Wall clock time and date at job start Sun Mar 7 2021 09:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86304 * 109.47439 * 2 1 4 4 C 1.50709 * 109.47022 * 240.00336 * 2 1 3 5 5 C 1.36445 * 120.29194 * 240.00189 * 4 2 1 6 6 C 1.40097 * 119.25023 * 179.97438 * 5 4 2 7 7 C 1.40855 * 132.86430 * 179.97438 * 6 5 4 8 8 C 1.46569 * 126.58067 * 359.75243 * 7 6 5 9 9 O 1.21728 * 119.99708 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00342 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00446 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47344 * 180.02562 * 11 10 8 13 13 F 1.39903 * 112.84932 * 316.19306 * 12 11 10 14 14 C 1.53783 * 113.61737 * 87.50265 * 12 11 10 15 15 C 1.53780 * 87.08183 * 89.11586 * 14 12 11 16 16 H 1.08995 * 113.61308 * 270.88757 * 15 14 12 17 17 C 1.53001 * 113.68868 * 139.99345 * 15 14 12 18 18 O 1.42897 * 109.47054 * 87.46717 * 17 15 14 19 19 C 1.53779 * 87.08139 * 25.43431 * 15 14 12 20 20 C 1.40550 * 106.84256 * 180.02562 * 7 6 5 21 21 N 1.30742 * 108.74177 * 359.97438 * 20 7 6 22 22 N 1.36571 * 120.23067 * 359.97438 * 6 5 4 23 23 C 1.36234 * 120.08217 * 0.02562 * 22 6 5 24 24 C 1.35188 * 120.70779 * 359.95806 * 23 22 6 25 25 H 0.96696 * 113.99859 * 59.99570 * 1 2 3 26 26 H 1.09001 * 109.47788 * 120.00473 * 2 1 3 27 27 H 1.48494 * 109.99944 * 60.00283 * 3 2 1 28 28 H 1.48505 * 109.99959 * 181.32166 * 3 2 1 29 29 H 1.08002 * 120.37814 * 0.02562 * 5 4 2 30 30 H 0.97003 * 119.99664 * 0.02562 * 10 8 7 31 31 H 1.09001 * 109.46840 * 300.00123 * 11 10 8 32 32 H 1.09004 * 109.47155 * 59.99330 * 11 10 8 33 33 H 1.08996 * 113.61455 * 203.66587 * 14 12 11 34 34 H 1.09000 * 113.61084 * 334.56324 * 14 12 11 35 35 H 1.09005 * 109.46981 * 207.46008 * 17 15 14 36 36 H 1.08999 * 109.47078 * 327.46385 * 17 15 14 37 37 H 0.96694 * 114.00209 * 180.02562 * 18 17 15 38 38 H 1.09001 * 113.61520 * 220.02145 * 19 15 14 39 39 H 1.09004 * 113.61798 * 89.11825 * 19 15 14 40 40 H 1.08001 * 125.62939 * 179.97438 * 20 7 6 41 41 H 1.08002 * 119.64906 * 179.97438 * 23 22 6 42 42 H 1.07995 * 119.84292 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 2.7161 -1.8203 -1.1124 6 6 3.1705 -2.4639 -2.2708 7 6 3.9747 -3.6007 -2.4826 8 6 4.5804 -4.4468 -1.4503 9 8 4.4053 -4.1903 -0.2732 10 7 5.3312 -5.5086 -1.8041 11 6 5.9361 -6.3545 -0.7723 12 6 6.7313 -7.4800 -1.4371 13 9 6.0491 -8.0680 -2.5077 14 6 8.1840 -7.0971 -1.7655 15 6 8.5510 -7.5969 -0.3583 16 1 8.4820 -6.8271 0.4102 17 6 9.8687 -8.3726 -0.3056 18 8 10.9514 -7.4599 -0.1143 19 6 7.3081 -8.4988 -0.4400 20 6 4.0902 -3.7645 -3.8737 21 7 3.4165 -2.8134 -4.4660 22 7 2.8296 -1.9835 -3.5030 23 6 2.0456 -0.8746 -3.6106 24 6 1.5954 -0.2376 -2.5065 25 1 -0.3933 0.4417 -0.7650 26 1 1.7924 -0.5139 0.8899 27 1 1.5617 2.4678 1.2085 28 1 3.5347 1.7702 -0.0322 29 1 2.9833 -2.1989 -0.1368 30 1 5.4711 -5.7126 -2.7421 31 1 6.6042 -5.7535 -0.1554 32 1 5.1520 -6.7828 -0.1479 33 1 8.6214 -7.6914 -2.5678 34 1 8.3332 -6.0260 -1.9012 35 1 9.8404 -9.0813 0.5221 36 1 10.0100 -8.9128 -1.2418 37 1 11.8198 -7.8831 -0.0716 38 1 6.7502 -8.5592 0.4944 39 1 7.5061 -9.4763 -0.8799 40 1 4.6441 -4.5469 -4.3712 41 1 1.7806 -0.5005 -4.5885 42 1 0.9743 0.6400 -2.6081 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_11618758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:00:49 Heat of formation + Delta-G solvation = -37.989653 kcal Electronic energy + Delta-G solvation = -28409.990780 eV Core-core repulsion = 24080.710724 eV Total energy + Delta-G solvation = -4329.280056 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.132 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -48.76663 -43.34763 -40.72686 -39.91192 -39.30369 -37.24973 -37.22507 -35.55416 -34.24430 -32.12623 -30.99846 -29.63051 -27.65250 -27.08033 -26.69545 -24.90566 -23.71161 -23.06657 -22.79082 -21.39102 -20.29754 -19.15740 -18.55386 -18.27385 -17.99895 -17.78743 -17.35774 -17.10576 -16.90332 -16.66337 -16.49193 -16.08162 -15.88864 -15.79831 -15.63911 -15.39125 -14.92336 -14.79128 -14.51187 -14.31720 -14.24941 -14.02655 -13.84726 -13.51748 -13.39594 -13.16154 -12.81521 -12.44009 -12.36179 -12.25194 -12.14217 -12.02558 -11.60416 -11.54633 -11.36388 -11.10868 -10.84681 -10.80550 -10.30990 -10.27792 -8.84909 -5.07520 -0.60132 -0.13689 0.93572 1.01556 1.19650 1.67749 1.95328 2.01716 2.04429 2.40721 2.98558 3.04255 3.10030 3.19588 3.23217 3.28199 3.44249 3.46250 3.59272 3.71110 3.85169 3.90470 3.91538 4.15215 4.24434 4.31517 4.34909 4.36432 4.37803 4.51847 4.57847 4.61099 4.64869 4.66483 4.71353 4.76559 4.90172 4.99539 5.07105 5.13047 5.24149 5.26801 5.31424 5.64654 6.23113 6.42039 6.76664 6.87051 7.12731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.077 4.077 3 Si 0.817 3.183 4 C -0.052 4.052 5 C -0.135 4.135 6 C 0.153 3.847 7 C -0.350 4.350 8 C 0.600 3.400 9 O -0.591 6.591 10 N -0.716 5.716 11 C 0.124 3.876 12 C 0.080 3.920 13 F -0.205 7.205 14 C -0.142 4.142 15 C -0.110 4.110 16 H 0.097 0.903 17 C 0.084 3.916 18 O -0.598 6.598 19 C -0.134 4.134 20 C 0.131 3.869 21 N -0.336 5.336 22 N -0.272 5.272 23 C 0.115 3.885 24 C -0.144 4.144 25 H 0.401 0.599 26 H 0.106 0.894 27 H -0.289 1.289 28 H -0.303 1.303 29 H 0.138 0.862 30 H 0.412 0.588 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.397 0.603 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.229 0.771 41 H 0.215 0.785 42 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.151 1.998 -4.315 4.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.185 4.185 3 Si 0.721 3.279 4 C -0.058 4.058 5 C -0.155 4.155 6 C 0.032 3.968 7 C -0.364 4.364 8 C 0.391 3.609 9 O -0.473 6.473 10 N -0.368 5.368 11 C -0.001 4.001 12 C 0.062 3.938 13 F -0.185 7.185 14 C -0.180 4.180 15 C -0.128 4.128 16 H 0.115 0.885 17 C 0.007 3.993 18 O -0.406 6.406 19 C -0.172 4.172 20 C -0.050 4.050 21 N -0.156 5.156 22 N -0.036 5.036 23 C -0.010 4.010 24 C -0.165 4.165 25 H 0.252 0.748 26 H 0.123 0.877 27 H -0.216 1.216 28 H -0.231 1.231 29 H 0.156 0.844 30 H 0.249 0.751 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.247 0.753 38 H 0.114 0.886 39 H 0.132 0.868 40 H 0.245 0.755 41 H 0.232 0.768 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.512 3.234 -3.815 5.028 hybrid contribution 1.053 -1.911 0.759 2.310 sum 0.542 1.323 -3.057 3.374 Atomic orbital electron populations 1.86586 1.15877 1.82284 1.50758 1.25346 0.86015 1.11257 0.95897 0.93852 0.76874 0.72148 0.85038 1.20797 0.93934 0.93409 0.97640 1.20646 1.01108 0.96639 0.97147 1.19443 0.95892 0.94450 0.87064 1.19633 1.17914 1.04702 0.94198 1.17027 0.77229 0.79665 0.87028 1.90756 1.63401 1.73061 1.20129 1.45401 1.52167 1.28342 1.10913 1.21589 0.97304 0.90498 0.90663 1.22600 0.90902 0.94154 0.86185 1.92841 1.82363 1.85154 1.58138 1.23721 0.92403 1.03307 0.98526 1.22360 0.93696 0.99040 0.97742 0.88515 1.22191 0.85457 0.90917 1.00728 1.86437 1.19215 1.38557 1.96417 1.23603 0.95285 0.98446 0.99835 1.24515 0.93543 0.95796 0.91152 1.77558 1.19539 1.07180 1.11313 1.46387 1.32414 1.19775 1.04990 1.22513 0.90526 0.83772 1.04208 1.21379 1.03377 1.03567 0.88128 0.74755 0.87696 1.21636 1.23105 0.84419 0.75090 0.89409 0.90619 0.87661 0.90252 0.92095 0.92154 0.75263 0.88621 0.86849 0.75533 0.76808 0.75946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.79 12.88 -148.98 -1.92 -0.13 16 2 C -0.08 0.19 2.84 71.24 0.20 0.39 16 3 Si 0.82 -4.14 31.96 68.60 2.19 -1.94 16 4 C -0.05 0.06 4.53 -19.81 -0.09 -0.03 16 5 C -0.14 -0.95 9.35 22.30 0.21 -0.74 16 6 C 0.15 1.34 6.76 39.50 0.27 1.60 16 7 C -0.35 -3.13 6.17 -19.90 -0.12 -3.25 16 8 C 0.60 6.55 7.78 86.42 0.67 7.22 16 9 O -0.59 -10.60 15.71 -4.44 -0.07 -10.67 16 10 N -0.72 -3.10 5.44 -467.18 -2.54 -5.64 16 11 C 0.12 0.36 5.27 86.38 0.45 0.81 16 12 C 0.08 -0.03 1.91 -10.27 -0.02 -0.05 16 13 F -0.20 -0.60 16.61 44.97 0.75 0.15 16 14 C -0.14 0.23 7.06 31.12 0.22 0.45 16 15 C -0.11 0.22 3.66 -10.27 -0.04 0.18 16 16 H 0.10 0.01 7.72 -2.39 -0.02 -0.01 16 17 C 0.08 -0.26 6.89 71.98 0.50 0.24 16 18 O -0.60 -0.30 13.66 -148.98 -2.03 -2.33 16 19 C -0.13 0.47 7.12 31.12 0.22 0.69 16 20 C 0.13 0.52 11.44 85.42 0.98 1.50 16 21 N -0.34 -2.10 12.57 -56.62 -0.71 -2.81 16 22 N -0.27 -1.24 3.86 -187.28 -0.72 -1.96 16 23 C 0.12 -0.56 11.17 83.31 0.93 0.37 16 24 C -0.14 1.26 8.38 22.03 0.18 1.44 16 25 H 0.40 -5.81 8.08 -74.06 -0.60 -6.41 16 26 H 0.11 0.11 7.71 -2.39 -0.02 0.10 16 27 H -0.29 -0.61 7.11 99.48 0.71 0.10 16 28 H -0.30 -0.95 7.11 99.48 0.71 -0.25 16 29 H 0.14 1.48 7.01 -2.91 -0.02 1.46 16 30 H 0.41 -0.11 6.95 -92.71 -0.64 -0.76 16 31 H 0.09 0.31 7.39 -2.39 -0.02 0.29 16 32 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.10 -0.30 7.90 -2.39 -0.02 -0.32 16 34 H 0.08 -0.02 8.10 -2.39 -0.02 -0.04 16 35 H 0.06 -0.31 8.14 -2.38 -0.02 -0.33 16 36 H 0.06 -0.32 7.85 -2.39 -0.02 -0.34 16 37 H 0.40 -3.11 9.12 -74.06 -0.68 -3.79 16 38 H 0.10 -0.44 8.10 -2.39 -0.02 -0.46 16 39 H 0.11 -0.60 8.10 -2.39 -0.02 -0.62 16 40 H 0.23 -1.04 7.46 -2.91 -0.02 -1.06 16 41 H 0.22 -2.69 8.06 -2.91 -0.02 -2.71 16 42 H 0.22 -4.63 7.31 -2.91 -0.02 -4.65 16 Total: 0.00 -32.75 360.35 -1.27 -34.02 By element: Atomic # 1 Polarization: -18.72 SS G_CDS: -0.78 Total: -19.50 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 4.57 Total: 10.82 kcal Atomic # 7 Polarization: -6.44 SS G_CDS: -3.98 Total: -10.41 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -4.02 Total: -13.13 kcal Atomic # 9 Polarization: -0.60 SS G_CDS: 0.75 Total: 0.15 kcal Atomic # 14 Polarization: -4.14 SS G_CDS: 2.19 Total: -1.94 kcal Total: -32.75 -1.27 -34.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_11618758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.966 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds