Wall clock time and date at job start Sun Mar 7 2021 08:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86297 * 109.47191 * 2 1 4 4 C 1.50696 * 109.47172 * 120.00079 * 2 1 3 5 5 C 1.38240 * 119.97662 * 244.99607 * 4 2 1 6 6 C 1.38288 * 120.11591 * 180.02562 * 5 4 2 7 7 C 1.38119 * 120.05366 * 0.24016 * 6 5 4 8 8 C 1.38758 * 119.94423 * 359.46692 * 7 6 5 9 9 O 1.35898 * 120.05486 * 180.30356 * 8 7 6 10 10 C 1.42901 * 117.00080 * 0.24640 * 9 8 7 11 11 C 1.50701 * 109.47113 * 180.02562 * 10 9 8 12 12 O 1.21283 * 120.00165 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00080 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00183 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47262 * 180.02562 * 14 13 11 16 16 F 1.39904 * 112.84850 * 316.19538 * 15 14 13 17 17 C 1.53777 * 113.61664 * 87.50432 * 15 14 13 18 18 C 1.53780 * 87.08249 * 139.97934 * 17 15 14 19 19 H 1.09006 * 113.61021 * 89.12015 * 18 17 15 20 20 C 1.52997 * 113.69271 * 220.00930 * 18 17 15 21 21 O 1.42908 * 109.46840 * 272.53549 * 20 18 17 22 22 C 1.53778 * 87.08205 * 334.57073 * 18 17 15 23 23 C 1.38172 * 119.97137 * 64.97977 * 4 2 1 24 24 H 0.96702 * 113.99371 * 299.99409 * 1 2 3 25 25 H 1.09000 * 109.46743 * 239.99998 * 2 1 3 26 26 H 1.48502 * 110.00251 * 178.68330 * 3 2 1 27 27 H 1.48499 * 110.00134 * 300.00481 * 3 2 1 28 28 H 1.08006 * 119.93931 * 0.02562 * 5 4 2 29 29 H 1.08002 * 119.96980 * 179.97438 * 6 5 4 30 30 H 1.07998 * 120.02956 * 179.72220 * 7 6 5 31 31 H 1.08998 * 109.47429 * 300.00517 * 10 9 8 32 32 H 1.09004 * 109.46686 * 60.00811 * 10 9 8 33 33 H 0.97001 * 120.00289 * 0.02562 * 13 11 10 34 34 H 1.08998 * 109.47222 * 300.00600 * 14 13 11 35 35 H 1.09002 * 109.47138 * 60.00145 * 14 13 11 36 36 H 1.09001 * 113.61441 * 254.52883 * 17 15 14 37 37 H 1.09004 * 113.61206 * 25.43280 * 17 15 14 38 38 H 1.08998 * 109.47203 * 32.53037 * 20 18 17 39 39 H 1.09001 * 109.47216 * 152.54236 * 20 18 17 40 40 H 0.96706 * 113.99959 * 179.97438 * 21 20 18 41 41 H 1.09006 * 113.61105 * 270.87929 * 22 18 17 42 42 H 1.08998 * 113.69324 * 139.99574 * 22 18 17 43 43 H 1.07998 * 120.02832 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6388 -0.0118 2.1909 6 6 3.1016 -0.6610 3.3208 7 6 2.8621 -2.0107 3.4901 8 6 2.1471 -2.7129 2.5304 9 8 1.9048 -4.0396 2.6976 10 6 2.4113 -4.6466 3.8881 11 6 2.0491 -6.1094 3.8993 12 8 1.4196 -6.5854 2.9784 13 7 2.4255 -6.8889 4.9323 14 6 2.0739 -8.3110 4.9430 15 6 2.6161 -8.9609 6.2175 16 9 3.9246 -8.5651 6.5149 17 6 1.6549 -8.8662 7.4142 18 6 2.0686 -10.3064 7.7598 19 1 2.9380 -10.3657 8.4146 20 6 0.9073 -11.1828 8.2334 21 8 0.7453 -11.0364 9.6457 22 6 2.4062 -10.4834 6.2700 23 6 1.6842 -2.0595 1.3978 24 1 -0.3932 0.4417 0.7651 25 1 1.7923 -0.5138 -0.8900 26 1 3.5347 1.7703 0.0321 27 1 1.5615 2.4679 -1.2084 28 1 2.8304 1.0428 2.0585 29 1 3.6544 -0.1130 4.0695 30 1 3.2276 -2.5182 4.3705 31 1 3.4958 -4.5409 3.9167 32 1 1.9754 -4.1573 4.7591 33 1 2.9293 -6.5084 5.6687 34 1 0.9895 -8.4174 4.9142 35 1 2.5101 -8.7997 4.0717 36 1 1.9589 -8.1333 8.1615 37 1 0.6079 -8.7697 7.1266 38 1 -0.0089 -10.8757 7.7289 39 1 1.1197 -12.2257 7.9983 40 1 0.0246 -11.5645 10.0158 41 1 1.5646 -10.8291 5.6697 42 1 3.3164 -11.0561 6.0922 43 1 1.1309 -2.6047 0.6475 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:59:48 Heat of formation + Delta-G solvation = -146.950723 kcal Electronic energy + Delta-G solvation = -26708.244675 eV Core-core repulsion = 22442.861623 eV Total energy + Delta-G solvation = -4265.383052 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.91127 -41.59103 -40.68756 -39.82173 -38.97092 -37.27909 -37.16825 -35.75009 -32.49238 -31.91951 -30.75405 -29.02830 -27.14654 -26.96363 -26.51749 -23.68859 -22.77832 -22.21628 -21.64440 -20.68223 -19.34913 -18.76700 -18.28620 -17.88186 -17.58324 -17.39009 -17.14345 -16.93904 -16.78321 -16.40752 -16.29547 -16.16000 -15.73556 -15.62548 -15.22783 -14.96921 -14.85682 -14.63353 -14.33722 -14.19566 -14.03465 -13.83911 -13.49525 -13.38052 -13.21299 -12.94119 -12.62208 -12.39450 -12.16437 -12.02914 -11.90939 -11.70587 -11.53789 -11.36426 -11.08838 -10.82600 -10.49562 -10.36305 -9.95017 -9.30309 -4.99155 0.19328 0.37626 1.26201 1.33488 1.40955 1.65883 1.97241 2.49368 2.65990 3.01411 3.08829 3.11322 3.32147 3.44361 3.52180 3.55361 3.67295 3.80519 3.82937 3.97253 4.01633 4.11610 4.22637 4.23778 4.33178 4.33871 4.42567 4.48423 4.52760 4.58724 4.61806 4.62733 4.69847 4.82503 4.88876 4.96183 4.96644 5.13166 5.23130 5.35883 5.36101 5.43678 5.67724 6.18136 6.35475 6.74897 6.87496 6.96996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.086 4.086 3 Si 0.796 3.204 4 C -0.085 4.085 5 C -0.155 4.155 6 C -0.070 4.070 7 C -0.203 4.203 8 C 0.112 3.888 9 O -0.322 6.322 10 C 0.038 3.962 11 C 0.515 3.485 12 O -0.569 6.569 13 N -0.711 5.711 14 C 0.114 3.886 15 C 0.082 3.918 16 F -0.196 7.196 17 C -0.141 4.141 18 C -0.114 4.114 19 H 0.087 0.913 20 C 0.083 3.917 21 O -0.599 6.599 22 C -0.136 4.136 23 C -0.150 4.150 24 H 0.396 0.604 25 H 0.100 0.900 26 H -0.282 1.282 27 H -0.301 1.301 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.159 0.841 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.419 0.581 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.397 0.603 41 H 0.124 0.876 42 H 0.088 0.912 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 1.120 7.900 7.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.195 4.195 3 Si 0.701 3.299 4 C -0.085 4.085 5 C -0.172 4.172 6 C -0.088 4.088 7 C -0.221 4.221 8 C 0.068 3.932 9 O -0.236 6.236 10 C -0.039 4.039 11 C 0.302 3.698 12 O -0.447 6.447 13 N -0.366 5.366 14 C -0.010 4.010 15 C 0.063 3.937 16 F -0.177 7.177 17 C -0.178 4.178 18 C -0.133 4.133 19 H 0.105 0.895 20 C 0.005 3.995 21 O -0.407 6.407 22 C -0.174 4.174 23 C -0.169 4.169 24 H 0.246 0.754 25 H 0.117 0.883 26 H -0.208 1.208 27 H -0.229 1.229 28 H 0.169 0.831 29 H 0.181 0.819 30 H 0.177 0.823 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.257 0.743 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.133 0.867 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.247 0.753 41 H 0.142 0.858 42 H 0.107 0.893 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.032 1.305 6.088 6.312 hybrid contribution 0.049 -1.220 0.019 1.221 sum 1.081 0.086 6.107 6.203 Atomic orbital electron populations 1.86483 1.17330 1.82325 1.50439 1.25428 0.85338 1.11867 0.96834 0.93557 0.77700 0.74083 0.84600 1.20215 0.98227 0.93035 0.97072 1.21220 1.00615 1.00615 0.94767 1.21348 0.96752 0.93460 0.97212 1.21638 1.03467 0.96457 1.00587 1.19201 0.96344 0.82269 0.95433 1.86114 1.74592 1.20948 1.41936 1.22694 1.02485 0.89974 0.88770 1.20503 0.78861 0.88643 0.81810 1.90770 1.40914 1.75946 1.37100 1.45562 1.57871 1.09621 1.23527 1.21879 1.01896 0.80274 0.96954 1.22122 0.78882 0.97345 0.95343 1.92850 1.38475 1.91970 1.94375 1.23736 1.00269 0.97734 0.96066 1.22489 0.98968 0.95649 0.96166 0.89502 1.22231 0.97252 0.98814 0.81162 1.86440 1.59079 1.72464 1.22744 1.23588 1.04854 0.92917 0.96044 1.20303 1.04304 0.94669 0.97610 0.75423 0.88279 1.20835 1.22944 0.83077 0.81856 0.82317 0.85953 0.85439 0.74340 0.88478 0.90780 0.90093 0.86658 0.91745 0.92396 0.75278 0.85753 0.89302 0.87074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.85 12.83 -148.98 -1.91 -3.76 16 2 C -0.09 -0.18 2.80 71.23 0.20 0.02 16 3 Si 0.80 -1.50 29.80 68.60 2.04 0.55 16 4 C -0.08 -0.22 5.35 -19.88 -0.11 -0.32 16 5 C -0.15 0.34 8.67 22.28 0.19 0.53 16 6 C -0.07 0.29 10.04 22.25 0.22 0.51 16 7 C -0.20 0.42 9.04 22.37 0.20 0.62 16 8 C 0.11 0.56 6.69 22.51 0.15 0.71 16 9 O -0.32 -2.48 9.67 -73.36 -0.71 -3.19 16 10 C 0.04 -0.07 5.22 71.24 0.37 0.30 16 11 C 0.52 1.92 7.91 87.66 0.69 2.61 16 12 O -0.57 -8.41 16.50 16.00 0.26 -8.15 16 13 N -0.71 1.77 5.45 -463.07 -2.52 -0.75 16 14 C 0.11 -0.27 5.42 86.38 0.47 0.20 16 15 C 0.08 -0.32 1.74 -10.27 -0.02 -0.33 16 16 F -0.20 -0.10 16.58 44.97 0.75 0.65 16 17 C -0.14 0.68 7.08 31.12 0.22 0.90 16 18 C -0.11 0.39 3.98 -10.27 -0.04 0.35 16 19 H 0.09 0.03 8.14 -2.38 -0.02 0.01 16 20 C 0.08 -0.38 6.89 71.98 0.50 0.11 16 21 O -0.60 0.47 13.66 -148.98 -2.04 -1.56 16 22 C -0.14 0.79 7.10 31.12 0.22 1.01 16 23 C -0.15 -1.07 9.62 22.37 0.22 -0.85 16 24 H 0.40 -2.18 8.70 -74.06 -0.64 -2.82 16 25 H 0.10 0.43 7.96 -2.39 -0.02 0.41 16 26 H -0.28 -0.60 7.11 99.48 0.71 0.10 16 27 H -0.30 -1.76 7.11 99.48 0.71 -1.05 16 28 H 0.15 -1.10 4.90 -2.91 -0.01 -1.12 16 29 H 0.16 -1.71 8.06 -2.91 -0.02 -1.73 16 30 H 0.16 -1.38 6.30 -2.91 -0.02 -1.40 16 31 H 0.12 -0.92 7.65 -2.39 -0.02 -0.94 16 32 H 0.13 -1.09 7.67 -2.38 -0.02 -1.10 16 33 H 0.42 -3.21 8.03 -92.71 -0.74 -3.95 16 34 H 0.10 -0.30 7.84 -2.39 -0.02 -0.32 16 35 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.12 -0.84 7.65 -2.38 -0.02 -0.86 16 38 H 0.06 -0.49 7.85 -2.39 -0.02 -0.51 16 39 H 0.06 -0.36 8.14 -2.39 -0.02 -0.38 16 40 H 0.40 -3.58 9.12 -74.05 -0.68 -4.26 16 41 H 0.12 -1.17 8.06 -2.38 -0.02 -1.19 16 42 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 43 H 0.11 1.18 8.06 -2.91 -0.02 1.16 16 Total: 0.00 -29.00 364.82 -1.59 -30.59 By element: Atomic # 1 Polarization: -19.79 SS G_CDS: -0.96 Total: -20.75 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 3.49 Total: 6.37 kcal Atomic # 7 Polarization: 1.77 SS G_CDS: -2.52 Total: -0.75 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -4.39 Total: -16.66 kcal Atomic # 9 Polarization: -0.10 SS G_CDS: 0.75 Total: 0.65 kcal Atomic # 14 Polarization: -1.50 SS G_CDS: 2.04 Total: 0.55 kcal Total: -29.00 -1.59 -30.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.357 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds