Wall clock time and date at job start Sun Mar 7 2021 09:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86305 * 109.47231 * 2 1 4 4 C 1.50705 * 109.46680 * 119.99633 * 2 1 3 5 5 C 1.34236 * 126.50125 * 254.97030 * 4 2 1 6 6 N 1.36829 * 109.93775 * 180.02562 * 5 4 2 7 7 C 1.46505 * 125.06001 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47064 * 265.02549 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 F 1.39892 * 112.85218 * 48.80278 * 12 11 10 14 14 C 1.53784 * 113.61263 * 180.02562 * 12 11 10 15 15 C 1.53780 * 87.08094 * 139.97882 * 14 12 11 16 16 H 1.08998 * 113.61267 * 89.20042 * 15 14 12 17 17 C 1.53005 * 113.61107 * 220.01590 * 15 14 12 18 18 O 1.42900 * 109.47015 * 185.00052 * 17 15 14 19 19 C 1.53780 * 87.08071 * 334.56286 * 15 14 12 20 20 C 1.37690 * 109.87684 * 0.23517 * 6 5 4 21 21 C 1.39085 * 133.50937 * 180.39569 * 20 6 5 22 22 C 1.37789 * 119.77599 * 179.64821 * 21 20 6 23 23 C 1.38781 * 120.66611 * 359.75257 * 22 21 20 24 24 C 1.36657 * 120.53079 * 0.02562 * 23 22 21 25 25 C 1.39589 * 119.76524 * 359.97438 * 24 23 22 26 26 H 0.96696 * 114.00763 * 300.00445 * 1 2 3 27 27 H 1.09001 * 109.47608 * 239.99764 * 2 1 3 28 28 H 1.48497 * 109.99842 * 178.67869 * 3 2 1 29 29 H 1.48497 * 109.99599 * 299.99624 * 3 2 1 30 30 H 1.08000 * 125.02803 * 0.03430 * 5 4 2 31 31 H 1.09002 * 109.47068 * 145.02580 * 7 6 5 32 32 H 1.09001 * 109.47372 * 25.02493 * 7 6 5 33 33 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 35 35 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 36 36 H 1.09005 * 113.61366 * 254.52860 * 14 12 11 37 37 H 1.08998 * 113.61663 * 25.42399 * 14 12 11 38 38 H 1.08996 * 109.47022 * 305.00118 * 17 15 14 39 39 H 1.09006 * 109.46987 * 65.00315 * 17 15 14 40 40 H 0.96694 * 113.99960 * 180.02562 * 18 17 15 41 41 H 1.08998 * 113.61464 * 270.88146 * 19 15 14 42 42 H 1.09000 * 113.61098 * 139.97948 * 19 15 14 43 43 H 1.08002 * 120.10802 * 359.39935 * 21 20 6 44 44 H 1.07998 * 119.66460 * 179.77406 * 22 21 20 45 45 H 1.08006 * 119.73350 * 179.97438 * 23 22 21 46 46 H 1.08009 * 120.12140 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.4611 -0.1376 2.3228 6 7 2.8034 -1.0989 3.2344 7 6 3.4091 -0.8403 4.5430 8 6 4.9074 -0.9626 4.4360 9 8 5.4188 -1.2382 3.3714 10 7 5.6789 -0.7658 5.5234 11 6 7.1354 -0.8842 5.4192 12 6 7.7679 -0.6154 6.7862 13 9 7.1598 -1.3386 7.8178 14 6 9.3026 -0.7149 6.7851 15 6 9.3041 0.5102 7.7146 16 1 9.2521 0.2553 8.7731 17 6 10.4124 1.5170 7.3997 18 8 10.4060 2.5551 8.3817 19 6 7.9436 0.8797 7.1004 20 6 2.4990 -2.3459 2.7362 21 6 2.6299 -3.6361 3.2391 22 6 2.2162 -4.7107 2.4823 23 6 1.6646 -4.5194 1.2233 24 6 1.5225 -3.2602 0.7117 25 6 1.9348 -2.1571 1.4611 26 1 -0.3934 0.4417 0.7649 27 1 1.7924 -0.5139 -0.8899 28 1 3.5346 1.7702 0.0322 29 1 1.5615 2.4678 -1.2085 30 1 2.5971 0.9248 2.4616 31 1 3.0360 -1.5658 5.2659 32 1 3.1493 0.1661 4.8712 33 1 5.2699 -0.5450 6.3748 34 1 7.5083 -0.1581 4.6968 35 1 7.3955 -1.8903 5.0904 36 1 9.6817 -1.6214 7.2569 37 1 9.7518 -0.5242 5.8105 38 1 11.3776 1.0107 7.4126 39 1 10.2417 1.9487 6.4135 40 1 11.0840 3.2307 8.2443 41 1 8.0214 1.5065 6.2120 42 1 7.2256 1.2605 7.8267 43 1 3.0580 -3.7953 4.2178 44 1 2.3220 -5.7119 2.8731 45 1 1.3457 -5.3726 0.6429 46 1 1.0927 -3.1189 -0.2691 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:00:32 Heat of formation + Delta-G solvation = -70.662647 kcal Electronic energy + Delta-G solvation = -30401.341648 eV Core-core repulsion = 25980.533077 eV Total energy + Delta-G solvation = -4420.808572 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.152 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -48.89830 -42.54190 -40.75252 -39.79013 -38.11451 -37.63400 -37.19706 -35.69933 -34.08915 -31.67785 -30.49673 -30.23354 -28.84590 -27.18076 -26.92342 -25.54659 -23.76036 -22.78431 -22.23548 -21.74820 -20.73034 -20.63448 -18.83915 -18.48041 -18.27936 -17.80510 -17.47053 -17.07428 -16.95960 -16.54694 -16.43051 -16.40000 -16.19586 -15.97696 -15.63737 -15.38210 -15.14168 -14.95000 -14.84520 -14.73121 -14.39905 -14.36745 -14.06044 -13.83085 -13.64034 -13.46348 -13.24047 -13.11501 -12.72198 -12.60169 -12.40386 -12.26191 -12.12815 -11.91352 -11.82758 -11.56487 -11.35445 -11.16763 -10.83359 -10.57032 -10.31908 -10.30529 -9.17287 -8.63996 -5.04546 0.12820 0.61439 1.34036 1.38593 1.41637 1.63603 1.74868 2.00450 2.11287 2.92453 3.01872 3.09884 3.12189 3.32578 3.48954 3.57949 3.65898 3.67927 3.74695 3.81165 3.87391 4.03211 4.15299 4.19348 4.21599 4.28344 4.33018 4.42638 4.47784 4.52691 4.55239 4.58399 4.61247 4.69065 4.70454 4.77219 4.82521 4.87049 4.90001 4.96216 5.11817 5.17569 5.36065 5.48897 5.64299 5.71668 5.74164 6.16490 6.20513 6.38219 6.87072 6.89458 7.02813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.042 4.042 3 Si 0.802 3.198 4 C -0.225 4.225 5 C 0.081 3.919 6 N -0.466 5.466 7 C 0.089 3.911 8 C 0.493 3.507 9 O -0.571 6.571 10 N -0.713 5.713 11 C 0.116 3.884 12 C 0.082 3.918 13 F -0.197 7.197 14 C -0.138 4.138 15 C -0.114 4.114 16 H 0.086 0.914 17 C 0.083 3.917 18 O -0.598 6.598 19 C -0.138 4.138 20 C 0.090 3.910 21 C -0.135 4.135 22 C -0.109 4.109 23 C -0.154 4.154 24 C -0.090 4.090 25 C -0.117 4.117 26 H 0.393 0.607 27 H 0.088 0.912 28 H -0.293 1.293 29 H -0.298 1.298 30 H 0.210 0.790 31 H 0.142 0.858 32 H 0.171 0.829 33 H 0.419 0.581 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.397 0.603 41 H 0.115 0.885 42 H 0.082 0.918 43 H 0.131 0.869 44 H 0.145 0.855 45 H 0.136 0.864 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 5.199 6.719 8.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.151 4.151 3 Si 0.708 3.292 4 C -0.232 4.232 5 C -0.045 4.045 6 N -0.149 5.149 7 C -0.036 4.036 8 C 0.279 3.721 9 O -0.449 6.449 10 N -0.366 5.366 11 C -0.008 4.008 12 C 0.063 3.937 13 F -0.177 7.177 14 C -0.176 4.176 15 C -0.133 4.133 16 H 0.104 0.896 17 C 0.005 3.995 18 O -0.406 6.406 19 C -0.175 4.175 20 C -0.015 4.015 21 C -0.155 4.155 22 C -0.128 4.128 23 C -0.173 4.173 24 C -0.109 4.109 25 C -0.121 4.121 26 H 0.243 0.757 27 H 0.105 0.895 28 H -0.220 1.220 29 H -0.226 1.226 30 H 0.226 0.774 31 H 0.159 0.841 32 H 0.188 0.812 33 H 0.256 0.744 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.140 0.860 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.247 0.753 41 H 0.134 0.866 42 H 0.101 0.899 43 H 0.149 0.851 44 H 0.162 0.838 45 H 0.154 0.846 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.474 4.986 5.572 7.875 hybrid contribution 0.606 -0.778 -0.160 0.999 sum 3.080 4.207 5.412 7.515 Atomic orbital electron populations 1.86449 1.17762 1.82393 1.50213 1.24599 0.84709 1.10491 0.95321 0.94117 0.76687 0.73445 0.84969 1.20795 1.11919 0.91815 0.98676 1.22091 0.98716 0.95381 0.88285 1.43454 1.51980 1.03815 1.15643 1.21989 0.88157 1.09417 0.84016 1.21495 0.90767 0.76256 0.83599 1.90810 1.75835 1.48432 1.29825 1.45707 1.06687 1.71556 1.12697 1.21766 0.80280 1.03226 0.95556 1.22101 0.94106 0.93470 0.83987 1.92855 1.84662 1.79510 1.60709 1.23586 0.92594 0.99099 1.02348 1.22487 0.95355 0.95387 1.00046 0.89550 1.22227 0.97823 0.88150 0.91255 1.86436 1.61129 1.39461 1.53621 1.23698 0.97593 0.93428 1.02787 1.18391 1.01630 0.87075 0.94442 1.20251 1.04657 0.89248 1.01357 1.21120 0.98273 0.99005 0.94368 1.20908 1.02353 0.97028 0.96962 1.20449 0.99254 0.91800 0.99394 1.19375 1.03877 0.93995 0.94867 0.75684 0.89465 1.22043 1.22609 0.77357 0.84077 0.81179 0.74379 0.88726 0.91545 0.89527 0.85955 0.92578 0.91757 0.75281 0.86643 0.89890 0.85087 0.83760 0.84622 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.32 12.88 -148.98 -1.92 -4.24 16 2 C -0.04 -0.17 3.06 71.24 0.22 0.05 16 3 Si 0.80 -0.65 30.75 68.60 2.11 1.46 16 4 C -0.22 -1.27 5.58 -18.62 -0.10 -1.37 16 5 C 0.08 0.02 9.89 83.00 0.82 0.84 16 6 N -0.47 -0.68 2.27 -519.98 -1.18 -1.86 16 7 C 0.09 -0.64 6.48 85.63 0.56 -0.08 16 8 C 0.49 -0.38 7.90 87.66 0.69 0.31 16 9 O -0.57 -6.10 16.42 -3.02 -0.05 -6.14 16 10 N -0.71 3.98 5.47 -463.05 -2.53 1.45 16 11 C 0.12 -0.45 5.36 86.38 0.46 0.01 16 12 C 0.08 -0.41 1.67 -10.27 -0.02 -0.43 16 13 F -0.20 0.05 16.80 44.97 0.76 0.81 16 14 C -0.14 0.87 7.10 31.12 0.22 1.09 16 15 C -0.11 0.48 3.99 -10.27 -0.04 0.43 16 16 H 0.09 -0.03 8.14 -2.39 -0.02 -0.04 16 17 C 0.08 -0.43 6.88 71.98 0.50 0.06 16 18 O -0.60 0.90 13.66 -148.98 -2.04 -1.13 16 19 C -0.14 0.87 7.08 31.12 0.22 1.09 16 20 C 0.09 0.70 6.80 39.03 0.27 0.96 16 21 C -0.13 -0.84 10.00 22.37 0.22 -0.61 16 22 C -0.11 -0.64 10.01 22.29 0.22 -0.42 16 23 C -0.15 -1.17 9.97 22.03 0.22 -0.95 16 24 C -0.09 -0.95 10.05 22.23 0.22 -0.73 16 25 C -0.12 -1.23 6.35 -20.20 -0.13 -1.36 16 26 H 0.39 -1.98 8.70 -74.06 -0.64 -2.63 16 27 H 0.09 0.68 7.96 -2.39 -0.02 0.66 16 28 H -0.29 -1.56 7.11 99.48 0.71 -0.86 16 29 H -0.30 -1.89 7.11 99.48 0.71 -1.18 16 30 H 0.21 -1.88 6.35 -2.91 -0.02 -1.90 16 31 H 0.14 -1.60 8.14 -2.39 -0.02 -1.61 16 32 H 0.17 -2.78 8.12 -2.39 -0.02 -2.80 16 33 H 0.42 -4.46 8.19 -92.71 -0.76 -5.22 16 34 H 0.09 -0.42 7.95 -2.39 -0.02 -0.44 16 35 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.09 -0.45 8.14 -2.38 -0.02 -0.47 16 37 H 0.12 -1.18 8.06 -2.39 -0.02 -1.20 16 38 H 0.06 -0.37 8.14 -2.39 -0.02 -0.39 16 39 H 0.06 -0.53 7.84 -2.38 -0.02 -0.55 16 40 H 0.40 -3.84 9.12 -74.06 -0.68 -4.51 16 41 H 0.12 -1.02 7.72 -2.39 -0.02 -1.04 16 42 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.13 0.22 8.06 -2.91 -0.02 0.20 16 44 H 0.14 0.12 8.06 -2.91 -0.02 0.09 16 45 H 0.14 0.47 8.06 -2.91 -0.02 0.45 16 46 H 0.12 1.13 8.06 -2.91 -0.02 1.11 16 Total: 0.00 -32.29 391.69 -1.31 -33.60 By element: Atomic # 1 Polarization: -21.83 SS G_CDS: -1.01 Total: -22.84 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 4.55 Total: -1.10 kcal Atomic # 7 Polarization: 3.30 SS G_CDS: -3.71 Total: -0.41 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -4.00 Total: -11.52 kcal Atomic # 9 Polarization: 0.05 SS G_CDS: 0.76 Total: 0.81 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: 2.11 Total: 1.46 kcal Total: -32.29 -1.31 -33.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.062 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds