Wall clock time and date at job start Sun Mar 7 2021 08:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.46971 * 2 1 4 4 C 1.50696 * 109.47487 * 120.00516 * 2 1 3 5 5 C 1.38262 * 119.94407 * 64.99414 * 4 2 1 6 6 C 1.38152 * 120.05464 * 179.97438 * 5 4 2 7 7 C 1.38728 * 119.94134 * 0.02562 * 6 5 4 8 8 O 1.35902 * 120.05188 * 180.02562 * 7 6 5 9 9 C 1.42897 * 116.99969 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47419 * 180.02562 * 9 8 7 11 11 C 1.36414 * 125.80407 * 89.99399 * 10 9 8 12 12 C 1.47379 * 127.19304 * 0.02562 * 11 10 9 13 13 O 1.21606 * 119.99839 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99728 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99622 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 14 12 17 17 F 1.39903 * 112.84840 * 316.19544 * 16 15 14 18 18 C 1.53787 * 113.61418 * 87.49925 * 16 15 14 19 19 C 1.53789 * 87.07916 * 139.98375 * 18 16 15 20 20 H 1.09000 * 113.61295 * 89.11693 * 19 18 16 21 21 C 1.52996 * 113.68708 * 220.00816 * 19 18 16 22 22 O 1.42894 * 109.47249 * 272.53285 * 21 19 18 23 23 C 1.53780 * 113.61900 * 184.99939 * 16 15 14 24 24 C 1.47023 * 105.61601 * 180.26425 * 11 10 9 25 25 C 1.34183 * 105.95017 * 359.57370 * 24 11 10 26 26 O 1.33662 * 125.79702 * 269.99921 * 10 9 8 27 27 C 1.38730 * 119.89278 * 0.26927 * 7 6 5 28 28 C 1.38142 * 119.94218 * 359.47666 * 27 7 6 29 29 H 0.96701 * 114.00001 * 59.99354 * 1 2 3 30 30 H 1.08997 * 109.46618 * 240.00527 * 2 1 3 31 31 H 1.48492 * 110.00430 * 298.68390 * 3 2 1 32 32 H 1.48500 * 109.99777 * 60.00916 * 3 2 1 33 33 H 1.08000 * 119.97209 * 359.97438 * 5 4 2 34 34 H 1.08001 * 120.02334 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.47496 * 59.99374 * 9 8 7 36 36 H 1.09000 * 109.47053 * 299.99614 * 9 8 7 37 37 H 0.96996 * 120.00772 * 359.97438 * 14 12 11 38 38 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 39 39 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 40 40 H 1.08998 * 113.61477 * 254.53206 * 18 16 15 41 41 H 1.08992 * 113.61461 * 25.43734 * 18 16 15 42 42 H 1.08998 * 109.47261 * 32.54106 * 21 19 18 43 43 H 1.09003 * 109.46701 * 152.53602 * 21 19 18 44 44 H 0.96708 * 114.00426 * 180.02562 * 22 21 19 45 45 H 1.09004 * 113.61169 * 334.56803 * 23 16 15 46 46 H 1.09003 * 113.61760 * 105.46589 * 23 16 15 47 47 H 1.07993 * 127.02412 * 179.73614 * 24 11 10 48 48 H 1.08003 * 125.43641 * 180.14353 * 25 24 11 49 49 H 1.07998 * 120.02732 * 179.72019 * 27 7 6 50 50 H 1.08002 * 119.97330 * 180.23027 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.6840 -2.0605 1.3970 6 6 2.1440 -2.7143 2.5238 7 6 2.8542 -2.0148 3.4887 8 8 3.3082 -2.6558 4.5977 9 6 4.0313 -1.8725 5.5493 10 6 4.4525 -2.7461 6.7028 11 6 5.6207 -3.4450 6.7896 12 6 6.7047 -3.4958 5.7924 13 8 6.6073 -2.8672 4.7559 14 7 7.8035 -4.2395 6.0287 15 6 8.8813 -4.2895 5.0377 16 6 10.0020 -5.1972 5.5484 17 9 10.3056 -4.9795 6.8966 18 6 9.8050 -6.6799 5.1910 19 6 11.3168 -6.7328 4.9140 20 1 11.9129 -6.9844 5.7912 21 6 11.6878 -7.5650 3.6849 22 8 11.8491 -8.9325 4.0666 23 6 11.2388 -5.2226 4.6348 24 6 5.5700 -4.1417 8.0833 25 6 4.4017 -3.7935 8.6440 26 8 3.7446 -2.9679 7.8147 27 6 3.0958 -0.6589 3.3220 28 6 2.6383 -0.0109 2.1910 29 1 -0.3933 0.4418 -0.7650 30 1 1.7922 -0.5138 -0.8900 31 1 1.5878 2.4587 -1.2241 32 1 1.5616 2.4678 1.2086 33 1 1.1308 -2.6045 0.6458 34 1 1.9502 -3.7688 2.6537 35 1 3.3947 -1.0675 5.9162 36 1 4.9156 -1.4482 5.0737 37 1 7.8811 -4.7412 6.8553 38 1 8.4933 -4.6840 4.0985 39 1 9.2729 -3.2853 4.8758 40 1 9.4940 -7.2950 6.0354 41 1 9.1927 -6.8374 4.3031 42 1 10.8957 -7.4865 2.9404 43 1 12.6214 -7.1931 3.2627 44 1 12.0859 -9.5197 3.3356 45 1 11.0185 -4.9816 3.5948 46 1 12.0853 -4.6611 5.0302 47 1 6.3208 -4.7975 8.4986 48 1 4.0449 -4.1282 9.6069 49 1 3.6445 -0.1113 4.0739 50 1 2.8293 1.0438 2.0590 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_4549634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:59:27 Heat of formation + Delta-G solvation = -124.649491 kcal Electronic energy + Delta-G solvation = -35765.776148 eV Core-core repulsion = 30642.461918 eV Total energy + Delta-G solvation = -5123.314230 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 392.156 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -48.89424 -43.74500 -41.29272 -40.67592 -39.75485 -39.17059 -37.38976 -37.19421 -35.71911 -34.14157 -32.91601 -32.00836 -31.49670 -30.42012 -28.11395 -27.18237 -26.93972 -26.11244 -24.44988 -23.80796 -22.53815 -22.22448 -21.95322 -21.10991 -20.61674 -19.50739 -19.25996 -18.54177 -18.27391 -17.74887 -17.50810 -17.32988 -16.96268 -16.91879 -16.86136 -16.76006 -16.45736 -16.28238 -15.93478 -15.86116 -15.69608 -15.48024 -15.19863 -14.93138 -14.68403 -14.49710 -14.31338 -14.23503 -14.02882 -13.88662 -13.84709 -13.76603 -13.52849 -13.40334 -13.21128 -13.08859 -12.50647 -12.37610 -12.23957 -11.91445 -11.88094 -11.74116 -11.53790 -11.34407 -11.17115 -11.00381 -10.81252 -10.47246 -10.28964 -10.05976 -9.86201 -9.24997 -4.92445 -0.06888 0.25063 0.28851 0.99865 1.30705 1.48604 1.59007 1.93614 1.95398 2.07094 2.44505 2.59482 3.03130 3.10705 3.14535 3.31431 3.34211 3.42993 3.51760 3.59588 3.67608 3.72140 3.81055 3.82533 3.91178 3.95734 4.09790 4.25059 4.27273 4.35819 4.39433 4.43295 4.43926 4.45014 4.51159 4.60007 4.62527 4.63759 4.66479 4.71737 4.77908 4.84531 4.90496 4.94103 4.97957 5.13515 5.17996 5.23604 5.25000 5.37867 5.47452 5.66591 5.85138 6.24200 6.31460 6.60923 6.88970 7.00188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.080 4.080 3 Si 0.759 3.241 4 C -0.123 4.123 5 C -0.058 4.058 6 C -0.162 4.162 7 C 0.124 3.876 8 O -0.321 6.321 9 C 0.134 3.866 10 C 0.044 3.956 11 C -0.224 4.224 12 C 0.586 3.414 13 O -0.564 6.564 14 N -0.710 5.710 15 C 0.115 3.885 16 C 0.080 3.920 17 F -0.198 7.198 18 C -0.143 4.143 19 C -0.114 4.114 20 H 0.086 0.914 21 C 0.083 3.917 22 O -0.599 6.599 23 C -0.133 4.133 24 C -0.200 4.200 25 C -0.010 4.010 26 O -0.177 6.177 27 C -0.205 4.205 28 C -0.079 4.079 29 H 0.394 0.606 30 H 0.095 0.905 31 H -0.284 1.284 32 H -0.298 1.298 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.413 0.587 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.397 0.603 45 H 0.127 0.873 46 H 0.090 0.910 47 H 0.187 0.813 48 H 0.252 0.748 49 H 0.149 0.851 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 -1.496 -1.258 4.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.189 4.189 3 Si 0.664 3.336 4 C -0.123 4.123 5 C -0.076 4.076 6 C -0.180 4.180 7 C 0.079 3.921 8 O -0.235 6.235 9 C 0.060 3.940 10 C -0.009 4.009 11 C -0.229 4.229 12 C 0.375 3.625 13 O -0.445 6.445 14 N -0.362 5.362 15 C -0.009 4.009 16 C 0.061 3.939 17 F -0.178 7.178 18 C -0.180 4.180 19 C -0.132 4.132 20 H 0.104 0.896 21 C 0.006 3.994 22 O -0.408 6.408 23 C -0.170 4.170 24 C -0.219 4.219 25 C -0.076 4.076 26 O -0.072 6.072 27 C -0.223 4.223 28 C -0.097 4.097 29 H 0.244 0.756 30 H 0.113 0.887 31 H -0.211 1.211 32 H -0.226 1.226 33 H 0.160 0.840 34 H 0.154 0.846 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.249 0.751 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.132 0.868 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.247 0.753 45 H 0.145 0.855 46 H 0.109 0.891 47 H 0.204 0.796 48 H 0.268 0.732 49 H 0.166 0.834 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.783 -0.379 -0.715 3.869 hybrid contribution -0.718 -0.600 -0.157 0.949 sum 3.066 -0.979 -0.872 3.334 Atomic orbital electron populations 1.86553 1.18651 1.80651 1.51034 1.24928 0.83927 1.11675 0.98334 0.94160 0.90505 0.72403 0.76485 1.19419 1.01522 0.94427 0.96943 1.20976 0.96393 0.93899 0.96353 1.20633 1.02113 1.01206 0.94055 1.19157 0.94563 0.91643 0.86703 1.86045 1.69033 1.38800 1.29653 1.21160 0.98304 0.90646 0.83865 1.22061 0.90601 1.00153 0.88134 1.21345 0.97262 1.05530 0.98762 1.17342 0.81489 0.78677 0.85000 1.90776 1.80374 1.45615 1.27753 1.45549 1.18002 1.49369 1.23302 1.21905 0.85663 1.00750 0.92590 1.22155 0.96679 0.97188 0.77855 1.92845 1.94171 1.95849 1.34948 1.23743 0.97335 0.93197 1.03773 1.22487 0.96618 0.94872 0.99223 0.89571 1.22231 1.00639 0.81232 0.95326 1.86440 1.93451 1.19696 1.41196 1.23575 0.96490 0.95395 1.01586 1.23229 1.00791 1.04520 0.93318 1.24891 0.92603 0.92823 0.97234 1.83801 1.44491 1.53764 1.25176 1.21385 1.06383 0.93418 1.01162 1.20998 0.96279 1.00007 0.92409 0.75550 0.88674 1.21091 1.22551 0.83984 0.84583 0.88328 0.87081 0.75056 0.88459 0.90225 0.90529 0.86768 0.91761 0.92210 0.75285 0.85523 0.89145 0.79620 0.73180 0.83369 0.83758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.07 12.81 -148.98 -1.91 -3.97 16 2 C -0.08 -0.09 2.79 71.23 0.20 0.11 16 3 Si 0.76 -0.43 29.85 68.60 2.05 1.62 16 4 C -0.12 -0.62 5.39 -19.85 -0.11 -0.73 16 5 C -0.06 -0.34 9.68 22.25 0.22 -0.12 16 6 C -0.16 -1.22 9.99 22.37 0.22 -1.00 16 7 C 0.12 1.07 6.69 22.50 0.15 1.22 16 8 O -0.32 -3.21 10.12 -92.44 -0.94 -4.14 16 9 C 0.13 0.77 4.74 71.24 0.34 1.10 16 10 C 0.04 0.27 7.00 25.26 0.18 0.45 16 11 C -0.22 -1.12 6.31 -18.99 -0.12 -1.24 16 12 C 0.59 3.95 7.81 86.65 0.68 4.63 16 13 O -0.56 -6.99 14.84 -4.05 -0.06 -7.05 16 14 N -0.71 -0.80 5.45 -466.42 -2.54 -3.34 16 15 C 0.11 -0.13 5.42 86.38 0.47 0.34 16 16 C 0.08 -0.20 1.74 -10.27 -0.02 -0.22 16 17 F -0.20 -0.43 16.58 44.97 0.75 0.32 16 18 C -0.14 0.46 7.08 31.13 0.22 0.68 16 19 C -0.11 0.30 3.99 -10.27 -0.04 0.26 16 20 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 21 C 0.08 -0.34 6.89 71.98 0.50 0.15 16 22 O -0.60 0.10 13.66 -148.98 -2.03 -1.93 16 23 C -0.13 0.72 7.10 31.12 0.22 0.94 16 24 C -0.20 0.31 10.60 23.65 0.25 0.56 16 25 C -0.01 0.03 12.03 66.89 0.80 0.83 16 26 O -0.18 -0.68 10.52 4.43 0.05 -0.63 16 27 C -0.21 -1.10 9.04 22.36 0.20 -0.90 16 28 C -0.08 -0.34 8.66 22.25 0.19 -0.15 16 29 H 0.39 -1.81 8.74 -74.06 -0.65 -2.45 16 30 H 0.10 -0.28 7.96 -2.39 -0.02 -0.30 16 31 H -0.28 -0.87 7.11 99.48 0.71 -0.16 16 32 H -0.30 -1.92 7.04 99.48 0.70 -1.22 16 33 H 0.14 0.38 8.06 -2.91 -0.02 0.36 16 34 H 0.14 0.78 8.06 -2.91 -0.02 0.75 16 35 H 0.10 0.13 7.65 -2.39 -0.02 0.12 16 36 H 0.11 0.68 6.01 -2.39 -0.01 0.67 16 37 H 0.41 -0.88 7.20 -92.71 -0.67 -1.55 16 38 H 0.10 -0.20 7.84 -2.39 -0.02 -0.22 16 39 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.11 -0.63 7.66 -2.39 -0.02 -0.65 16 42 H 0.06 -0.45 7.85 -2.39 -0.02 -0.47 16 43 H 0.06 -0.37 8.14 -2.39 -0.02 -0.39 16 44 H 0.40 -3.38 9.12 -74.05 -0.68 -4.06 16 45 H 0.13 -1.20 8.06 -2.38 -0.02 -1.22 16 46 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 47 H 0.19 -1.40 7.74 -2.91 -0.02 -1.43 16 48 H 0.25 -2.98 8.06 -2.91 -0.02 -3.00 16 49 H 0.15 0.16 6.30 -2.91 -0.02 0.14 16 50 H 0.15 0.02 4.86 -2.91 -0.01 0.01 16 Total: 0.00 -26.83 422.80 -1.02 -27.85 By element: Atomic # 1 Polarization: -14.69 SS G_CDS: -0.93 Total: -15.62 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 4.55 Total: 6.91 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -2.54 Total: -3.34 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -4.89 Total: -17.74 kcal Atomic # 9 Polarization: -0.43 SS G_CDS: 0.75 Total: 0.32 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: 2.05 Total: 1.62 kcal Total: -26.83 -1.02 -27.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_4549634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.797 kcal (2) G-P(sol) polarization free energy of solvation -26.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds