22 20 25 25 C 1.53000 * 113.74450 * 220.05671 * 23 22 20 26 26 O 1.42899 * 109.46982 * 272.59564 * 25 23 22 27 27 C 1.53788 * 87.11355 * 334.63721 * 23 22 20 28 28 C 1.37979 * 119.92936 * 270.02035 * 11 10 9 29 29 C 1.38173 * 119.96730 * 300.00004 * 4 2 1 30 30 H 0.96693 * 114.00308 * 60.00076 * 1 2 3 31 31 H 1.09002 * 109.47362 * 119.99879 * 2 1 3 32 32 H 1.48506 * 109.99835 * 60.00005 * 3 2 1 33 33 H 1.48497 * 109.99988 * 181.31679 * 3 2 1 34 34 H 1.07999 * 119.94102 * 359.97438 * 5 4 2 35 35 H 1.08002 * 119.97276 * 179.97438 * 6 5 4 36 36 H 1.07995 * 120.02606 * 180.32118 * 7 6 5 37 37 H 1.08996 * 109.47459 * 59.99800 * 10 9 8 38 38 H 1.09002 * 109.46984 * 300.00032 * 10 9 8 39 39 H 1.08002 * 119.85514 * 359.97438 * 12 11 10 40 40 H 1.08000 * 119.93063 * 179.97438 * 13 12 11 41 41 H 1.08002 * 120.06970 * 180.02562 * 14 13 12 42 42 H 0.97000 * 120.00543 * 359.97438 * 18 16 15 43 43 H 1.08992 * 109.47377 * 299.99931 * 19 18 16 44 44 H 1.09005 * 109.46815 * 59.99981 * 19 18 16 45 45 H 1.08998 * 113.61127 * 254.53061 * 22 20 19 46 46 H 1.09000 * 113.61192 * 25.42988 * 22 20 19 47 47 H 1.09000 * 109.46672 * 32.59506 * 25 23 22 48 48 H 1.08995 * 109.46951 * 152.59733 * 25 23 22 49 49 H 0.96702 * 113.99818 * 179.97438 * 26 25 23 50 50 H 1.08997 * 113.61480 * 270.81611 * 27 23 22 51 51 H 1.08999 * 113.61749 * 139.90886 * 27 23 22 52 52 H 1.08004 * 120.06895 * 0.02562 * 28 11 10 53 53 H 1.07988 * 120.03049 * 0.04050 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7264 -0.0381 -2.1399 6 6 3.1886 -0.6870 -3.2702 7 6 2.8620 -2.0110 -3.4899 8 6 2.0594 -2.6863 -2.5816 9 8 1.7317 -3.9873 -2.7986 10 6 2.2436 -4.5958 -3.9859 11 6 1.7792 -6.0277 -4.0568 12 6 0.5881 -6.3365 -4.6889 13 6 0.1542 -7.6488 -4.7579 14 6 0.9083 -8.6581 -4.1964 15 6 2.1086 -8.3527 -3.5523 16 6 2.9188 -9.4288 -2.9428 17 8 3.9637 -9.1599 -2.3830 18 7 2.4989 -10.7077 -3.0080 19 6 3.3020 -11.7741 -2.4046 20 6 2.6057 -13.1197 -2.6175 21 9 1.2348 -13.0715 -2.3426 22 6 2.9409 -13.7804 -3.9651 23 6 2.9943 -15.1180 -3.2048 24 1 2.0321 -15.6275 -3.1523 25 6 4.1302 -16.0382 -3.6562 26 8 3.6878 -16.8371 -4.7553 27 6 3.3275 -14.2999 -1.9459 28 6 2.5428 -7.0279 -3.4907 29 6 1.5972 -2.0332 -1.4485 30 1 -0.3933 0.4416 -0.7650 31 1 1.7924 -0.5138 0.8900 32 1 1.5614 2.4679 1.2086 33 1 3.5345 1.7703 -0.0321 34 1 2.9864 0.9959 -1.9676 35 1 3.8092 -0.1595 -3.9794 36 1 3.2275 -2.5188 -4.3702 37 1 3.3330 -4.5673 -3.9682 38 1 1.8801 -4.0527 -4.8583 39 1 -0.0063 -5.5499 -5.1298 40 1 -0.7768 -7.8831 -5.2525 41 1 0.5688 -9.6819 -4.2514 42 1 1.6648 -10.9223 -3.4544 43 1 4.2865 -11.7961 -2.8717 44 1 3.4108 -11.5867 -1.3363 45 1 2.1315 -13.7227 -4.6929 46 1 3.9028 -13.4725 -4.3750 47 1 4.9845 -15.4360 -3.9653 48 1 4.4224 -16.6866 -2.8302 49 1 4.3585 -17.4457 -5.0942 50 1 4.3953 -14.1343 -1.8028 51 1 2.8298 -14.6612 -1.0460 52 1 3.4721 -6.7854 -2.9968 53 1 0.9758 -2.5578 -0.7380 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_4549630.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:59:18 Heat of formation + Delta-G solvation = -118.918623 kcal Electronic energy + Delta-G solvation = -35882.117275 eV Core-core repulsion = 30793.969986 eV Total energy + Delta-G solvation = -5088.147289 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.172 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -48.92525 -41.58294 -41.18760 -40.02177 -39.61612 -38.86943 -37.25581 -37.21911 -35.83497 -33.60110 -32.46080 -32.35025 -31.11050 -30.23426 -27.85366 -27.31649 -27.01123 -26.61527 -24.74849 -23.66386 -23.19233 -22.27998 -22.19540 -21.40599 -20.66486 -19.22728 -19.13603 -18.29467 -17.86110 -17.71384 -17.39702 -17.19850 -17.10934 -16.95999 -16.91514 -16.53278 -16.44794 -16.16847 -16.11345 -15.90565 -15.53048 -15.46212 -15.14262 -14.97072 -14.86034 -14.76170 -14.49869 -14.39523 -14.20297 -13.90391 -13.86007 -13.52541 -13.45654 -13.41619 -13.22718 -12.91660 -12.83475 -12.59357 -12.40457 -12.20801 -12.02952 -11.95135 -11.91356 -11.65356 -11.57997 -11.37763 -11.16767 -10.83148 -10.52329 -10.44188 -10.07629 -10.02352 -9.92588 -9.26885 -4.99636 -0.32338 0.11166 0.20045 0.39271 1.29322 1.60311 1.64705 1.85175 1.95298 2.22301 2.67044 2.82876 3.00309 3.07534 3.10447 3.31038 3.44455 3.46623 3.55027 3.55946 3.66752 3.74028 3.79343 3.83878 3.95947 4.06243 4.07483 4.15836 4.20894 4.22629 4.24440 4.33049 4.38771 4.40565 4.44850 4.51513 4.52378 4.57736 4.60603 4.64506 4.68750 4.68966 4.81505 4.85284 4.87632 4.95197 4.97352 5.11520 5.15223 5.24475 5.26856 5.34300 5.35054 5.37454 5.43985 5.70828 5.73925 6.25559 6.36185 6.74768 6.87170 6.95214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.083 4.083 3 Si 0.793 3.207 4 C -0.084 4.084 5 C -0.159 4.159 6 C -0.072 4.072 7 C -0.207 4.207 8 C 0.116 3.884 9 O -0.329 6.329 10 C 0.099 3.901 11 C -0.113 4.113 12 C -0.066 4.066 13 C -0.125 4.125 14 C -0.071 4.071 15 C -0.157 4.157 16 C 0.559 3.441 17 O -0.577 6.577 18 N -0.713 5.713 19 C 0.112 3.888 20 C 0.079 3.921 21 F -0.198 7.198 22 C -0.141 4.141 23 C -0.113 4.113 24 H 0.086 0.914 25 C 0.083 3.917 26 O -0.598 6.598 27 C -0.134 4.134 28 C -0.052 4.052 29 C -0.149 4.149 30 H 0.396 0.604 31 H 0.102 0.898 32 H -0.300 1.300 33 H -0.283 1.283 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.151 0.849 42 H 0.413 0.587 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.115 0.885 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.397 0.603 50 H 0.126 0.874 51 H 0.089 0.911 52 H 0.121 0.879 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.452 -0.325 -7.525 7.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.192 4.192 3 Si 0.698 3.302 4 C -0.085 4.085 5 C -0.177 4.177 6 C -0.090 4.090 7 C -0.226 4.226 8 C 0.071 3.929 9 O -0.244 6.244 10 C 0.025 3.975 11 C -0.113 4.113 12 C -0.084 4.084 13 C -0.143 4.143 14 C -0.089 4.089 15 C -0.160 4.160 16 C 0.348 3.652 17 O -0.458 6.458 18 N -0.366 5.366 19 C -0.011 4.011 20 C 0.060 3.940 21 F -0.178 7.178 22 C -0.178 4.178 23 C -0.131 4.131 24 H 0.105 0.895 25 C 0.006 3.994 26 O -0.407 6.407 27 C -0.172 4.172 28 C -0.071 4.071 29 C -0.167 4.167 30 H 0.246 0.754 31 H 0.119 0.881 32 H -0.228 1.228 33 H -0.210 1.210 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.167 0.833 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.171 0.829 40 H 0.181 0.819 41 H 0.169 0.831 42 H 0.251 0.749 43 H 0.118 0.882 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.134 0.866 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.247 0.753 50 H 0.144 0.856 51 H 0.107 0.893 52 H 0.139 0.861 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.053 0.282 -5.945 6.044 hybrid contribution 0.196 -1.348 0.288 1.392 sum 1.249 -1.066 -5.657 5.890 Atomic orbital electron populations 1.86468 1.17240 1.82283 1.50464 1.25370 0.85373 1.11641 0.96805 0.93535 0.77715 0.74411 0.84560 1.20221 0.97781 0.93473 0.96984 1.21187 1.00370 1.00768 0.95338 1.21298 0.97328 0.93483 0.96859 1.21587 1.02720 0.96955 1.01336 1.19182 0.95295 0.83422 0.94959 1.86132 1.71360 1.22879 1.43988 1.21744 0.99263 0.89535 0.86919 1.19542 0.96833 0.93539 1.01427 1.21664 0.93601 0.98079 0.95054 1.21517 1.01116 0.91879 0.99768 1.21663 0.92011 1.01327 0.93949 1.19853 0.97884 0.93376 1.04910 1.18506 0.84709 0.83147 0.78835 1.90772 1.25662 1.83630 1.45712 1.45679 1.26748 1.05770 1.58377 1.21907 0.95455 0.83944 0.99841 1.22173 0.76807 0.94905 1.00100 1.92849 1.32771 1.97391 1.94812 1.23764 1.04425 0.94630 0.95024 1.22512 0.99967 0.94627 0.96042 0.89527 1.22222 0.95408 0.92975 0.88802 1.86440 1.45364 1.57420 1.51486 1.23578 1.03232 0.92500 0.97899 1.21169 0.99290 0.91584 0.95102 1.20294 1.04149 0.94852 0.97449 0.75427 0.88093 1.22782 1.20968 0.83440 0.82405 0.83301 0.90283 0.88350 0.82920 0.81878 0.83116 0.74883 0.88246 0.90777 0.90207 0.86634 0.91712 0.92305 0.75284 0.85617 0.89271 0.86076 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.56 12.77 -148.98 -1.90 -3.47 16 2 C -0.08 -0.17 2.82 71.24 0.20 0.03 16 3 Si 0.79 -1.18 29.79 68.60 2.04 0.86 16 4 C -0.08 -0.24 5.39 -19.88 -0.11 -0.35 16 5 C -0.16 0.11 8.67 22.28 0.19 0.31 16 6 C -0.07 0.13 10.04 22.25 0.22 0.35 16 7 C -0.21 -0.09 9.04 22.37 0.20 0.11 16 8 C 0.12 0.63 6.69 22.51 0.15 0.78 16 9 O -0.33 -2.13 10.12 -92.42 -0.94 -3.06 16 10 C 0.10 0.03 4.86 71.23 0.35 0.37 16 11 C -0.11 -0.22 5.50 -19.90 -0.11 -0.33 16 12 C -0.07 0.13 9.69 22.33 0.22 0.34 16 13 C -0.13 0.45 10.03 22.23 0.22 0.67 16 14 C -0.07 0.11 9.54 22.53 0.21 0.33 16 15 C -0.16 -0.71 5.87 -20.09 -0.12 -0.83 16 16 C 0.56 4.19 7.77 86.79 0.67 4.86 16 17 O -0.58 -8.83 16.35 -3.88 -0.06 -8.89 16 18 N -0.71 -1.00 5.40 -465.98 -2.52 -3.52 16 19 C 0.11 -0.03 5.41 86.38 0.47 0.44 16 20 C 0.08 -0.17 1.71 -10.26 -0.02 -0.19 16 21 F -0.20 -0.52 16.65 44.97 0.75 0.23 16 22 C -0.14 0.49 7.10 31.18 0.22 0.72 16 23 C -0.11 0.29 3.98 -10.21 -0.04 0.24 16 24 H 0.09 0.10 8.14 -2.39 -0.02 0.09 16 25 C 0.08 -0.34 6.89 71.98 0.50 0.16 16 26 O -0.60 0.17 13.66 -148.98 -2.03 -1.86 16 27 C -0.13 0.65 7.10 31.13 0.22 0.87 16 28 C -0.05 -0.31 9.24 22.52 0.21 -0.10 16 29 C -0.15 -0.99 9.55 22.37 0.21 -0.78 16 30 H 0.40 -2.29 8.70 -74.06 -0.64 -2.94 16 31 H 0.10 0.41 7.96 -2.39 -0.02 0.40 16 32 H -0.30 -1.79 7.11 99.48 0.71 -1.08 16 33 H -0.28 -0.76 7.11 99.48 0.71 -0.05 16 34 H 0.15 -0.78 4.87 -2.91 -0.01 -0.80 16 35 H 0.16 -1.19 8.06 -2.91 -0.02 -1.22 16 36 H 0.15 -0.62 6.30 -2.91 -0.02 -0.63 16 37 H 0.08 -0.09 7.59 -2.39 -0.02 -0.11 16 38 H 0.10 -0.47 7.62 -2.39 -0.02 -0.48 16 39 H 0.15 -0.99 8.06 -2.91 -0.02 -1.01 16 40 H 0.16 -1.52 8.06 -2.91 -0.02 -1.54 16 41 H 0.15 -1.05 6.41 -2.91 -0.02 -1.07 16 42 H 0.41 -1.11 6.11 -92.71 -0.57 -1.68 16 43 H 0.10 -0.17 7.88 -2.39 -0.02 -0.19 16 44 H 0.07 0.14 8.14 -2.38 -0.02 0.12 16 45 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H 0.12 -0.70 7.68 -2.39 -0.02 -0.72 16 47 H 0.06 -0.46 7.86 -2.39 -0.02 -0.48 16 48 H 0.06 -0.35 8.14 -2.39 -0.02 -0.36 16 49 H 0.40 -3.41 9.12 -74.06 -0.68 -4.09 16 50 H 0.13 -1.10 8.06 -2.39 -0.02 -1.12 16 51 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 52 H 0.12 1.02 7.65 -2.91 -0.02 0.99 16 53 H 0.12 1.04 8.06 -2.92 -0.02 1.02 16 Total: 0.00 -27.77 442.59 -1.45 -29.22 By element: Atomic # 1 Polarization: -16.65 SS G_CDS: -0.87 Total: -17.52 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 4.08 Total: 8.01 kcal Atomic # 7 Polarization: -1.00 SS G_CDS: -2.52 Total: -3.52 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -4.94 Total: -17.28 kcal Atomic # 9 Polarization: -0.52 SS G_CDS: 0.75 Total: 0.23 kcal Atomic # 14 Polarization: -1.18 SS G_CDS: 2.04 Total: 0.86 kcal Total: -27.77 -1.45 -29.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_4549630.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.702 kcal (2) G-P(sol) polarization free energy of solvation -27.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds