Wall clock time and date at job start Sun Mar 7 2021 09:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34856 * 125.89617 * 2 1 4 4 C 1.40940 * 107.46505 * 179.73942 * 3 2 1 5 5 C 1.50704 * 126.26770 * 180.26607 * 4 3 2 6 6 O 1.42899 * 109.46895 * 254.97729 * 5 4 3 7 7 Si 1.86299 * 109.47031 * 14.97459 * 5 4 3 8 8 C 1.34848 * 107.46773 * 0.24328 * 4 3 2 9 9 C 1.50709 * 125.90055 * 179.97438 * 8 4 3 10 10 N 1.36564 * 125.90349 * 180.15527 * 2 1 3 11 11 C 1.40225 * 125.66710 * 0.02562 * 10 2 1 12 12 C 1.38549 * 119.99619 * 65.03120 * 11 10 2 13 13 C 1.39494 * 119.78856 * 179.77111 * 12 11 10 14 14 C 1.47855 * 120.11521 * 180.23214 * 13 12 11 15 15 O 1.21547 * 120.00088 * 0.25093 * 14 13 12 16 16 N 1.34775 * 119.99924 * 180.25370 * 14 13 12 17 17 C 1.46503 * 120.00145 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47650 * 179.97438 * 17 16 14 19 19 F 1.39901 * 112.84880 * 316.19842 * 18 17 16 20 20 C 1.53780 * 113.61091 * 87.49944 * 18 17 16 21 21 C 1.53783 * 87.07733 * 89.12274 * 20 18 17 22 22 H 1.09003 * 113.61286 * 270.88161 * 21 20 18 23 23 C 1.53002 * 113.61419 * 139.98128 * 21 20 18 24 24 O 1.42896 * 109.47232 * 87.50077 * 23 21 20 25 25 C 1.53773 * 113.61712 * 185.00073 * 18 17 16 26 26 C 1.39581 * 119.76985 * 0.48150 * 13 12 11 27 27 C 1.38009 * 119.98837 * 359.77270 * 26 13 12 28 28 C 1.38226 * 120.21470 * 359.97438 * 27 26 13 29 29 H 1.09000 * 109.47696 * 90.01763 * 1 2 3 30 30 H 1.08998 * 109.46970 * 210.02286 * 1 2 3 31 31 H 1.09005 * 109.47423 * 330.01377 * 1 2 3 32 32 H 1.08002 * 126.27067 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.47403 * 134.97431 * 5 4 3 34 34 H 0.96710 * 113.99704 * 179.97438 * 6 5 4 35 35 H 1.48494 * 110.00110 * 300.00382 * 7 5 4 36 36 H 1.48508 * 110.00024 * 61.32016 * 7 5 4 37 37 H 1.08998 * 109.47110 * 90.02529 * 9 8 4 38 38 H 1.08992 * 109.47111 * 210.02788 * 9 8 4 39 39 H 1.09000 * 109.46836 * 330.03038 * 9 8 4 40 40 H 1.08004 * 120.09918 * 0.02562 * 12 11 10 41 41 H 0.96997 * 120.00411 * 359.97438 * 16 14 13 42 42 H 1.08998 * 109.47398 * 300.00049 * 17 16 14 43 43 H 1.09004 * 109.46967 * 59.99832 * 17 16 14 44 44 H 1.09004 * 113.61689 * 203.66531 * 20 18 17 45 45 H 1.08994 * 113.62028 * 334.57497 * 20 18 17 46 46 H 1.08998 * 109.46883 * 207.49994 * 23 21 20 47 47 H 1.08998 * 109.46935 * 327.49919 * 23 21 20 48 48 H 0.96707 * 113.99994 * 179.97438 * 24 23 21 49 49 H 1.08996 * 113.61423 * 25.43226 * 25 18 17 50 50 H 1.09002 * 113.61734 * 156.33806 * 25 18 17 51 51 H 1.08000 * 120.00316 * 179.79000 * 26 13 12 52 52 H 1.08005 * 119.89486 * 180.02562 * 27 26 13 53 53 H 1.08006 * 119.88320 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2976 1.0924 0.0000 4 6 3.6347 0.6468 0.0061 5 6 4.8646 1.5177 0.0140 6 8 5.4618 1.5102 -1.2842 7 14 4.3885 3.2606 0.4684 8 6 3.6121 -0.7014 0.0042 9 6 4.8178 -1.6056 0.0084 10 7 2.3078 -1.1062 -0.0030 11 6 1.8645 -2.4365 -0.0071 12 6 1.1654 -2.9303 -1.0966 13 6 0.7305 -4.2557 -1.0982 14 6 -0.0116 -4.7916 -2.2592 15 8 -0.2399 -4.0783 -3.2165 16 7 -0.4351 -6.0711 -2.2561 17 6 -1.1710 -6.6020 -3.4063 18 6 -1.5317 -8.0665 -3.1493 19 9 -0.4726 -8.7989 -2.6022 20 6 -2.8622 -8.2509 -2.4006 21 6 -3.5445 -8.2694 -3.7787 22 1 -3.8378 -7.2815 -4.1340 23 6 -4.6685 -9.3012 -3.8924 24 8 -5.8953 -8.7202 -3.4457 25 6 -2.2019 -8.7556 -4.3495 26 6 0.9940 -5.0728 0.0024 27 6 1.6866 -4.5698 1.0849 28 6 2.1218 -3.2578 1.0837 29 1 -0.3634 -0.0003 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5136 32 1 1.9669 2.1206 0.0004 33 1 5.5772 1.1337 0.7440 34 1 6.2602 2.0516 -1.3530 35 1 3.4172 3.7957 -0.5192 36 1 3.7952 3.2865 1.8296 37 1 5.1035 -1.8253 1.0371 38 1 4.5771 -2.5346 -0.5082 39 1 5.6449 -1.1105 -0.5005 40 1 0.9613 -2.2921 -1.9437 41 1 -0.2527 -6.6405 -1.4923 42 1 -2.0829 -6.0232 -3.5528 43 1 -0.5493 -6.5326 -4.2989 44 1 -2.9344 -9.1976 -1.8651 45 1 -3.1405 -7.3941 -1.7871 46 1 -4.7715 -9.6132 -4.9316 47 1 -4.4305 -10.1672 -3.2748 48 1 -6.6533 -9.3191 -3.4903 49 1 -1.9471 -8.3062 -5.3093 50 1 -2.0935 -9.8403 -4.3468 51 1 0.6562 -6.0986 0.0066 52 1 1.8900 -5.2035 1.9355 53 1 2.6637 -2.8698 1.9335 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_12335854.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:13 Heat of formation + Delta-G solvation = -60.603392 kcal Electronic energy + Delta-G solvation = -35867.051485 eV Core-core repulsion = 31007.377737 eV Total energy + Delta-G solvation = -4859.673748 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.184 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -48.80675 -43.04155 -41.44455 -40.20595 -39.44916 -37.65088 -37.28047 -35.86875 -34.51232 -33.86719 -32.54806 -30.88813 -30.27840 -29.87888 -27.46168 -27.27819 -27.03828 -25.05214 -24.61667 -23.73804 -22.88726 -22.03710 -21.19017 -20.58942 -19.96842 -18.85820 -18.29590 -18.28741 -17.95616 -17.60832 -17.43529 -17.18438 -16.78086 -16.63209 -16.33639 -16.10533 -15.81832 -15.71652 -15.46948 -15.28470 -15.18122 -14.95480 -14.89528 -14.77765 -14.49272 -14.32525 -14.24706 -13.94801 -13.87143 -13.74719 -13.63719 -13.41762 -13.31618 -13.22198 -13.02690 -12.83542 -12.73925 -12.55544 -12.41907 -12.39792 -12.17049 -11.95473 -11.62072 -11.41230 -11.31734 -10.85936 -10.62535 -10.48515 -10.24756 -10.16071 -9.67868 -9.00056 -4.94872 -0.54177 -0.15161 0.92891 1.37791 1.50102 1.53163 1.56527 1.72789 1.81510 2.09583 2.47536 2.95938 3.03408 3.18775 3.20026 3.37767 3.44670 3.53779 3.58933 3.70181 3.80386 3.83426 3.87463 3.87900 4.04617 4.10102 4.14218 4.21204 4.26347 4.30055 4.33304 4.37063 4.43387 4.48104 4.48674 4.53944 4.56237 4.61581 4.63183 4.64333 4.65039 4.69045 4.82495 4.86475 4.88563 4.93565 4.95890 4.96192 5.04875 5.06197 5.10200 5.16915 5.29228 5.44756 5.77502 5.96132 6.17688 6.32433 6.85727 6.86646 7.01541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.017 3.983 3 C -0.217 4.217 4 C -0.180 4.180 5 C -0.039 4.039 6 O -0.568 6.568 7 Si 0.786 3.214 8 C 0.046 3.954 9 C -0.081 4.081 10 N -0.404 5.404 11 C 0.095 3.905 12 C -0.064 4.064 13 C -0.132 4.132 14 C 0.560 3.440 15 O -0.575 6.575 16 N -0.708 5.708 17 C 0.118 3.882 18 C 0.081 3.919 19 F -0.203 7.203 20 C -0.142 4.142 21 C -0.112 4.112 22 H 0.097 0.903 23 C 0.084 3.916 24 O -0.598 6.598 25 C -0.135 4.135 26 C -0.064 4.064 27 C -0.096 4.096 28 C -0.079 4.079 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.399 0.601 35 H -0.308 1.308 36 H -0.297 1.297 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.416 0.584 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.397 0.603 49 H 0.095 0.905 50 H 0.113 0.887 51 H 0.165 0.835 52 H 0.179 0.821 53 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.313 -7.258 4.455 8.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 C -0.241 4.241 4 C -0.186 4.186 5 C -0.149 4.149 6 O -0.377 6.377 7 Si 0.694 3.306 8 C -0.064 4.064 9 C -0.138 4.138 10 N -0.079 5.079 11 C 0.006 3.994 12 C -0.084 4.084 13 C -0.136 4.136 14 C 0.349 3.651 15 O -0.455 6.455 16 N -0.361 5.361 17 C -0.006 4.006 18 C 0.062 3.938 19 F -0.184 7.184 20 C -0.179 4.179 21 C -0.130 4.130 22 H 0.115 0.885 23 C 0.007 3.993 24 O -0.406 6.406 25 C -0.173 4.173 26 C -0.082 4.082 27 C -0.114 4.114 28 C -0.098 4.098 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.148 0.852 33 H 0.105 0.895 34 H 0.249 0.751 35 H -0.237 1.237 36 H -0.225 1.225 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.132 0.868 41 H 0.255 0.745 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.100 0.900 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.247 0.753 49 H 0.114 0.886 50 H 0.132 0.868 51 H 0.183 0.817 52 H 0.197 0.803 53 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.314 -6.463 3.963 7.588 hybrid contribution -0.711 -0.760 -0.172 1.055 sum -0.397 -7.223 3.791 8.167 Atomic orbital electron populations 1.20367 0.86555 1.04020 1.03019 1.20700 0.94512 0.85008 1.08911 1.20663 0.93234 0.97487 1.12759 1.18995 0.93972 0.92657 1.13018 1.24090 0.93916 1.08417 0.88510 1.86485 1.47022 1.74251 1.29978 0.94969 0.84617 0.76091 0.74948 1.20732 0.84695 0.94149 1.06804 1.20409 0.92525 0.97056 1.03820 1.41501 1.05642 1.03311 1.57434 1.17674 1.02264 0.83452 0.96028 1.21087 0.95779 0.95001 0.96559 1.19655 1.03517 0.94338 0.96095 1.18389 0.78490 0.81813 0.86444 1.90804 1.58397 1.59219 1.37107 1.45585 1.57014 1.11705 1.21828 1.21696 0.98057 0.91356 0.89484 1.22576 0.83908 0.89622 0.97677 1.92847 1.60006 1.78421 1.87084 1.23731 0.92085 1.04641 0.97458 1.22378 0.93367 1.00659 0.96597 0.88478 1.22193 0.83532 0.94514 0.99103 1.86436 1.19800 1.45356 1.89044 1.23607 0.93156 1.02860 0.97636 1.21791 0.94926 1.00393 0.91116 1.21465 0.96203 0.94263 0.99497 1.21678 0.97784 0.94346 0.95994 0.91030 0.91157 0.88922 0.85243 0.89480 0.75073 1.23665 1.22503 0.88928 0.91829 0.89201 0.86776 0.74491 0.89012 0.90258 0.87560 0.90029 0.92203 0.92109 0.75255 0.88645 0.86820 0.81720 0.80326 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 9.93 71.23 0.71 0.22 16 2 C 0.02 0.19 6.81 41.04 0.28 0.47 16 3 C -0.22 -2.81 9.27 22.15 0.21 -2.61 16 4 C -0.18 -1.98 5.39 -19.98 -0.11 -2.09 16 5 C -0.04 -0.17 2.49 71.24 0.18 0.00 16 6 O -0.57 -2.55 12.86 -148.98 -1.92 -4.47 16 7 Si 0.79 2.42 30.84 68.60 2.12 4.54 16 8 C 0.05 0.42 6.81 41.05 0.28 0.70 16 9 C -0.08 -0.21 9.72 71.24 0.69 0.48 16 10 N -0.40 -3.72 2.79 -320.37 -0.89 -4.61 16 11 C 0.09 0.50 4.66 38.04 0.18 0.67 16 12 C -0.06 -0.47 9.27 22.65 0.21 -0.26 16 13 C -0.13 -0.42 5.87 -20.10 -0.12 -0.53 16 14 C 0.56 3.67 7.77 86.79 0.67 4.34 16 15 O -0.57 -8.91 16.35 -3.86 -0.06 -8.98 16 16 N -0.71 -0.05 5.40 -465.96 -2.52 -2.57 16 17 C 0.12 -0.03 5.26 86.38 0.45 0.42 16 18 C 0.08 -0.26 1.91 -10.27 -0.02 -0.28 16 19 F -0.20 0.04 16.61 44.97 0.75 0.79 16 20 C -0.14 0.60 7.06 31.12 0.22 0.82 16 21 C -0.11 0.44 3.66 -10.27 -0.04 0.40 16 22 H 0.10 -0.18 7.72 -2.39 -0.02 -0.20 16 23 C 0.08 -0.38 6.88 71.98 0.50 0.11 16 24 O -0.60 0.50 13.66 -148.98 -2.03 -1.54 16 25 C -0.13 0.74 7.12 31.12 0.22 0.97 16 26 C -0.06 0.30 9.54 22.54 0.21 0.51 16 27 C -0.10 0.60 10.02 22.21 0.22 0.83 16 28 C -0.08 0.10 9.72 22.44 0.22 0.32 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.32 7.84 -2.39 -0.02 0.30 16 31 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.13 1.66 6.55 -2.91 -0.02 1.64 16 33 H 0.09 -0.04 7.96 -2.39 -0.02 -0.06 16 34 H 0.40 -2.70 8.74 -74.05 -0.65 -3.35 16 35 H -0.31 -3.60 7.06 99.48 0.70 -2.89 16 36 H -0.30 -2.68 7.11 99.48 0.71 -1.98 16 37 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.06 0.17 7.83 -2.39 -0.02 0.15 16 39 H 0.09 0.23 7.87 -2.39 -0.02 0.21 16 40 H 0.11 1.44 7.65 -2.91 -0.02 1.42 16 41 H 0.42 -2.14 6.06 -92.71 -0.56 -2.71 16 42 H 0.09 0.04 7.39 -2.39 -0.02 0.02 16 43 H 0.08 0.12 8.14 -2.38 -0.02 0.10 16 44 H 0.11 -0.57 7.90 -2.39 -0.02 -0.59 16 45 H 0.08 -0.27 8.10 -2.39 -0.02 -0.29 16 46 H 0.06 -0.38 8.14 -2.39 -0.02 -0.40 16 47 H 0.06 -0.42 7.84 -2.39 -0.02 -0.44 16 48 H 0.40 -3.56 9.12 -74.05 -0.68 -4.23 16 49 H 0.09 -0.61 8.10 -2.39 -0.02 -0.63 16 50 H 0.11 -0.82 8.10 -2.39 -0.02 -0.84 16 51 H 0.17 -1.84 6.40 -2.91 -0.02 -1.86 16 52 H 0.18 -2.35 8.06 -2.91 -0.02 -2.37 16 53 H 0.15 -0.53 8.06 -2.91 -0.02 -0.55 16 Total: 0.00 -30.08 439.81 -0.28 -30.36 By element: Atomic # 1 Polarization: -18.13 SS G_CDS: -0.89 Total: -19.02 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 5.17 Total: 5.49 kcal Atomic # 7 Polarization: -3.77 SS G_CDS: -3.41 Total: -7.18 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -4.01 Total: -14.98 kcal Atomic # 9 Polarization: 0.04 SS G_CDS: 0.75 Total: 0.79 kcal Atomic # 14 Polarization: 2.42 SS G_CDS: 2.12 Total: 4.54 kcal Total: -30.08 -0.28 -30.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_12335854.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.246 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds