Wall clock time and date at job start Sun Mar 7 2021 09:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86296 * 109.46924 * 2 1 4 4 C 1.50704 * 109.46672 * 119.99850 * 2 1 3 5 5 C 1.38234 * 119.99963 * 65.00082 * 4 2 1 6 6 C 1.38230 * 119.99794 * 180.02562 * 5 4 2 7 7 C 1.38236 * 119.99907 * 359.95588 * 6 5 4 8 8 C 1.50701 * 119.99722 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47355 * 90.00138 * 8 7 6 10 10 O 1.21283 * 119.99488 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 F 1.39903 * 112.85025 * 316.19277 * 13 12 11 15 15 C 1.53782 * 113.61754 * 87.50116 * 13 12 11 16 16 C 1.53772 * 87.08242 * 89.11616 * 15 13 12 17 17 H 1.09003 * 113.61968 * 270.88905 * 16 15 13 18 18 C 1.53002 * 113.69124 * 139.99167 * 16 15 13 19 19 O 1.42898 * 109.47004 * 87.46502 * 18 16 15 20 20 C 1.53781 * 87.08335 * 25.43488 * 16 15 13 21 21 C 1.38228 * 120.00304 * 0.27825 * 7 6 5 22 22 C 1.38233 * 119.99808 * 359.53177 * 21 7 6 23 23 H 0.96696 * 114.00220 * 300.00370 * 1 2 3 24 24 H 1.08995 * 109.47121 * 239.99851 * 2 1 3 25 25 H 1.48503 * 109.99823 * 178.67964 * 3 2 1 26 26 H 1.48503 * 109.99972 * 299.99414 * 3 2 1 27 27 H 1.07999 * 120.00246 * 359.97438 * 5 4 2 28 28 H 1.08001 * 120.00128 * 179.97438 * 6 5 4 29 29 H 1.08998 * 109.47477 * 329.99984 * 8 7 6 30 30 H 1.09002 * 109.47412 * 210.00243 * 8 7 6 31 31 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 32 32 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 33 33 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 34 34 H 1.09007 * 113.61436 * 203.66708 * 15 13 12 35 35 H 1.09001 * 113.61066 * 334.56483 * 15 13 12 36 36 H 1.09005 * 109.47193 * 207.46218 * 18 16 15 37 37 H 1.08992 * 109.47036 * 327.46591 * 18 16 15 38 38 H 0.96699 * 114.00614 * 179.97438 * 19 18 16 39 39 H 1.09001 * 113.61589 * 220.01997 * 20 16 15 40 40 H 1.08997 * 113.69425 * 89.12615 * 20 16 15 41 41 H 1.07997 * 120.00141 * 179.72528 * 21 7 6 42 42 H 1.07999 * 120.00191 * 180.21141 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6846 -2.0602 1.3984 6 6 2.1448 -2.7116 2.5274 7 6 2.8525 -2.0135 3.4880 8 6 3.3547 -2.7239 4.7185 9 6 4.7361 -3.2666 4.4568 10 8 5.2608 -3.0938 3.3770 11 7 5.3879 -3.9447 5.4221 12 6 6.7331 -4.4669 5.1695 13 6 7.2450 -5.1838 6.4204 14 9 6.9830 -4.4755 7.5981 15 6 6.8428 -6.6666 6.4887 16 6 8.1382 -6.9722 5.7185 17 1 8.0178 -6.9503 4.6354 18 6 8.8646 -8.2258 6.2104 19 8 8.3513 -9.3720 5.5288 20 6 8.7007 -5.6654 6.3022 21 6 3.0950 -0.6628 3.3224 22 6 2.6382 -0.0121 2.1916 23 1 -0.3933 0.4417 0.7650 24 1 1.7923 -0.5138 -0.8899 25 1 3.5346 1.7703 0.0322 26 1 1.5615 2.4678 -1.2086 27 1 1.1316 -2.6055 0.6480 28 1 1.9518 -3.7661 2.6588 29 1 2.6820 -3.5457 4.9637 30 1 3.3916 -2.0235 5.5529 31 1 4.9680 -4.0831 6.2855 32 1 6.6999 -5.1689 4.3363 33 1 7.4026 -3.6427 4.9236 34 1 6.8314 -7.0697 7.5014 35 1 5.9368 -6.8994 5.9291 36 1 9.9315 -8.1304 6.0081 37 1 8.7068 -8.3399 7.2827 38 1 8.7673 -10.2046 5.7910 39 1 9.2946 -5.0900 5.5921 40 1 9.1977 -5.7934 7.2638 41 1 3.6440 -0.1165 4.0751 42 1 2.8305 1.0425 2.0606 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_12335836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:02 Heat of formation + Delta-G solvation = -120.371018 kcal Electronic energy + Delta-G solvation = -24957.784962 eV Core-core repulsion = 21012.236684 eV Total energy + Delta-G solvation = -3945.548277 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.76786 -41.23982 -40.37953 -39.83774 -37.66837 -37.24509 -35.55367 -34.06415 -31.94956 -30.70137 -29.31617 -27.21879 -26.96884 -25.42855 -23.82337 -22.87708 -22.26447 -21.37327 -20.25593 -18.51908 -18.31752 -18.23506 -17.79894 -17.24949 -16.79990 -16.70396 -16.64413 -16.30977 -16.01314 -15.82895 -15.66784 -15.59926 -14.93398 -14.77882 -14.66880 -14.54817 -14.35092 -14.10106 -13.87634 -13.45494 -13.27472 -13.04231 -12.86866 -12.77142 -12.37196 -12.26855 -12.15064 -12.01902 -11.72757 -11.55769 -11.36848 -11.08592 -10.85440 -10.45009 -10.26484 -9.88624 -9.63873 -5.04396 0.22256 0.44253 1.28796 1.55470 1.61646 1.92925 2.00251 2.75167 2.99215 3.10155 3.22796 3.26320 3.45352 3.49640 3.62047 3.77338 3.88985 3.90010 3.98951 4.04816 4.24381 4.31384 4.35039 4.36629 4.45616 4.47780 4.51791 4.57674 4.59553 4.64621 4.65641 4.70489 4.71402 4.89380 4.98735 5.01537 5.07817 5.26426 5.30912 5.36508 5.52598 5.57842 6.00387 6.40368 6.75767 6.86085 7.14148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.076 4.076 3 Si 0.782 3.218 4 C -0.128 4.128 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.072 4.072 8 C -0.097 4.097 9 C 0.515 3.485 10 O -0.578 6.578 11 N -0.720 5.720 12 C 0.120 3.880 13 C 0.082 3.918 14 F -0.204 7.204 15 C -0.141 4.141 16 C -0.111 4.111 17 H 0.096 0.904 18 C 0.084 3.916 19 O -0.597 6.597 20 C -0.136 4.136 21 C -0.110 4.110 22 C -0.121 4.121 23 H 0.395 0.605 24 H 0.100 0.900 25 H -0.293 1.293 26 H -0.297 1.297 27 H 0.122 0.878 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.417 0.583 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.398 0.602 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.143 0.857 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.536 -1.435 7.914 8.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.185 4.185 3 Si 0.688 3.312 4 C -0.128 4.128 5 C -0.127 4.127 6 C -0.134 4.134 7 C -0.072 4.072 8 C -0.136 4.136 9 C 0.303 3.697 10 O -0.457 6.457 11 N -0.374 5.374 12 C -0.004 4.004 13 C 0.063 3.937 14 F -0.185 7.185 15 C -0.179 4.179 16 C -0.129 4.129 17 H 0.114 0.886 18 C 0.006 3.994 19 O -0.406 6.406 20 C -0.174 4.174 21 C -0.128 4.128 22 C -0.139 4.139 23 H 0.245 0.755 24 H 0.118 0.882 25 H -0.220 1.220 26 H -0.225 1.225 27 H 0.140 0.860 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.254 0.746 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.248 0.752 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.160 0.840 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.097 -0.578 5.947 6.075 hybrid contribution 0.433 -1.176 0.207 1.270 sum 1.529 -1.755 6.155 6.580 Atomic orbital electron populations 1.86460 1.17117 1.82231 1.50486 1.25186 0.85359 1.10950 0.97037 0.93753 0.77522 0.75297 0.84625 1.20411 1.00232 0.95127 0.97079 1.21094 0.99415 0.94256 0.97901 1.21238 0.98037 1.00261 0.93842 1.19555 0.97569 0.94055 0.96049 1.20756 0.92282 1.02913 0.97680 1.21074 0.88262 0.77080 0.83302 1.90751 1.69744 1.59057 1.26122 1.45784 1.17256 1.56770 1.17579 1.21554 0.84321 0.98734 0.95805 1.22575 0.99105 0.90852 0.81162 1.92844 1.95123 1.81061 1.49425 1.23708 0.99188 0.92284 1.02695 1.22360 0.96114 0.93663 1.00773 0.88569 1.22195 0.96988 0.84584 0.95587 1.86434 1.67079 1.18798 1.68312 1.23610 0.94318 0.95458 1.04040 1.21249 0.99063 0.94305 0.98197 1.21160 0.98513 1.00052 0.94135 0.75456 0.88234 1.22035 1.22523 0.85962 0.85046 0.85151 0.84792 0.74600 0.89690 0.90832 0.87800 0.90044 0.92217 0.92167 0.75249 0.88782 0.86988 0.83959 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.52 12.83 -148.98 -1.91 -3.43 16 2 C -0.08 -0.22 2.80 71.24 0.20 -0.02 16 3 Si 0.78 0.45 29.80 68.60 2.04 2.49 16 4 C -0.13 -0.51 5.35 -19.86 -0.11 -0.61 16 5 C -0.11 -0.57 9.69 22.27 0.22 -0.35 16 6 C -0.12 -0.42 9.70 22.27 0.22 -0.21 16 7 C -0.07 -0.14 4.37 -19.87 -0.09 -0.22 16 8 C -0.10 0.38 5.83 29.10 0.17 0.55 16 9 C 0.51 1.31 7.82 87.66 0.69 2.00 16 10 O -0.58 -7.27 16.03 -3.04 -0.05 -7.32 16 11 N -0.72 1.20 5.45 -463.07 -2.52 -1.32 16 12 C 0.12 -0.06 5.27 86.38 0.45 0.40 16 13 C 0.08 -0.23 1.91 -10.27 -0.02 -0.25 16 14 F -0.20 -0.08 16.61 44.97 0.75 0.67 16 15 C -0.14 0.51 7.06 31.12 0.22 0.73 16 16 C -0.11 0.38 3.66 -10.27 -0.04 0.34 16 17 H 0.10 -0.12 7.72 -2.39 -0.02 -0.14 16 18 C 0.08 -0.34 6.89 71.98 0.50 0.15 16 19 O -0.60 0.29 13.66 -148.98 -2.03 -1.74 16 20 C -0.14 0.68 7.12 31.12 0.22 0.90 16 21 C -0.11 -0.18 9.70 22.27 0.22 0.04 16 22 C -0.12 -0.24 8.67 22.27 0.19 -0.04 16 23 H 0.40 -2.30 8.70 -74.06 -0.64 -2.94 16 24 H 0.10 0.50 7.96 -2.39 -0.02 0.48 16 25 H -0.29 -1.86 7.11 99.48 0.71 -1.15 16 26 H -0.30 -2.22 7.11 99.48 0.71 -1.51 16 27 H 0.12 0.57 8.06 -2.91 -0.02 0.55 16 28 H 0.13 0.08 8.06 -2.91 -0.02 0.06 16 29 H 0.13 -1.14 8.09 -2.39 -0.02 -1.16 16 30 H 0.13 -1.25 8.08 -2.39 -0.02 -1.26 16 31 H 0.42 -2.62 8.03 -92.71 -0.74 -3.37 16 32 H 0.08 0.07 7.39 -2.38 -0.02 0.05 16 33 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.10 -0.47 7.90 -2.38 -0.02 -0.48 16 35 H 0.08 -0.23 8.10 -2.39 -0.02 -0.25 16 36 H 0.06 -0.35 8.14 -2.38 -0.02 -0.37 16 37 H 0.06 -0.38 7.85 -2.39 -0.02 -0.40 16 38 H 0.40 -3.45 9.12 -74.06 -0.68 -4.13 16 39 H 0.09 -0.55 8.10 -2.39 -0.02 -0.57 16 40 H 0.11 -0.73 8.10 -2.39 -0.02 -0.75 16 41 H 0.14 -0.38 8.06 -2.91 -0.02 -0.41 16 42 H 0.14 -0.37 4.91 -2.91 -0.01 -0.38 16 Total: 0.00 -23.67 354.94 -1.65 -25.33 By element: Atomic # 1 Polarization: -17.10 SS G_CDS: -0.96 Total: -18.06 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 3.04 Total: 3.40 kcal Atomic # 7 Polarization: 1.20 SS G_CDS: -2.52 Total: -1.32 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -4.00 Total: -12.50 kcal Atomic # 9 Polarization: -0.08 SS G_CDS: 0.75 Total: 0.67 kcal Atomic # 14 Polarization: 0.45 SS G_CDS: 2.04 Total: 2.49 kcal Total: -23.67 -1.65 -25.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_12335836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.043 kcal (2) G-P(sol) polarization free energy of solvation -23.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds