Wall clock time and date at job start Sun Mar 7 2021 09:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50699 * 109.46603 * 119.99410 * 2 1 3 5 5 C 1.38423 * 119.89080 * 244.73044 * 4 2 1 6 6 C 1.38251 * 120.33871 * 179.72328 * 5 4 2 7 7 C 1.38274 * 120.11794 * 0.55079 * 6 5 4 8 8 F 1.35095 * 120.11300 * 179.74320 * 7 6 5 9 9 C 1.39868 * 119.78089 * 359.72647 * 7 6 5 10 10 C 1.47686 * 120.16910 * 180.02562 * 9 7 6 11 11 O 1.21570 * 120.00127 * 359.96932 * 10 9 7 12 12 N 1.34779 * 120.00302 * 179.97438 * 10 9 7 13 13 C 1.46492 * 120.00213 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47270 * 179.97438 * 13 12 10 15 15 F 1.39903 * 112.84797 * 314.66649 * 14 13 12 16 16 C 1.53777 * 113.61630 * 85.86238 * 14 13 12 17 17 C 1.54047 * 86.98709 * 89.16192 * 16 14 13 18 18 H 1.08997 * 113.61419 * 270.88755 * 17 16 14 19 19 C 1.52996 * 113.69512 * 139.98911 * 17 16 14 20 20 O 1.42902 * 109.47166 * 87.46911 * 19 17 16 21 21 C 1.53780 * 113.61647 * 183.47216 * 14 13 12 22 22 C 1.37896 * 119.89376 * 65.00227 * 4 2 1 23 23 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 24 24 H 1.08996 * 109.47455 * 239.99290 * 2 1 3 25 25 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 26 26 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 27 27 H 1.08000 * 119.82972 * 359.97438 * 5 4 2 28 28 H 1.08002 * 119.94255 * 180.29396 * 6 5 4 29 29 H 0.97003 * 119.99682 * 359.97438 * 12 10 9 30 30 H 1.09005 * 109.47474 * 299.99567 * 13 12 10 31 31 H 1.09002 * 109.47438 * 59.99312 * 13 12 10 32 32 H 1.09002 * 113.61792 * 203.66981 * 16 14 13 33 33 H 1.08997 * 113.61313 * 334.56785 * 16 14 13 34 34 H 1.09006 * 109.47135 * 207.47049 * 19 17 16 35 35 H 1.08997 * 109.47279 * 327.46760 * 19 17 16 36 36 H 0.96695 * 114.00096 * 179.97438 * 20 19 17 37 37 H 1.09006 * 113.61385 * 25.43289 * 21 14 13 38 38 H 1.08998 * 113.61630 * 156.32983 * 21 14 13 39 39 H 1.07997 * 120.06149 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6442 -0.0102 2.1885 6 6 3.1043 -0.6513 3.3237 7 6 2.8643 -2.0011 3.5037 8 9 3.3185 -2.6286 4.6105 9 6 2.1495 -2.7146 2.5361 10 6 1.8878 -4.1565 2.7199 11 8 2.2945 -4.7262 3.7138 12 7 1.1981 -4.8407 1.7857 13 6 0.9390 -6.2710 1.9677 14 6 0.1432 -6.8012 0.7733 15 9 -0.9191 -5.9648 0.4139 16 6 1.0235 -7.2240 -0.4146 17 6 1.0847 -8.6206 0.2326 18 1 1.9089 -8.7403 0.9357 19 6 0.9905 -9.7693 -0.7736 20 8 2.2971 -10.0872 -1.2572 21 6 -0.2552 -8.2805 0.9064 22 6 1.6840 -2.0568 1.3959 23 1 -0.3934 0.4417 0.7649 24 1 1.7924 -0.5139 -0.8899 25 1 3.5346 1.7703 0.0322 26 1 1.5616 2.4678 -1.2086 27 1 2.8384 1.0432 2.0504 28 1 3.6558 -0.0977 4.0693 29 1 0.8733 -4.3860 0.9928 30 1 1.8862 -6.8056 2.0398 31 1 0.3657 -6.4229 2.8822 32 1 0.5021 -7.2088 -1.3717 33 1 1.9862 -6.7141 -0.4479 34 1 0.5603 -10.6445 -0.2867 35 1 0.3570 -9.4699 -1.6085 36 1 2.3135 -10.8089 -1.9005 37 1 -0.3242 -8.6230 1.9390 38 1 -1.1257 -8.5536 0.3099 39 1 1.1310 -2.6015 0.6450 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_12335834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:00:59 Heat of formation + Delta-G solvation = -155.795866 kcal Electronic energy + Delta-G solvation = -26161.544953 eV Core-core repulsion = 21900.544182 eV Total energy + Delta-G solvation = -4261.000771 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.116 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.05030 -48.81042 -41.44252 -40.30989 -39.76657 -37.47309 -37.26822 -35.78667 -32.94580 -32.32221 -30.01291 -27.42223 -27.04261 -26.63868 -25.17269 -23.16634 -22.78286 -21.68876 -20.40590 -19.31030 -18.41837 -18.34535 -18.25027 -17.84681 -17.29945 -17.04432 -16.81254 -16.70185 -16.41826 -16.07839 -15.96887 -15.72002 -15.67838 -15.53786 -14.92992 -14.71493 -14.46369 -14.41581 -14.38668 -13.88594 -13.70410 -13.46748 -13.20646 -12.91086 -12.82488 -12.40280 -12.18058 -12.17023 -11.89176 -11.61342 -11.41413 -11.28705 -10.85996 -10.55879 -10.46868 -10.26280 -9.86951 -4.96968 -0.55379 -0.07061 1.30454 1.51515 1.67357 1.74601 2.02087 2.41910 2.95753 3.00052 3.03661 3.18119 3.19735 3.33297 3.41389 3.44585 3.55702 3.64686 3.86277 3.97216 4.06239 4.21592 4.29798 4.32974 4.40189 4.45501 4.54644 4.56515 4.62096 4.64721 4.67968 4.73430 4.79394 4.86291 4.91171 4.94133 5.10398 5.10593 5.28576 5.56074 6.15538 6.78434 6.86027 6.87212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.071 4.071 3 Si 0.775 3.225 4 C -0.134 4.134 5 C -0.047 4.047 6 C -0.149 4.149 7 C 0.136 3.864 8 F -0.135 7.135 9 C -0.190 4.190 10 C 0.556 3.444 11 O -0.567 6.567 12 N -0.711 5.711 13 C 0.119 3.881 14 C 0.079 3.921 15 F -0.205 7.205 16 C -0.143 4.143 17 C -0.109 4.109 18 H 0.098 0.902 19 C 0.084 3.916 20 O -0.597 6.597 21 C -0.133 4.133 22 C -0.028 4.028 23 H 0.397 0.603 24 H 0.116 0.884 25 H -0.279 1.279 26 H -0.302 1.302 27 H 0.172 0.828 28 H 0.172 0.828 29 H 0.414 0.586 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.398 0.602 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.539 2.263 -3.277 4.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.181 4.181 3 Si 0.681 3.319 4 C -0.135 4.135 5 C -0.064 4.064 6 C -0.168 4.168 7 C 0.116 3.884 8 F -0.113 7.113 9 C -0.194 4.194 10 C 0.345 3.655 11 O -0.446 6.446 12 N -0.364 5.364 13 C -0.005 4.005 14 C 0.060 3.940 15 F -0.185 7.185 16 C -0.181 4.181 17 C -0.128 4.128 18 H 0.116 0.884 19 C 0.007 3.993 20 O -0.406 6.406 21 C -0.171 4.171 22 C -0.046 4.046 23 H 0.248 0.752 24 H 0.134 0.866 25 H -0.206 1.206 26 H -0.230 1.230 27 H 0.189 0.811 28 H 0.189 0.811 29 H 0.252 0.748 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.247 0.753 37 H 0.116 0.884 38 H 0.132 0.868 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.559 2.574 -3.107 4.325 hybrid contribution -0.162 -1.171 -0.613 1.332 sum -1.721 1.403 -3.720 4.332 Atomic orbital electron populations 1.86504 1.16833 1.82117 1.50636 1.25197 0.85558 1.10828 0.96487 0.93805 0.78027 0.74675 0.85373 1.20491 1.00624 0.94106 0.98265 1.21406 0.93081 1.00965 0.90989 1.21426 1.03136 0.91288 1.00937 1.18179 0.95425 0.91790 0.83029 1.91562 1.86330 1.82966 1.50480 1.19992 1.07229 0.93525 0.98686 1.18311 0.77795 0.86870 0.82557 1.90845 1.52594 1.70948 1.30257 1.45617 1.56312 1.10246 1.24263 1.21685 1.00623 0.80879 0.97284 1.22616 0.85639 0.89728 0.95988 1.92850 1.58658 1.74282 1.92734 1.23778 1.00291 0.96390 0.97637 1.22411 0.98395 0.93886 0.98099 0.88420 1.22189 0.84201 0.96817 0.96114 1.86437 1.29916 1.59298 1.64958 1.23593 0.98420 0.91149 1.03900 1.21165 0.94773 0.94450 0.94240 0.75230 0.86647 1.20601 1.22992 0.81094 0.81086 0.74837 0.89013 0.90152 0.87687 0.90236 0.92036 0.92202 0.75250 0.88450 0.86812 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.50 12.83 -148.98 -1.91 0.59 16 2 C -0.07 0.40 2.80 71.24 0.20 0.60 16 3 Si 0.78 -5.35 29.79 68.60 2.04 -3.31 16 4 C -0.13 0.60 5.35 -19.90 -0.11 0.50 16 5 C -0.05 0.30 8.66 22.32 0.19 0.49 16 6 C -0.15 0.35 10.01 22.28 0.22 0.58 16 7 C 0.14 0.75 7.29 22.67 0.17 0.92 16 8 F -0.14 -1.66 15.55 44.97 0.70 -0.96 16 9 C -0.19 -0.89 5.88 -20.05 -0.12 -1.01 16 10 C 0.56 4.98 7.77 86.74 0.67 5.66 16 11 O -0.57 -9.87 15.34 -3.94 -0.06 -9.93 16 12 N -0.71 -2.07 5.40 -466.13 -2.52 -4.59 16 13 C 0.12 0.21 5.26 86.38 0.45 0.66 16 14 C 0.08 -0.09 1.88 -10.27 -0.02 -0.11 16 15 F -0.20 -0.50 16.67 44.97 0.75 0.25 16 16 C -0.14 0.32 7.09 31.21 0.22 0.54 16 17 C -0.11 0.29 3.66 -10.18 -0.04 0.26 16 18 H 0.10 -0.07 7.69 -2.39 -0.02 -0.09 16 19 C 0.08 -0.30 6.89 71.98 0.50 0.19 16 20 O -0.60 0.01 13.66 -148.98 -2.04 -2.03 16 21 C -0.13 0.57 7.13 31.12 0.22 0.79 16 22 C -0.03 0.04 9.17 22.52 0.21 0.24 16 23 H 0.40 -4.90 8.70 -74.06 -0.64 -5.54 16 24 H 0.12 -0.60 7.96 -2.39 -0.02 -0.61 16 25 H -0.28 0.71 7.11 99.48 0.71 1.42 16 26 H -0.30 -0.54 7.11 99.48 0.71 0.17 16 27 H 0.17 -2.14 4.88 -2.91 -0.01 -2.15 16 28 H 0.17 -1.20 8.06 -2.91 -0.02 -1.22 16 29 H 0.41 -0.50 6.11 -92.71 -0.57 -1.06 16 30 H 0.09 0.21 7.37 -2.38 -0.02 0.19 16 31 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.10 -0.34 7.91 -2.39 -0.02 -0.36 16 33 H 0.08 -0.09 8.10 -2.39 -0.02 -0.11 16 34 H 0.06 -0.35 8.14 -2.38 -0.02 -0.37 16 35 H 0.06 -0.34 7.85 -2.39 -0.02 -0.36 16 36 H 0.40 -3.28 9.12 -74.06 -0.68 -3.95 16 37 H 0.10 -0.54 8.10 -2.38 -0.02 -0.56 16 38 H 0.11 -0.68 8.10 -2.39 -0.02 -0.70 16 39 H 0.15 -0.66 6.40 -2.91 -0.02 -0.68 16 Total: 0.00 -24.46 334.93 -0.98 -25.44 By element: Atomic # 1 Polarization: -15.05 SS G_CDS: -0.72 Total: -15.77 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 2.77 Total: 10.30 kcal Atomic # 7 Polarization: -2.07 SS G_CDS: -2.52 Total: -4.59 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -4.01 Total: -11.37 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 1.45 Total: -0.70 kcal Atomic # 14 Polarization: -5.35 SS G_CDS: 2.04 Total: -3.31 kcal Total: -24.46 -0.98 -25.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_12335834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.355 kcal (2) G-P(sol) polarization free energy of solvation -24.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds