Wall clock time and date at job start Sun Mar 7 2021 09:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86296 * 109.46840 * 2 1 4 4 C 1.50694 * 109.47179 * 120.00071 * 2 1 3 5 5 C 1.34451 * 126.48388 * 254.97331 * 4 2 1 6 6 N 1.36569 * 109.98699 * 180.02562 * 5 4 2 7 7 C 1.37824 * 109.85990 * 0.02562 * 6 5 4 8 8 C 1.38640 * 133.37873 * 179.97438 * 7 6 5 9 9 C 1.39327 * 119.66765 * 179.97438 * 8 7 6 10 10 C 1.47576 * 119.83079 * 179.97438 * 9 8 7 11 11 O 1.21586 * 120.00532 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99683 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99872 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47207 * 179.97438 * 13 12 10 15 15 F 1.39899 * 112.84938 * 48.80216 * 14 13 12 16 16 C 1.53782 * 113.61769 * 179.97438 * 14 13 12 17 17 C 1.53782 * 87.08171 * 89.11328 * 16 14 13 18 18 H 1.08997 * 113.62021 * 270.80638 * 17 16 14 19 19 C 1.52997 * 113.61310 * 139.98033 * 17 16 14 20 20 O 1.42905 * 109.47264 * 176.53262 * 19 17 16 21 21 C 1.53789 * 87.16933 * 25.39154 * 17 16 14 22 22 C 1.40196 * 120.33223 * 0.25916 * 9 8 7 23 23 C 1.36236 * 120.38178 * 359.47613 * 22 9 8 24 24 C 1.39879 * 119.95489 * 0.52124 * 23 22 9 25 25 H 0.96697 * 113.99605 * 299.99405 * 1 2 3 26 26 H 1.09003 * 109.46605 * 240.00403 * 2 1 3 27 27 H 1.48504 * 109.99896 * 178.68228 * 3 2 1 28 28 H 1.48497 * 110.00335 * 300.00070 * 3 2 1 29 29 H 1.08002 * 125.00509 * 359.97438 * 5 4 2 30 30 H 0.96994 * 125.06654 * 180.02562 * 6 5 4 31 31 H 1.07998 * 120.16943 * 0.02600 * 8 7 6 32 32 H 0.97000 * 120.00404 * 359.97438 * 12 10 9 33 33 H 1.08999 * 109.47334 * 59.99923 * 13 12 10 34 34 H 1.09000 * 109.47578 * 300.00091 * 13 12 10 35 35 H 1.08999 * 113.61170 * 334.57017 * 16 14 13 36 36 H 1.09001 * 113.69568 * 203.67517 * 16 14 13 37 37 H 1.09001 * 109.47289 * 56.53095 * 19 17 16 38 38 H 1.09004 * 109.47261 * 296.53351 * 19 17 16 39 39 H 0.96691 * 114.00079 * 179.97438 * 20 19 17 40 40 H 1.09002 * 113.61165 * 89.15784 * 21 17 16 41 41 H 1.08997 * 113.61030 * 220.05213 * 21 17 16 42 42 H 1.08001 * 119.81143 * 179.74085 * 22 9 8 43 43 H 1.08001 * 120.02072 * 180.27829 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.4621 -0.1364 2.3243 6 7 2.8044 -1.0948 3.2349 7 6 2.4959 -2.3433 2.7391 8 6 2.6331 -3.6280 3.2417 9 6 2.2148 -4.7157 2.4780 10 6 2.3598 -6.0848 3.0093 11 8 2.8435 -6.2616 4.1107 12 7 1.9567 -7.1394 2.2731 13 6 2.1011 -8.4986 2.8003 14 6 1.5706 -9.5024 1.7746 15 9 2.0723 -9.2806 0.4877 16 6 1.6776 -10.9664 2.2331 17 6 0.2845 -10.7897 2.8599 18 1 0.3107 -10.4278 3.8877 19 6 -0.6267 -12.0057 2.6812 20 8 -1.8623 -11.7793 3.3626 21 6 0.0422 -9.6806 1.8224 22 6 1.6625 -4.5163 1.2050 23 6 1.5191 -3.2569 0.7056 24 6 1.9343 -2.1548 1.4604 25 1 -0.3932 0.4416 0.7651 26 1 1.7923 -0.5138 -0.8901 27 1 3.5346 1.7703 0.0321 28 1 1.5615 2.4679 -1.2084 29 1 2.5985 0.9261 2.4620 30 1 3.2048 -0.9226 4.1014 31 1 3.0613 -3.7850 4.2207 32 1 1.5711 -6.9985 1.3943 33 1 1.5335 -8.5915 3.7261 34 1 3.1536 -8.7021 2.9975 35 1 2.4669 -11.1382 2.9649 36 1 1.6991 -11.6823 1.4114 37 1 -0.1398 -12.8886 3.0954 38 1 -0.8204 -12.1618 1.6199 39 1 -2.4904 -12.5110 3.2915 40 1 -0.3846 -10.0432 0.8873 41 1 -0.4869 -8.8160 2.2231 42 1 1.3449 -5.3657 0.6184 43 1 1.0887 -3.1098 -0.2739 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_12335838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:05 Heat of formation + Delta-G solvation = -81.882946 kcal Electronic energy + Delta-G solvation = -28045.422796 eV Core-core repulsion = 23779.665295 eV Total energy + Delta-G solvation = -4265.757501 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.77295 -42.47414 -41.03276 -40.01655 -37.92714 -37.46812 -37.24253 -35.68257 -33.26531 -31.24626 -30.74110 -29.66483 -27.31635 -27.00103 -26.40360 -24.38255 -23.68585 -22.84802 -21.54631 -20.82547 -20.29599 -19.39976 -18.50463 -18.27107 -17.94992 -17.37488 -17.12660 -17.00261 -16.67172 -16.42276 -16.22001 -15.95617 -15.72460 -15.52220 -15.31876 -15.14923 -14.91614 -14.79505 -14.76284 -14.36005 -14.32763 -14.01426 -13.84380 -13.43768 -13.11128 -12.81852 -12.67709 -12.38414 -12.30442 -12.28161 -12.14280 -11.93578 -11.56517 -11.37616 -11.20848 -10.84224 -10.80978 -10.36259 -10.29409 -9.39451 -8.80627 -4.96958 -0.36393 0.33277 1.37840 1.41052 1.71274 1.78843 1.85412 2.06037 2.18467 2.82131 2.99436 3.07921 3.21618 3.25545 3.45372 3.57269 3.61584 3.72508 3.86902 3.90213 3.91497 4.08364 4.23902 4.28012 4.33885 4.34926 4.46009 4.48267 4.54579 4.56904 4.59324 4.64670 4.66901 4.71493 4.75909 4.89807 4.94097 4.99099 5.15817 5.18096 5.31342 5.38238 5.47382 5.59577 5.95378 6.28649 6.54363 6.87709 6.91080 6.98494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.041 4.041 3 Si 0.797 3.203 4 C -0.235 4.235 5 C 0.099 3.901 6 N -0.576 5.576 7 C 0.067 3.933 8 C -0.062 4.062 9 C -0.139 4.139 10 C 0.565 3.435 11 O -0.577 6.577 12 N -0.714 5.714 13 C 0.119 3.881 14 C 0.078 3.922 15 F -0.206 7.206 16 C -0.133 4.133 17 C -0.109 4.109 18 H 0.099 0.901 19 C 0.084 3.916 20 O -0.597 6.597 21 C -0.143 4.143 22 C -0.109 4.109 23 C -0.086 4.086 24 C -0.081 4.081 25 H 0.393 0.607 26 H 0.095 0.905 27 H -0.285 1.285 28 H -0.306 1.306 29 H 0.221 0.779 30 H 0.436 0.564 31 H 0.132 0.868 32 H 0.413 0.587 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.397 0.603 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.144 0.856 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 1.329 0.961 2.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.150 4.150 3 Si 0.703 3.297 4 C -0.243 4.243 5 C -0.031 4.031 6 N -0.179 5.179 7 C -0.040 4.040 8 C -0.083 4.083 9 C -0.144 4.144 10 C 0.354 3.646 11 O -0.458 6.458 12 N -0.367 5.367 13 C -0.005 4.005 14 C 0.059 3.941 15 F -0.187 7.187 16 C -0.171 4.171 17 C -0.128 4.128 18 H 0.117 0.883 19 C 0.007 3.993 20 O -0.406 6.406 21 C -0.181 4.181 22 C -0.129 4.129 23 C -0.104 4.104 24 C -0.086 4.086 25 H 0.243 0.757 26 H 0.113 0.887 27 H -0.211 1.211 28 H -0.234 1.234 29 H 0.237 0.763 30 H 0.276 0.724 31 H 0.150 0.850 32 H 0.251 0.749 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.247 0.753 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.162 0.838 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.451 2.041 1.012 2.323 hybrid contribution -0.033 -1.225 -0.552 1.344 sum -0.484 0.817 0.460 1.055 Atomic orbital electron populations 1.86465 1.17887 1.82329 1.50262 1.24569 0.84633 1.10326 0.95492 0.94052 0.77053 0.73419 0.85222 1.20857 1.12640 0.91387 0.99387 1.22379 0.96945 0.95825 0.87907 1.41809 1.54031 1.03135 1.18916 1.18092 1.03847 0.86938 0.95139 1.20129 0.99454 0.88696 1.00062 1.19393 1.06625 0.91658 0.96686 1.18334 0.76896 0.85279 0.84092 1.90765 1.46418 1.86778 1.21831 1.45648 1.63892 1.05456 1.21657 1.21663 1.02657 0.79757 0.96385 1.22668 0.95878 0.96990 0.78559 1.92848 1.89219 1.96013 1.40588 1.23578 0.97565 0.93619 1.02297 1.22367 0.94759 0.95920 0.99714 0.88311 1.22190 0.84322 0.96555 0.96255 1.86436 1.28603 1.48279 1.77267 1.23745 0.93085 1.00204 1.01032 1.20852 0.99830 0.98013 0.94189 1.20374 0.99212 0.90715 1.00129 1.19586 1.00782 0.94329 0.93917 0.75699 0.88737 1.21150 1.23431 0.76297 0.72362 0.84982 0.74889 0.88892 0.90275 0.88413 0.86925 0.92055 0.92274 0.75265 0.87812 0.90158 0.83807 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.27 12.88 -148.98 -1.92 -2.19 16 2 C -0.04 0.03 3.06 71.23 0.22 0.25 16 3 Si 0.80 -3.71 30.75 68.60 2.11 -1.60 16 4 C -0.24 0.02 5.57 -18.65 -0.10 -0.09 16 5 C 0.10 -0.55 10.43 83.09 0.87 0.31 16 6 N -0.58 1.95 6.07 -187.72 -1.14 0.82 16 7 C 0.07 0.25 7.26 38.96 0.28 0.53 16 8 C -0.06 -0.39 9.61 22.63 0.22 -0.18 16 9 C -0.14 -0.94 5.87 -20.08 -0.12 -1.06 16 10 C 0.56 5.06 7.76 86.71 0.67 5.73 16 11 O -0.58 -9.09 16.31 -3.99 -0.07 -9.16 16 12 N -0.71 -2.49 5.42 -466.23 -2.52 -5.01 16 13 C 0.12 0.22 5.24 86.38 0.45 0.68 16 14 C 0.08 -0.06 1.84 -10.21 -0.02 -0.08 16 15 F -0.21 -0.66 16.82 44.97 0.76 0.10 16 16 C -0.13 0.54 7.13 31.12 0.22 0.76 16 17 C -0.11 0.28 3.65 -10.27 -0.04 0.24 16 18 H 0.10 -0.09 7.66 -2.39 -0.02 -0.11 16 19 C 0.08 -0.29 6.87 71.98 0.49 0.20 16 20 O -0.60 -0.06 13.66 -148.98 -2.04 -2.09 16 21 C -0.14 0.26 7.10 31.18 0.22 0.49 16 22 C -0.11 -0.37 9.46 22.28 0.21 -0.16 16 23 C -0.09 -0.37 10.03 22.20 0.22 -0.15 16 24 C -0.08 -0.38 6.35 -20.14 -0.13 -0.51 16 25 H 0.39 -3.14 8.70 -74.06 -0.64 -3.78 16 26 H 0.10 0.18 7.96 -2.39 -0.02 0.16 16 27 H -0.28 -0.04 7.11 99.48 0.71 0.67 16 28 H -0.31 -1.23 7.11 99.48 0.71 -0.52 16 29 H 0.22 -3.26 6.35 -2.91 -0.02 -3.28 16 30 H 0.44 -4.02 8.96 -92.71 -0.83 -4.85 16 31 H 0.13 0.83 7.62 -2.91 -0.02 0.80 16 32 H 0.41 -0.05 6.17 -92.71 -0.57 -0.62 16 33 H 0.09 0.18 7.34 -2.39 -0.02 0.16 16 34 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.10 -0.54 8.10 -2.39 -0.02 -0.56 16 36 H 0.11 -0.64 8.10 -2.39 -0.02 -0.66 16 37 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.06 -0.32 7.88 -2.38 -0.02 -0.34 16 39 H 0.40 -3.23 9.12 -74.06 -0.68 -3.91 16 40 H 0.10 -0.28 7.92 -2.39 -0.02 -0.30 16 41 H 0.08 -0.06 8.10 -2.39 -0.02 -0.08 16 42 H 0.14 -0.25 6.36 -2.91 -0.02 -0.27 16 43 H 0.14 0.32 8.06 -2.91 -0.02 0.29 16 Total: 0.00 -26.76 364.03 -2.72 -29.49 By element: Atomic # 1 Polarization: -15.73 SS G_CDS: -1.58 Total: -17.31 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 3.68 Total: 6.97 kcal Atomic # 7 Polarization: -0.53 SS G_CDS: -3.66 Total: -4.20 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -4.02 Total: -13.44 kcal Atomic # 9 Polarization: -0.66 SS G_CDS: 0.76 Total: 0.10 kcal Atomic # 14 Polarization: -3.71 SS G_CDS: 2.11 Total: -1.60 kcal Total: -26.76 -2.72 -29.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_12335838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.397 kcal (2) G-P(sol) polarization free energy of solvation -26.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds