Wall clock time and date at job start Sun Mar 7 2021 09:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33813 * 122.44887 * 2 1 4 4 C 1.50691 * 124.52583 * 359.97438 * 3 2 1 5 5 O 1.42904 * 109.47176 * 45.12884 * 4 3 2 6 6 Si 1.86301 * 109.47679 * 165.13033 * 4 3 2 7 7 S 1.70624 * 110.95092 * 179.97438 * 3 2 1 8 8 C 1.75825 * 91.56357 * 359.97438 * 7 3 2 9 9 C 1.46583 * 125.45480 * 180.02562 * 8 7 3 10 10 O 1.21701 * 119.99711 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00222 * 0.02562 * 9 8 7 12 12 C 1.46500 * 119.99959 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46992 * 180.02562 * 12 11 9 14 14 F 1.39901 * 112.85095 * 314.66851 * 13 12 11 15 15 C 1.53779 * 113.61351 * 85.86646 * 13 12 11 16 16 C 1.54046 * 86.98760 * 140.02036 * 15 13 12 17 17 H 1.08997 * 113.69251 * 89.12633 * 16 15 13 18 18 C 1.53005 * 113.61725 * 220.02437 * 16 15 13 19 19 O 1.42900 * 109.46870 * 272.48922 * 18 16 15 20 20 C 1.53782 * 113.61237 * 183.47178 * 13 12 11 21 21 C 1.36648 * 109.08815 * 0.26084 * 8 7 3 22 22 H 1.09005 * 109.46603 * 84.25599 * 1 2 3 23 23 H 1.08995 * 109.47162 * 204.25616 * 1 2 3 24 24 H 1.08994 * 109.47182 * 324.26157 * 1 2 3 25 25 H 1.09002 * 109.47436 * 285.13366 * 4 3 2 26 26 H 0.96698 * 113.99946 * 179.97438 * 5 4 3 27 27 H 1.48500 * 109.99866 * 300.00488 * 6 4 3 28 28 H 1.48508 * 109.99586 * 61.31635 * 6 4 3 29 29 H 0.96997 * 119.99793 * 0.02562 * 11 9 8 30 30 H 1.09000 * 109.47022 * 60.00355 * 12 11 9 31 31 H 1.08997 * 109.47268 * 300.00522 * 12 11 9 32 32 H 1.09007 * 113.61462 * 254.61521 * 15 13 12 33 33 H 1.09001 * 113.61458 * 25.51138 * 15 13 12 34 34 H 1.08994 * 109.47641 * 32.49139 * 18 16 15 35 35 H 1.09004 * 109.46940 * 152.49385 * 18 16 15 36 36 H 0.96698 * 114.00297 * 180.02562 * 19 18 16 37 37 H 1.08998 * 113.61909 * 334.48393 * 20 13 12 38 38 H 1.09000 * 113.61243 * 105.30396 * 20 13 12 39 39 H 1.07991 * 123.35818 * 179.73657 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6356 2.5161 -0.0006 5 8 0.5741 2.5829 0.9539 6 14 2.9548 3.7518 0.4504 7 16 3.8970 0.7891 0.0007 8 6 3.5937 -0.9428 0.0018 9 6 4.6231 -1.9863 0.0033 10 8 4.3001 -3.1597 0.0035 11 7 5.9273 -1.6464 0.0046 12 6 6.9561 -2.6893 0.0055 13 6 8.3412 -2.0394 0.0075 14 9 8.4492 -0.9878 -0.9090 15 6 8.8539 -1.6862 1.4136 16 6 10.2385 -2.1691 0.9415 17 1 10.8424 -1.3862 0.4828 18 6 11.0034 -2.9663 2.0000 19 8 11.7501 -2.0692 2.8245 20 6 9.4964 -3.0510 -0.0767 21 6 2.2446 -1.1602 -0.0043 22 1 -0.3633 0.1029 -1.0226 23 1 -0.3633 -0.9369 0.4222 24 1 -0.3633 0.8341 0.6002 25 1 1.2469 2.7453 -0.9928 26 1 0.1477 3.4491 1.0079 27 1 3.4929 3.4502 1.8012 28 1 4.0497 3.7146 -0.5523 29 1 6.1847 -0.7112 0.0048 30 1 6.8463 -3.3088 -0.8846 31 1 6.8446 -3.3089 0.8953 32 1 8.8148 -0.6201 1.6376 33 1 8.4226 -2.3017 2.2030 34 1 10.2974 -3.5234 2.6158 35 1 11.6849 -3.6613 1.5093 36 1 12.2611 -2.5065 3.5192 37 1 9.2405 -4.0390 0.3060 38 1 9.9747 -3.0870 -1.0555 39 1 1.8019 -2.1452 -0.0091 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:00:19 Heat of formation + Delta-G solvation = -108.493527 kcal Electronic energy + Delta-G solvation = -23949.038515 eV Core-core repulsion = 20093.157531 eV Total energy + Delta-G solvation = -3855.880984 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.99101 -41.14006 -39.99075 -39.62614 -37.44860 -37.22209 -35.83834 -32.60789 -30.48295 -30.19117 -27.75199 -27.09860 -25.92491 -24.29492 -22.34602 -22.03144 -20.78209 -20.18118 -19.35889 -18.54544 -18.31448 -17.85187 -17.27148 -17.10433 -16.75865 -16.48454 -16.28296 -15.95791 -15.92255 -15.30999 -15.06944 -14.92085 -14.83776 -14.51862 -14.49012 -14.30787 -13.89045 -13.48253 -13.30111 -13.28481 -13.02080 -12.99604 -12.57419 -12.45256 -12.24427 -12.09608 -11.95276 -11.66623 -11.43834 -11.35650 -10.85857 -10.59065 -10.46073 -9.84678 -9.56937 -5.25090 -0.82316 0.15592 0.50128 1.01760 1.22067 1.54056 1.73181 1.86805 1.89013 2.95510 3.01771 3.05125 3.25702 3.27135 3.44281 3.55101 3.71075 3.75555 4.02033 4.15940 4.24113 4.29717 4.36237 4.38993 4.45354 4.53528 4.53635 4.56299 4.65110 4.69715 4.76878 4.80578 4.84238 4.90848 4.94469 5.01737 5.28888 5.30221 5.45928 6.04223 6.76005 6.85787 6.86481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.095 4.095 3 C -0.200 4.200 4 C -0.038 4.038 5 O -0.550 6.550 6 Si 0.752 3.248 7 S 0.180 5.820 8 C -0.280 4.280 9 C 0.594 3.406 10 O -0.560 6.560 11 N -0.719 5.719 12 C 0.112 3.888 13 C 0.075 3.925 14 F -0.199 7.199 15 C -0.145 4.145 16 C -0.111 4.111 17 H 0.086 0.914 18 C 0.084 3.916 19 O -0.599 6.599 20 C -0.130 4.130 21 C -0.051 4.051 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.407 0.593 27 H -0.283 1.283 28 H -0.263 1.263 29 H 0.406 0.594 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.398 0.602 37 H 0.129 0.871 38 H 0.092 0.908 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 3.803 0.748 3.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.107 4.107 3 C -0.319 4.319 4 C -0.150 4.150 5 O -0.362 6.362 6 Si 0.655 3.345 7 S 0.448 5.552 8 C -0.400 4.400 9 C 0.381 3.619 10 O -0.441 6.441 11 N -0.370 5.370 12 C -0.011 4.011 13 C 0.056 3.944 14 F -0.180 7.180 15 C -0.183 4.183 16 C -0.130 4.130 17 H 0.105 0.895 18 C 0.006 3.994 19 O -0.408 6.408 20 C -0.167 4.167 21 C -0.085 4.085 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.117 0.883 25 H 0.128 0.872 26 H 0.260 0.740 27 H -0.210 1.210 28 H -0.188 1.188 29 H 0.242 0.758 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.248 0.752 37 H 0.147 0.853 38 H 0.110 0.890 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.450 3.848 0.629 4.160 hybrid contribution -0.894 -1.245 0.001 1.532 sum 0.556 2.603 0.630 2.735 Atomic orbital electron populations 1.20758 0.87349 1.04369 1.03481 1.18927 0.99533 0.90091 1.02182 1.23608 0.97525 1.00252 1.10517 1.24110 0.98601 0.94868 0.97411 1.86403 1.49750 1.40040 1.59963 0.93868 0.76882 0.85501 0.78287 1.82963 1.04193 0.98541 1.69469 1.24597 0.98019 0.97271 1.20083 1.17057 0.82077 0.87125 0.75649 1.90826 1.82172 1.19343 1.51765 1.45699 1.05010 1.11121 1.75178 1.22000 0.83892 0.90264 1.04933 1.22239 0.95077 0.87191 0.89888 1.92845 1.97034 1.59453 1.68646 1.23818 0.95927 1.03574 0.94966 1.22520 0.95061 0.99009 0.96389 0.89530 1.22225 0.94452 0.91064 0.91631 1.86441 1.66188 1.38633 1.49511 1.23560 0.93201 0.98801 1.01184 1.20923 0.90973 1.00643 0.95975 0.90471 0.91431 0.88293 0.87175 0.74009 1.20962 1.18836 0.75794 0.89958 0.87846 0.90727 0.86527 0.91705 0.92049 0.75238 0.85306 0.88986 0.82589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.13 9.74 71.24 0.69 0.57 16 2 C -0.10 -0.51 5.75 -21.05 -0.12 -0.63 16 3 C -0.20 -0.82 5.65 24.68 0.14 -0.68 16 4 C -0.04 0.11 2.69 71.23 0.19 0.30 16 5 O -0.55 2.27 10.17 -148.98 -1.51 0.75 16 6 Si 0.75 -2.78 30.98 68.60 2.13 -0.65 16 7 S 0.18 0.91 19.36 -56.49 -1.09 -0.18 16 8 C -0.28 -2.40 6.45 24.08 0.16 -2.25 16 9 C 0.59 6.13 7.78 86.42 0.67 6.80 16 10 O -0.56 -9.16 16.84 -4.35 -0.07 -9.23 16 11 N -0.72 -3.64 5.45 -467.17 -2.55 -6.18 16 12 C 0.11 0.16 5.41 86.38 0.47 0.62 16 13 C 0.07 -0.02 1.71 -10.27 -0.02 -0.04 16 14 F -0.20 -1.00 16.64 44.97 0.75 -0.25 16 15 C -0.15 0.19 7.09 31.21 0.22 0.41 16 16 C -0.11 0.15 3.99 -10.17 -0.04 0.11 16 17 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 18 C 0.08 -0.28 6.89 71.98 0.50 0.22 16 19 O -0.60 -0.34 13.66 -148.98 -2.03 -2.38 16 20 C -0.13 0.53 7.10 31.12 0.22 0.75 16 21 C -0.05 -0.40 9.78 21.72 0.21 -0.19 16 22 H 0.08 -0.05 8.14 -2.38 -0.02 -0.07 16 23 H 0.07 0.05 8.10 -2.39 -0.02 0.03 16 24 H 0.10 0.09 5.48 -2.39 -0.01 0.07 16 25 H 0.11 -0.80 7.96 -2.39 -0.02 -0.82 16 26 H 0.41 -6.00 8.74 -74.06 -0.65 -6.65 16 27 H -0.28 -1.17 7.11 99.48 0.71 -0.47 16 28 H -0.26 -0.19 7.11 99.48 0.71 0.51 16 29 H 0.41 1.27 7.19 -92.71 -0.67 0.61 16 30 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.10 -0.06 7.87 -2.39 -0.02 -0.08 16 32 H 0.07 0.07 8.14 -2.38 -0.02 0.05 16 33 H 0.12 -0.48 7.68 -2.39 -0.02 -0.50 16 34 H 0.06 -0.41 7.85 -2.39 -0.02 -0.43 16 35 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H 0.40 -3.14 9.12 -74.06 -0.68 -3.82 16 37 H 0.13 -1.10 8.06 -2.39 -0.02 -1.12 16 38 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H 0.16 1.12 8.06 -2.92 -0.02 1.09 16 Total: 0.00 -22.15 342.30 -1.94 -24.09 By element: Atomic # 1 Polarization: -11.11 SS G_CDS: -0.84 Total: -11.96 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 3.29 Total: 6.00 kcal Atomic # 7 Polarization: -3.64 SS G_CDS: -2.55 Total: -6.18 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -3.62 Total: -10.86 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.75 Total: -0.25 kcal Atomic # 14 Polarization: -2.78 SS G_CDS: 2.13 Total: -0.65 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -1.09 Total: -0.18 kcal Total: -22.15 -1.94 -24.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.408 kcal (2) G-P(sol) polarization free energy of solvation -22.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds