Wall clock time and date at job start Sun Mar 7 2021 09:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37650 * 125.68148 * 2 1 4 4 C 1.46678 * 126.23054 * 0.03029 * 3 2 1 5 5 O 1.21693 * 120.00176 * 354.33134 * 4 3 2 6 6 N 1.34785 * 119.99912 * 174.59719 * 4 3 2 7 7 C 1.46494 * 120.00098 * 184.78839 * 6 4 3 8 8 C 1.52998 * 109.47059 * 180.02562 * 7 6 4 9 9 F 1.39897 * 112.85106 * 48.81007 * 8 7 6 10 10 C 1.53786 * 113.61110 * 179.97438 * 8 7 6 11 11 C 1.53789 * 87.07762 * 139.98259 * 10 8 7 12 12 H 1.08993 * 113.61055 * 220.01822 * 11 10 8 13 13 C 1.53000 * 113.61104 * 89.20141 * 11 10 8 14 14 O 1.42901 * 109.46886 * 174.99797 * 13 11 10 15 15 C 1.53778 * 113.61646 * 277.49533 * 8 7 6 16 16 C 1.37870 * 107.53741 * 179.77328 * 3 2 1 17 17 C 1.39834 * 107.08410 * 0.22313 * 16 3 2 18 18 C 1.35454 * 107.86489 * 0.02562 * 17 16 3 19 19 C 1.50702 * 125.56693 * 180.02562 * 18 17 16 20 20 O 1.42897 * 109.47284 * 149.97396 * 19 18 17 21 21 Si 1.86305 * 109.46770 * 29.97477 * 19 18 17 22 22 H 1.08998 * 109.47352 * 95.84667 * 1 2 3 23 23 H 1.08998 * 109.47621 * 215.85273 * 1 2 3 24 24 H 1.09004 * 109.46951 * 335.85592 * 1 2 3 25 25 H 0.97003 * 119.99829 * 4.79876 * 6 4 3 26 26 H 1.09004 * 109.46976 * 300.00356 * 7 6 4 27 27 H 1.09000 * 109.47364 * 60.00155 * 7 6 4 28 28 H 1.09001 * 113.61344 * 254.52772 * 10 8 7 29 29 H 1.08996 * 113.61804 * 25.35087 * 10 8 7 30 30 H 1.08998 * 109.47193 * 294.99785 * 13 11 10 31 31 H 1.08997 * 109.47492 * 55.00203 * 13 11 10 32 32 H 0.96696 * 114.00492 * 179.97438 * 14 13 11 33 33 H 1.08995 * 113.61183 * 334.57205 * 15 8 7 34 34 H 1.08993 * 113.61516 * 105.47145 * 15 8 7 35 35 H 1.07997 * 126.46300 * 180.19377 * 16 3 2 36 36 H 1.08001 * 126.06786 * 179.97438 * 17 16 3 37 37 H 1.08998 * 109.46969 * 269.97651 * 19 18 17 38 38 H 0.96698 * 114.00418 * 300.00206 * 20 19 18 39 39 H 1.48496 * 110.00066 * 58.68508 * 21 19 18 40 40 H 1.48501 * 109.99617 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2678 1.1181 0.0000 4 6 1.8124 2.5124 0.0006 5 8 0.6266 2.7652 -0.1029 6 7 2.7079 3.5138 0.1105 7 6 2.2470 4.9002 0.2167 8 6 3.4552 5.8322 0.3284 9 9 4.4302 5.5763 -0.6417 10 6 3.0779 7.3185 0.4448 11 6 4.2107 7.4440 1.4773 12 1 3.9599 8.0813 2.3252 13 6 5.5683 7.7845 0.8593 14 8 6.5259 7.9940 1.8991 15 6 4.0175 5.9436 1.7553 16 6 3.5780 0.6888 0.0052 17 6 3.5521 -0.7093 0.0031 18 6 2.2554 -1.1010 -0.0037 19 6 1.7707 -2.5279 -0.0075 20 8 0.5097 -2.6044 0.6603 21 14 3.0074 -3.6061 0.8753 22 1 -0.3634 -0.1047 -1.0223 23 1 -0.3634 -0.8329 0.6019 24 1 -0.3633 0.9378 0.4204 25 1 3.6576 3.3164 0.1190 26 1 1.6689 5.1599 -0.6702 27 1 1.6212 5.0082 1.1027 28 1 3.2547 7.8867 -0.4685 29 1 2.0848 7.4856 0.8617 30 1 5.8954 6.9609 0.2247 31 1 5.4780 8.6908 0.2606 32 1 7.4117 8.2140 1.5796 33 1 3.2818 5.7347 2.5320 34 1 4.9523 5.4022 1.8998 35 1 4.4583 1.3143 0.0095 36 1 4.4132 -1.3612 0.0057 37 1 1.6586 -2.8708 -1.0361 38 1 0.5346 -2.3140 1.5823 39 1 3.1929 -3.1294 2.2693 40 1 2.5413 -5.0160 0.8779 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_10803936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:00:47 Heat of formation + Delta-G solvation = -86.073350 kcal Electronic energy + Delta-G solvation = -24614.254352 eV Core-core repulsion = 20732.993563 eV Total energy + Delta-G solvation = -3881.260789 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.93582 -42.62535 -40.47835 -39.72020 -37.96264 -37.20520 -35.82048 -33.81163 -31.82932 -30.09491 -27.66103 -27.39743 -27.03365 -26.01580 -23.33045 -22.77432 -21.46766 -20.70739 -20.07936 -19.08986 -18.50398 -18.22350 -17.42527 -17.12132 -16.99460 -16.82584 -16.43753 -15.99921 -15.92905 -15.56042 -15.33533 -15.29812 -15.02364 -14.85419 -14.48325 -14.27177 -14.19279 -13.83187 -13.73264 -13.47628 -13.24532 -13.17723 -12.96462 -12.46180 -12.37047 -11.95575 -11.79873 -11.61033 -11.31304 -11.27242 -10.85495 -10.78158 -10.35196 -9.76948 -9.13019 -4.86899 0.30853 1.15302 1.51018 1.71788 1.73839 1.99330 2.25731 2.27169 3.00443 3.10792 3.13608 3.18042 3.25201 3.48604 3.54916 3.69501 3.89722 3.95094 4.21249 4.27880 4.32987 4.37264 4.42702 4.47925 4.52353 4.54061 4.56566 4.65871 4.67656 4.69709 4.86905 4.93015 5.04931 5.06888 5.15780 5.19548 5.29598 5.68209 5.95158 6.11047 6.27318 6.35352 6.84634 6.99830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.406 5.406 3 C -0.086 4.086 4 C 0.588 3.412 5 O -0.584 6.584 6 N -0.706 5.706 7 C 0.116 3.884 8 C 0.081 3.919 9 F -0.193 7.193 10 C -0.134 4.134 11 C -0.116 4.116 12 H 0.093 0.907 13 C 0.082 3.918 14 O -0.593 6.593 15 C -0.142 4.142 16 C -0.126 4.126 17 C -0.200 4.200 18 C 0.008 3.992 19 C -0.067 4.067 20 O -0.546 6.546 21 Si 0.816 3.184 22 H 0.068 0.932 23 H 0.112 0.888 24 H 0.084 0.916 25 H 0.415 0.585 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.397 0.603 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.171 0.829 36 H 0.186 0.814 37 H 0.131 0.869 38 H 0.386 0.614 39 H -0.289 1.289 40 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.885 0.474 0.259 4.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.080 5.080 3 C -0.199 4.199 4 C 0.377 3.623 5 O -0.467 6.467 6 N -0.358 5.358 7 C -0.008 4.008 8 C 0.062 3.938 9 F -0.174 7.174 10 C -0.172 4.172 11 C -0.135 4.135 12 H 0.111 0.889 13 C 0.005 3.995 14 O -0.402 6.402 15 C -0.180 4.180 16 C -0.153 4.153 17 C -0.224 4.224 18 C -0.110 4.110 19 C -0.174 4.174 20 O -0.355 6.355 21 Si 0.719 3.281 22 H 0.087 0.913 23 H 0.131 0.869 24 H 0.103 0.897 25 H 0.253 0.747 26 H 0.092 0.908 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.144 0.856 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.247 0.753 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.188 0.812 36 H 0.203 0.797 37 H 0.149 0.851 38 H 0.236 0.764 39 H -0.216 1.216 40 H -0.224 1.224 Dipole moment (debyes) X Y Z Total from point charges 3.097 -0.163 0.622 3.163 hybrid contribution -0.265 0.673 0.012 0.724 sum 2.831 0.510 0.634 2.946 Atomic orbital electron populations 1.22487 0.75940 1.05592 1.04137 1.43906 1.07093 1.04567 1.52389 1.20153 0.91606 0.87159 1.20983 1.17189 0.85141 0.84354 0.75592 1.90777 1.17898 1.85393 1.52611 1.45376 1.10435 1.05630 1.74329 1.21873 0.95634 0.79192 1.04072 1.22235 0.86324 0.97031 0.88178 1.92831 1.64360 1.95124 1.65050 1.23596 1.00623 0.92284 1.00698 1.22296 0.93984 0.97428 0.99754 0.88870 1.22124 0.88113 1.00164 0.89103 1.86404 1.24165 1.93554 1.36078 1.23670 1.02969 0.96602 0.94713 1.21703 0.94240 0.96016 1.03332 1.21012 0.95504 0.95386 1.10475 1.21486 0.91517 0.89315 1.08644 1.25280 0.93267 0.94070 1.04825 1.86562 1.30509 1.88393 1.30003 0.93257 0.82947 0.73283 0.78649 0.91344 0.86949 0.89707 0.74745 0.90822 0.88519 0.89113 0.85612 0.92620 0.92501 0.75266 0.86791 0.90087 0.81185 0.79741 0.85103 0.76379 1.21600 1.22406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 10.20 127.77 1.30 1.59 16 2 N -0.41 -2.19 3.16 -519.72 -1.64 -3.84 16 3 C -0.09 -0.48 6.88 40.35 0.28 -0.21 16 4 C 0.59 4.37 7.77 86.45 0.67 5.04 16 5 O -0.58 -8.17 14.63 -4.33 -0.06 -8.23 16 6 N -0.71 -0.81 5.45 -467.08 -2.55 -3.36 16 7 C 0.12 -0.09 5.37 86.38 0.46 0.38 16 8 C 0.08 -0.24 1.65 -10.27 -0.02 -0.26 16 9 F -0.19 -0.13 15.02 44.97 0.68 0.55 16 10 C -0.13 0.70 7.13 31.13 0.22 0.92 16 11 C -0.12 0.32 4.19 -10.25 -0.04 0.27 16 12 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 13 C 0.08 -0.12 6.66 71.98 0.48 0.35 16 14 O -0.59 -0.44 13.66 -148.98 -2.03 -2.48 16 15 C -0.14 0.52 7.08 31.13 0.22 0.74 16 16 C -0.13 -0.02 10.35 22.57 0.23 0.21 16 17 C -0.20 0.32 9.37 22.01 0.21 0.52 16 18 C 0.01 0.01 6.15 41.34 0.25 0.26 16 19 C -0.07 0.12 2.99 71.24 0.21 0.33 16 20 O -0.55 -0.21 10.11 -148.98 -1.51 -1.72 16 21 Si 0.82 -3.54 31.10 68.60 2.13 -1.41 16 22 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.11 0.14 5.24 -2.39 -0.01 0.12 16 24 H 0.08 0.68 6.12 -2.39 -0.01 0.66 16 25 H 0.42 -1.09 7.09 -92.71 -0.66 -1.75 16 26 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.10 -0.18 7.94 -2.39 -0.02 -0.20 16 28 H 0.09 -0.48 8.10 -2.39 -0.02 -0.50 16 29 H 0.13 -1.05 8.10 -2.39 -0.02 -1.06 16 30 H 0.06 -0.07 6.32 -2.39 -0.02 -0.08 16 31 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.40 -2.92 9.12 -74.06 -0.68 -3.59 16 33 H 0.11 -0.64 7.96 -2.39 -0.02 -0.66 16 34 H 0.08 -0.17 8.10 -2.39 -0.02 -0.19 16 35 H 0.17 -0.97 7.45 -2.91 -0.02 -0.99 16 36 H 0.19 -1.62 6.85 -2.91 -0.02 -1.64 16 37 H 0.13 -0.44 7.96 -2.39 -0.02 -0.46 16 38 H 0.39 -1.65 8.29 -74.06 -0.61 -2.26 16 39 H -0.29 -0.33 7.11 99.48 0.71 0.38 16 40 H -0.30 -0.80 7.11 99.48 0.71 -0.09 16 Total: 0.00 -21.28 330.37 -1.31 -22.59 By element: Atomic # 1 Polarization: -11.45 SS G_CDS: -0.81 Total: -12.26 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 4.49 Total: 10.15 kcal Atomic # 7 Polarization: -3.00 SS G_CDS: -4.19 Total: -7.19 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -3.61 Total: -12.43 kcal Atomic # 9 Polarization: -0.13 SS G_CDS: 0.68 Total: 0.55 kcal Atomic # 14 Polarization: -3.54 SS G_CDS: 2.13 Total: -1.41 kcal Total: -21.28 -1.31 -22.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_10803936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.481 kcal (2) G-P(sol) polarization free energy of solvation -21.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds