Wall clock time and date at job start Sun Mar 7 2021 09:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86294 * 109.47144 * 2 1 4 4 C 1.50694 * 109.47290 * 239.99805 * 2 1 3 5 5 C 1.38316 * 119.92287 * 119.97670 * 4 2 1 6 6 C 1.38471 * 120.28211 * 180.02562 * 5 4 2 7 7 Br 1.89105 * 119.93619 * 180.02562 * 6 5 4 8 8 C 1.38027 * 120.12377 * 359.74547 * 6 5 4 9 9 C 1.39578 * 119.84539 * 0.53112 * 8 6 5 10 10 C 1.47845 * 120.14319 * 179.74661 * 9 8 6 11 11 O 1.21551 * 120.00087 * 179.72694 * 10 9 8 12 12 N 1.34777 * 119.99799 * 359.72286 * 10 9 8 13 13 C 1.46498 * 120.00084 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47472 * 179.97438 * 13 12 10 15 15 F 1.39895 * 112.90625 * 316.25073 * 14 13 12 16 16 C 1.53782 * 113.61379 * 87.49745 * 14 13 12 17 17 C 1.53962 * 87.11063 * 89.18901 * 16 14 13 18 18 H 1.08993 * 113.61598 * 270.84305 * 17 16 14 19 19 C 1.52999 * 113.66529 * 139.88900 * 17 16 14 20 20 O 1.42904 * 109.47219 * 87.55249 * 19 17 16 21 21 C 1.53781 * 113.61652 * 184.99725 * 14 13 12 22 22 C 1.37990 * 119.92258 * 299.99973 * 4 2 1 23 23 H 0.96700 * 113.99548 * 60.00192 * 1 2 3 24 24 H 1.09004 * 109.46821 * 120.00078 * 2 1 3 25 25 H 1.48504 * 110.00171 * 60.00085 * 3 2 1 26 26 H 1.48502 * 109.99936 * 181.31910 * 3 2 1 27 27 H 1.08000 * 119.86110 * 359.97438 * 5 4 2 28 28 H 1.08011 * 120.07516 * 180.25199 * 8 6 5 29 29 H 0.96993 * 120.00140 * 359.97438 * 12 10 9 30 30 H 1.09001 * 109.47367 * 59.99555 * 13 12 10 31 31 H 1.09007 * 109.47028 * 299.99629 * 13 12 10 32 32 H 1.08997 * 113.61668 * 203.66451 * 16 14 13 33 33 H 1.08994 * 113.61387 * 334.57186 * 16 14 13 34 34 H 1.09002 * 109.47053 * 207.55709 * 19 17 16 35 35 H 1.09004 * 109.47121 * 327.55345 * 19 17 16 36 36 H 0.96699 * 113.99884 * 179.97438 * 20 19 17 37 37 H 1.09002 * 113.61445 * 25.43321 * 21 14 13 38 38 H 1.09002 * 113.61408 * 156.25051 * 21 14 13 39 39 H 1.08000 * 120.05976 * 0.02765 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7261 -0.0366 -2.1400 6 6 3.1913 -0.6819 -3.2734 7 35 4.2778 0.2485 -4.5102 8 6 2.8683 -2.0048 -3.4990 9 6 2.0619 -2.6882 -2.5875 10 6 1.7073 -4.1036 -2.8256 11 8 1.0089 -4.6976 -2.0275 12 7 2.1582 -4.7351 -3.9275 13 6 1.8063 -6.1374 -4.1638 14 6 2.4406 -6.6087 -5.4738 15 9 2.3122 -5.6751 -6.5078 16 6 3.8704 -7.1496 -5.3064 17 6 3.2355 -8.5300 -5.0576 18 1 3.0014 -8.7205 -4.0103 19 6 3.9946 -9.6830 -5.7174 20 8 5.0166 -10.1482 -4.8335 21 6 2.0324 -8.0353 -5.8777 22 6 1.5971 -2.0315 -1.4471 23 1 -0.3932 0.4417 -0.7651 24 1 1.7923 -0.5139 0.8900 25 1 1.5615 2.4679 1.2085 26 1 3.5346 1.7702 -0.0321 27 1 2.9842 0.9976 -1.9661 28 1 3.2350 -2.5086 -4.3813 29 1 2.7151 -4.2609 -4.5645 30 1 0.7226 -6.2340 -4.2298 31 1 2.1760 -6.7485 -3.3402 32 1 4.4649 -7.1020 -6.2187 33 1 4.3915 -6.7449 -4.4388 34 1 3.3026 -10.4971 -5.9333 35 1 4.4477 -9.3355 -6.6459 36 1 5.5390 -10.8809 -5.1873 37 1 1.0697 -8.3455 -5.4713 38 1 2.1230 -8.2293 -6.9465 39 1 0.9758 -2.5560 -0.7362 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_12335870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:27 Heat of formation + Delta-G solvation = -107.454631 kcal Electronic energy + Delta-G solvation = -25420.158753 eV Core-core repulsion = 21290.890188 eV Total energy + Delta-G solvation = -4129.268565 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.036 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.78735 -41.65534 -40.37172 -39.77871 -37.69966 -37.26359 -35.80371 -33.64004 -33.23581 -30.49196 -30.08844 -27.53186 -27.05143 -26.95228 -24.83461 -22.92762 -22.78460 -21.59575 -20.36663 -19.21590 -18.28258 -18.18071 -17.76209 -17.52923 -17.17045 -16.73243 -16.69815 -16.37559 -16.16272 -15.97202 -15.70724 -15.52622 -15.00095 -14.93369 -14.80504 -14.55058 -14.31969 -14.09365 -13.84645 -13.40721 -13.30740 -13.05751 -12.82549 -12.38054 -12.21217 -12.15090 -11.98404 -11.97133 -11.63614 -11.47659 -11.37250 -11.26133 -10.84542 -10.62985 -10.47359 -10.19766 -9.94441 -5.05304 -0.56792 -0.19866 0.40229 1.20654 1.44443 1.58870 1.76426 1.93518 2.41013 2.97771 3.05486 3.19625 3.21363 3.25079 3.34704 3.45307 3.52498 3.76329 3.83601 3.88943 3.93155 4.17058 4.22186 4.26929 4.32935 4.35824 4.45413 4.50509 4.58133 4.64610 4.66606 4.70679 4.72438 4.88667 4.88752 4.95861 5.03806 5.12275 5.31135 5.34077 6.17843 6.70767 6.87001 6.87777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.074 4.074 3 Si 0.772 3.228 4 C -0.115 4.115 5 C -0.059 4.059 6 C -0.098 4.098 7 Br -0.028 7.028 8 C -0.046 4.046 9 C -0.136 4.136 10 C 0.563 3.437 11 O -0.567 6.567 12 N -0.713 5.713 13 C 0.119 3.881 14 C 0.079 3.921 15 F -0.204 7.204 16 C -0.144 4.144 17 C -0.110 4.110 18 H 0.099 0.901 19 C 0.084 3.916 20 O -0.598 6.598 21 C -0.133 4.133 22 C -0.027 4.027 23 H 0.397 0.603 24 H 0.114 0.886 25 H -0.293 1.293 26 H -0.276 1.276 27 H 0.158 0.842 28 H 0.156 0.844 29 H 0.414 0.586 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 -0.097 -5.624 5.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.184 4.184 3 Si 0.677 3.323 4 C -0.116 4.116 5 C -0.079 4.079 6 C -0.178 4.178 7 Br 0.058 6.942 8 C -0.066 4.066 9 C -0.140 4.140 10 C 0.351 3.649 11 O -0.447 6.447 12 N -0.365 5.365 13 C -0.005 4.005 14 C 0.061 3.939 15 F -0.185 7.185 16 C -0.181 4.181 17 C -0.128 4.128 18 H 0.117 0.883 19 C 0.006 3.994 20 O -0.406 6.406 21 C -0.171 4.171 22 C -0.046 4.046 23 H 0.247 0.753 24 H 0.132 0.868 25 H -0.221 1.221 26 H -0.203 1.203 27 H 0.175 0.825 28 H 0.174 0.826 29 H 0.252 0.748 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.247 0.753 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.010 0.572 -4.253 4.739 hybrid contribution 0.255 -1.110 -0.133 1.147 sum 2.265 -0.538 -4.387 4.966 Atomic orbital electron populations 1.86512 1.16823 1.82149 1.50542 1.25256 0.85626 1.11056 0.96473 0.93814 0.78315 0.74727 0.85483 1.20359 0.99219 0.94285 0.97778 1.21399 0.94476 1.00501 0.91476 1.21732 1.02996 0.95685 0.97375 1.96861 1.65583 1.75191 1.56551 1.21429 0.94181 0.92600 0.98437 1.19809 1.02895 0.93495 0.97842 1.18307 0.79193 0.86477 0.80966 1.90808 1.39201 1.68058 1.46636 1.45659 1.53525 1.13053 1.24289 1.21709 1.01141 0.81991 0.95683 1.22601 0.99371 0.87432 0.84542 1.92846 1.96942 1.68447 1.60224 1.23770 0.94582 0.95620 1.04166 1.22399 0.95845 0.93643 1.00950 0.88322 1.22197 0.89560 0.95769 0.91840 1.86437 1.50343 1.56745 1.47104 1.23596 0.99622 0.91136 1.02779 1.21257 0.94768 0.93581 0.95010 0.75266 0.86839 1.22062 1.20259 0.82462 0.82648 0.74850 0.89905 0.88853 0.87778 0.90145 0.92107 0.92250 0.75269 0.88440 0.86940 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.09 12.76 -148.98 -1.90 -1.81 16 2 C -0.07 0.10 2.82 71.23 0.20 0.31 16 3 Si 0.77 -2.76 29.78 68.60 2.04 -0.72 16 4 C -0.12 0.08 5.38 -19.91 -0.11 -0.03 16 5 C -0.06 0.15 8.41 22.34 0.19 0.33 16 6 C -0.10 0.15 6.22 22.28 0.14 0.29 16 7 Br -0.03 0.05 33.69 -20.37 -0.69 -0.64 16 8 C -0.05 0.07 9.28 22.54 0.21 0.28 16 9 C -0.14 -0.33 5.87 -20.09 -0.12 -0.45 16 10 C 0.56 3.20 7.77 86.79 0.67 3.88 16 11 O -0.57 -7.60 16.35 -3.88 -0.06 -7.66 16 12 N -0.71 -0.32 5.40 -465.98 -2.52 -2.84 16 13 C 0.12 -0.05 5.27 86.38 0.45 0.40 16 14 C 0.08 -0.22 1.91 -10.27 -0.02 -0.24 16 15 F -0.20 -0.13 16.61 44.97 0.75 0.61 16 16 C -0.14 0.51 7.07 31.18 0.22 0.73 16 17 C -0.11 0.42 3.67 -10.20 -0.04 0.38 16 18 H 0.10 -0.20 7.73 -2.39 -0.02 -0.22 16 19 C 0.08 -0.36 6.89 71.98 0.50 0.13 16 20 O -0.60 0.39 13.66 -148.98 -2.04 -1.65 16 21 C -0.13 0.73 7.12 31.12 0.22 0.96 16 22 C -0.03 -0.08 9.15 22.53 0.21 0.12 16 23 H 0.40 -3.37 8.70 -74.06 -0.64 -4.02 16 24 H 0.11 -0.03 7.96 -2.38 -0.02 -0.05 16 25 H -0.29 -1.17 7.11 99.48 0.71 -0.46 16 26 H -0.28 -0.09 7.11 99.48 0.71 0.62 16 27 H 0.16 -0.95 4.86 -2.91 -0.01 -0.97 16 28 H 0.16 -0.88 6.41 -2.91 -0.02 -0.90 16 29 H 0.41 -1.41 6.06 -92.71 -0.56 -1.97 16 30 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.09 0.00 7.40 -2.38 -0.02 -0.02 16 32 H 0.10 -0.45 7.90 -2.39 -0.02 -0.47 16 33 H 0.08 -0.20 8.10 -2.39 -0.02 -0.22 16 34 H 0.06 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.06 -0.38 7.85 -2.38 -0.02 -0.40 16 36 H 0.40 -3.48 9.12 -74.06 -0.68 -4.16 16 37 H 0.10 -0.66 8.10 -2.39 -0.02 -0.68 16 38 H 0.11 -0.78 8.10 -2.39 -0.02 -0.80 16 39 H 0.13 0.81 7.65 -2.91 -0.02 0.79 16 Total: 0.00 -19.54 351.50 -2.40 -21.94 By element: Atomic # 1 Polarization: -13.60 SS G_CDS: -0.71 Total: -14.31 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 2.73 Total: 7.08 kcal Atomic # 7 Polarization: -0.32 SS G_CDS: -2.52 Total: -2.84 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -4.00 Total: -11.12 kcal Atomic # 9 Polarization: -0.13 SS G_CDS: 0.75 Total: 0.61 kcal Atomic # 14 Polarization: -2.76 SS G_CDS: 2.04 Total: -0.72 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -0.69 Total: -0.64 kcal Total: -19.54 -2.40 -21.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_12335870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.519 kcal (2) G-P(sol) polarization free energy of solvation -19.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds