Wall clock time and date at job start Sun Mar 7 2021 09:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34801 * 125.90652 * 2 1 4 4 C 1.40994 * 107.48583 * 179.84887 * 3 2 1 5 5 C 1.50701 * 126.25395 * 180.17922 * 4 3 2 6 6 O 1.42900 * 109.47452 * 255.27713 * 5 4 3 7 7 Si 1.86303 * 109.47173 * 15.27822 * 5 4 3 8 8 C 1.34807 * 107.48410 * 0.41568 * 4 3 2 9 9 C 1.50701 * 125.89764 * 179.74255 * 8 4 3 10 10 N 1.36650 * 108.19338 * 359.74927 * 8 4 3 11 11 C 1.39671 * 125.67411 * 179.97438 * 10 8 4 12 12 C 1.40197 * 120.15488 * 90.00019 * 11 10 8 13 13 C 1.47577 * 120.19473 * 359.97438 * 12 11 10 14 14 O 1.21591 * 119.99882 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00153 * 179.97438 * 13 12 11 16 16 C 1.46506 * 119.99844 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.46833 * 180.02562 * 16 15 13 18 18 F 1.39907 * 112.84905 * 48.80765 * 17 16 15 19 19 C 1.53778 * 113.61385 * 180.02562 * 17 16 15 20 20 C 1.53781 * 87.08254 * 139.98282 * 19 17 16 21 21 H 1.08998 * 113.61874 * 220.02156 * 20 19 17 22 22 C 1.53005 * 113.61391 * 89.20121 * 20 19 17 23 23 O 1.42905 * 109.46937 * 175.00327 * 22 20 19 24 24 C 1.53780 * 87.08068 * 334.56735 * 20 19 17 25 25 C 1.39657 * 119.61734 * 179.97438 * 12 11 10 26 26 C 1.37836 * 119.91442 * 359.97438 * 25 12 11 27 27 C 1.38530 * 120.30829 * 359.97438 * 26 25 12 28 28 C 1.38063 * 120.39415 * 359.78693 * 27 26 25 29 29 H 1.08999 * 109.47015 * 269.69350 * 1 2 3 30 30 H 1.09000 * 109.46646 * 29.68503 * 1 2 3 31 31 H 1.09000 * 109.47248 * 149.69220 * 1 2 3 32 32 H 1.08002 * 126.25614 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.46652 * 135.27965 * 5 4 3 34 34 H 0.96700 * 113.99965 * 180.02562 * 6 5 4 35 35 H 1.48499 * 109.99946 * 299.99747 * 7 5 4 36 36 H 1.48499 * 109.99955 * 61.32020 * 7 5 4 37 37 H 1.08992 * 109.47201 * 270.00004 * 9 8 4 38 38 H 1.08999 * 109.47017 * 30.00821 * 9 8 4 39 39 H 1.09001 * 109.46690 * 149.99867 * 9 8 4 40 40 H 0.96992 * 119.99917 * 0.02562 * 15 13 12 41 41 H 1.08993 * 109.47317 * 300.00602 * 16 15 13 42 42 H 1.09000 * 109.46659 * 60.00456 * 16 15 13 43 43 H 1.09000 * 113.62149 * 254.53126 * 19 17 16 44 44 H 1.09000 * 113.61579 * 25.43900 * 19 17 16 45 45 H 1.08996 * 109.46799 * 295.00327 * 22 20 19 46 46 H 1.08999 * 109.46701 * 54.99983 * 22 20 19 47 47 H 0.96701 * 113.99370 * 180.02562 * 23 22 20 48 48 H 1.08996 * 113.62095 * 270.88029 * 24 20 19 49 49 H 1.09007 * 113.61276 * 139.97571 * 24 20 19 50 50 H 1.07995 * 120.04567 * 180.02562 * 25 12 11 51 51 H 1.07996 * 119.84337 * 179.97438 * 26 25 12 52 52 H 1.08003 * 119.80144 * 180.02562 * 27 26 25 53 53 H 1.07999 * 119.96399 * 180.23389 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2976 1.0919 0.0000 4 6 3.6353 0.6463 0.0035 5 6 4.8648 1.5177 0.0086 6 8 5.4556 1.5157 -1.2925 7 14 4.3903 3.2586 0.4725 8 6 3.6133 -0.7015 -0.0037 9 6 4.8195 -1.6050 -0.0087 10 7 2.3083 -1.1069 -0.0060 11 6 1.8671 -2.4321 -0.0137 12 6 1.6447 -3.1074 1.1946 13 6 1.8760 -2.4223 2.4812 14 8 2.2601 -1.2688 2.4953 15 7 1.6604 -3.0750 3.6405 16 6 1.8906 -2.3951 4.9176 17 6 1.5741 -3.3518 6.0689 18 9 2.1784 -4.6043 5.9162 19 6 1.7839 -2.7317 7.4604 20 6 0.5007 -3.4609 7.8923 21 1 -0.1405 -2.8675 8.5441 22 6 0.7486 -4.8726 8.4279 23 8 -0.4797 -5.4220 8.9091 24 6 0.0774 -3.4263 6.4143 25 6 1.2030 -4.4321 1.1738 26 6 0.9883 -5.0662 -0.0310 27 6 1.2081 -4.3955 -1.2230 28 6 1.6400 -3.0842 -1.2173 29 1 -0.3633 -0.0055 1.0276 30 1 -0.3632 0.8928 -0.5089 31 1 -0.3634 -0.8872 -0.5186 32 1 1.9668 2.1200 0.0004 33 1 5.5812 1.1309 0.7335 34 1 6.2537 2.0571 -1.3630 35 1 3.4139 3.7972 -0.5082 36 1 3.8040 3.2788 1.8366 37 1 5.1102 -1.8172 -1.0375 38 1 5.6438 -1.1133 0.5079 39 1 4.5767 -2.5378 0.5001 40 1 1.3537 -3.9951 3.6292 41 1 2.9331 -2.0835 4.9807 42 1 1.2450 -1.5194 4.9845 43 1 2.6806 -3.0888 7.9670 44 1 1.6939 -1.6455 7.4725 45 1 1.1392 -5.5013 7.6278 46 1 1.4716 -4.8302 9.2425 47 1 -0.3973 -6.3175 9.2647 48 1 -0.4791 -2.5300 6.1403 49 1 -0.4035 -4.3442 6.0762 50 1 1.0291 -4.9587 2.1005 51 1 0.6471 -6.0908 -0.0457 52 1 1.0368 -4.9002 -2.1624 53 1 1.8056 -2.5667 -2.1507 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_12335856.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:17 Heat of formation + Delta-G solvation = -46.951506 kcal Electronic energy + Delta-G solvation = -37764.316111 eV Core-core repulsion = 32905.234354 eV Total energy + Delta-G solvation = -4859.081758 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.184 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -49.00843 -42.99008 -41.11399 -39.98562 -39.38507 -37.63386 -37.24840 -35.84539 -34.33297 -33.73643 -32.77769 -30.64044 -30.25927 -30.06368 -27.43957 -27.15784 -26.91465 -24.99814 -24.68730 -23.57221 -22.90081 -21.88542 -21.15499 -20.28257 -20.06950 -19.18781 -18.45085 -18.28430 -17.91954 -17.67441 -17.14499 -17.02380 -16.70960 -16.38060 -16.18514 -16.02596 -15.85096 -15.62612 -15.42925 -15.29323 -15.20569 -15.10241 -14.88403 -14.51845 -14.39762 -14.32435 -14.22478 -13.88794 -13.82283 -13.68384 -13.55283 -13.47521 -13.27736 -13.24439 -13.20774 -13.01083 -12.68191 -12.52138 -12.46924 -12.38991 -11.95197 -11.85495 -11.64976 -11.37734 -11.14456 -10.83918 -10.46631 -10.25303 -10.17723 -10.09523 -9.70229 -8.82818 -4.97719 -0.50828 -0.03537 1.08147 1.38075 1.61583 1.65222 1.75659 1.78823 1.84686 2.09506 2.52123 2.93906 3.03468 3.09457 3.18230 3.41415 3.46725 3.54361 3.64761 3.75574 3.83559 3.89545 3.94076 4.12119 4.12590 4.15384 4.16135 4.17027 4.27118 4.30339 4.35232 4.37655 4.46020 4.49974 4.50306 4.51023 4.55801 4.58914 4.62656 4.63551 4.64401 4.79995 4.82533 4.85834 4.87606 4.97614 4.99005 5.07177 5.11399 5.13105 5.21628 5.23332 5.27399 5.56296 5.92878 6.09800 6.23277 6.50458 6.80530 6.96762 7.02218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.037 3.963 3 C -0.225 4.225 4 C -0.181 4.181 5 C -0.038 4.038 6 O -0.564 6.564 7 Si 0.790 3.210 8 C 0.059 3.941 9 C -0.071 4.071 10 N -0.390 5.390 11 C 0.142 3.858 12 C -0.144 4.144 13 C 0.547 3.453 14 O -0.546 6.546 15 N -0.713 5.713 16 C 0.118 3.882 17 C 0.083 3.917 18 F -0.192 7.192 19 C -0.135 4.135 20 C -0.115 4.115 21 H 0.092 0.908 22 C 0.083 3.917 23 O -0.593 6.593 24 C -0.141 4.141 25 C -0.074 4.074 26 C -0.103 4.103 27 C -0.073 4.073 28 C -0.122 4.122 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.397 0.603 35 H -0.301 1.301 36 H -0.308 1.308 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.412 0.588 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.122 0.878 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.398 0.602 48 H 0.111 0.889 49 H 0.082 0.918 50 H 0.158 0.842 51 H 0.172 0.828 52 H 0.167 0.833 53 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.371 -6.518 1.498 6.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.072 4.072 3 C -0.249 4.249 4 C -0.187 4.187 5 C -0.148 4.148 6 O -0.373 6.373 7 Si 0.698 3.302 8 C -0.051 4.051 9 C -0.128 4.128 10 N -0.064 5.064 11 C 0.052 3.948 12 C -0.148 4.148 13 C 0.334 3.666 14 O -0.424 6.424 15 N -0.366 5.366 16 C -0.006 4.006 17 C 0.064 3.936 18 F -0.172 7.172 19 C -0.173 4.173 20 C -0.134 4.134 21 H 0.111 0.889 22 C 0.006 3.994 23 O -0.402 6.402 24 C -0.179 4.179 25 C -0.093 4.093 26 C -0.121 4.121 27 C -0.091 4.091 28 C -0.141 4.141 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.091 0.909 34 H 0.247 0.753 35 H -0.229 1.229 36 H -0.236 1.236 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.249 0.751 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.140 0.860 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.248 0.752 48 H 0.129 0.871 49 H 0.101 0.899 50 H 0.175 0.825 51 H 0.190 0.810 52 H 0.185 0.815 53 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.791 -5.327 1.443 5.575 hybrid contribution -0.136 -1.209 0.382 1.275 sum -0.927 -6.536 1.825 6.849 Atomic orbital electron populations 1.20291 0.86873 1.03793 1.02466 1.20436 0.94062 0.84875 1.07820 1.20469 0.93315 0.97094 1.14008 1.18806 0.93694 0.92564 1.13611 1.24064 0.93945 1.08543 0.88241 1.86475 1.47035 1.74326 1.29471 0.95237 0.84414 0.75935 0.74605 1.20346 0.84569 0.93790 1.06403 1.20226 0.92939 0.96823 1.02849 1.41008 1.05243 1.03013 1.57133 1.17819 1.00199 0.83193 0.93563 1.20171 1.06436 0.96439 0.91752 1.18407 0.77727 0.86036 0.84422 1.90922 1.45904 1.17837 1.87754 1.45637 1.68850 1.17410 1.04749 1.21782 1.02672 0.95246 0.80910 1.22205 0.95336 0.80094 0.95976 1.92830 1.84852 1.43008 1.96548 1.23587 0.98878 1.02523 0.92311 1.22286 0.98188 0.96105 0.96797 0.88926 1.22111 0.85933 0.93342 0.98015 1.86409 1.33383 1.36848 1.83555 1.23652 0.93592 1.04867 0.95790 1.21603 0.95512 0.91311 1.00899 1.21708 0.97458 1.02012 0.90883 1.21704 0.94267 0.92343 1.00788 1.21468 0.99930 0.96397 0.96263 0.91589 0.89324 0.91025 0.86056 0.90888 0.75289 1.22881 1.23625 0.90263 0.89736 0.92604 0.75067 0.91195 0.89218 0.88999 0.85951 0.92557 0.92437 0.75220 0.87094 0.89938 0.82485 0.81017 0.81545 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.09 71.24 0.72 0.13 16 2 C 0.04 0.52 6.01 41.02 0.25 0.77 16 3 C -0.22 -3.83 9.27 22.16 0.21 -3.63 16 4 C -0.18 -2.81 5.39 -19.98 -0.11 -2.91 16 5 C -0.04 -0.33 2.59 71.24 0.18 -0.15 16 6 O -0.56 -3.85 12.86 -148.98 -1.92 -5.77 16 7 Si 0.79 5.30 30.85 68.60 2.12 7.41 16 8 C 0.06 0.81 6.00 41.02 0.25 1.06 16 9 C -0.07 -0.58 9.87 71.24 0.70 0.12 16 10 N -0.39 -4.75 1.44 -319.54 -0.46 -5.21 16 11 C 0.14 0.93 4.52 38.49 0.17 1.11 16 12 C -0.14 -0.55 5.89 -19.99 -0.12 -0.66 16 13 C 0.55 4.00 7.77 86.71 0.67 4.67 16 14 O -0.55 -8.54 13.69 -4.00 -0.05 -8.59 16 15 N -0.71 -0.64 5.42 -466.22 -2.53 -3.16 16 16 C 0.12 0.03 5.36 86.38 0.46 0.49 16 17 C 0.08 -0.22 1.66 -10.27 -0.02 -0.24 16 18 F -0.19 -0.05 15.02 44.97 0.68 0.63 16 19 C -0.14 0.60 7.13 31.12 0.22 0.83 16 20 C -0.12 0.28 4.19 -10.27 -0.04 0.23 16 21 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 22 C 0.08 -0.14 6.66 71.98 0.48 0.34 16 23 O -0.59 -0.34 13.66 -148.98 -2.04 -2.38 16 24 C -0.14 0.47 7.07 31.12 0.22 0.69 16 25 C -0.07 0.30 9.54 22.52 0.21 0.51 16 26 C -0.10 0.74 10.02 22.24 0.22 0.96 16 27 C -0.07 0.38 10.03 22.30 0.22 0.60 16 28 C -0.12 -0.17 9.96 22.35 0.22 0.05 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.36 7.83 -2.39 -0.02 0.35 16 32 H 0.12 2.06 6.56 -2.91 -0.02 2.05 16 33 H 0.07 0.41 7.50 -2.39 -0.02 0.40 16 34 H 0.40 -1.83 8.74 -74.06 -0.65 -2.47 16 35 H -0.30 -4.14 7.05 99.48 0.70 -3.44 16 36 H -0.31 -4.41 7.11 99.48 0.71 -3.70 16 37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.08 0.56 7.50 -2.39 -0.02 0.54 16 39 H 0.05 0.43 7.83 -2.39 -0.02 0.41 16 40 H 0.41 -1.56 6.22 -92.71 -0.58 -2.14 16 41 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.09 0.05 7.95 -2.39 -0.02 0.03 16 43 H 0.09 -0.44 8.10 -2.39 -0.02 -0.46 16 44 H 0.12 -0.84 8.10 -2.39 -0.02 -0.86 16 45 H 0.06 -0.09 6.32 -2.39 -0.02 -0.10 16 46 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 47 H 0.40 -3.03 9.12 -74.06 -0.68 -3.70 16 48 H 0.11 -0.52 7.96 -2.39 -0.02 -0.54 16 49 H 0.08 -0.20 8.10 -2.38 -0.02 -0.22 16 50 H 0.16 -1.49 6.40 -2.91 -0.02 -1.50 16 51 H 0.17 -2.32 8.06 -2.91 -0.02 -2.35 16 52 H 0.17 -1.79 8.06 -2.91 -0.02 -1.81 16 53 H 0.13 0.22 8.06 -2.91 -0.02 0.20 16 Total: 0.00 -30.16 433.36 0.03 -30.13 By element: Atomic # 1 Polarization: -17.14 SS G_CDS: -0.90 Total: -18.04 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 5.14 Total: 4.98 kcal Atomic # 7 Polarization: -5.39 SS G_CDS: -2.99 Total: -8.38 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -4.01 Total: -16.74 kcal Atomic # 9 Polarization: -0.05 SS G_CDS: 0.68 Total: 0.63 kcal Atomic # 14 Polarization: 5.30 SS G_CDS: 2.12 Total: 7.41 kcal Total: -30.16 0.03 -30.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_12335856.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.825 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds