Wall clock time and date at job start Sun Mar 7 2021 09:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47446 * 2 1 4 4 C 1.53006 * 109.47154 * 173.75884 * 3 2 1 5 5 C 1.52997 * 109.47454 * 293.76255 * 3 2 1 6 6 C 1.50693 * 109.47276 * 175.45733 * 5 3 2 7 7 O 1.21281 * 120.00470 * 118.01031 * 6 5 3 8 8 N 1.34786 * 119.99869 * 298.01178 * 6 5 3 9 9 C 1.46498 * 119.99764 * 185.03531 * 8 6 5 10 10 C 1.53007 * 109.46860 * 184.90105 * 9 8 6 11 11 F 1.39897 * 112.84816 * 43.23776 * 10 9 8 12 12 C 1.53776 * 113.61441 * 174.43262 * 10 9 8 13 13 C 1.53785 * 87.07996 * 139.98096 * 12 10 9 14 14 H 1.09005 * 113.61508 * 220.01993 * 13 12 10 15 15 C 1.52995 * 113.61032 * 89.20162 * 13 12 10 16 16 O 1.42900 * 109.46943 * 175.00177 * 15 13 12 17 17 C 1.53777 * 113.61430 * 271.93410 * 10 9 8 18 18 N 1.46499 * 109.46841 * 295.45626 * 5 3 2 19 19 C 1.36342 * 125.63638 * 295.06684 * 18 5 3 20 20 C 1.34855 * 108.21913 * 180.26678 * 19 18 5 21 21 C 1.40889 * 107.41580 * 359.73798 * 20 19 18 22 22 C 1.34854 * 107.41938 * 0.02562 * 21 20 19 23 23 C 1.50697 * 125.89175 * 179.97438 * 22 21 20 24 24 O 1.42898 * 109.47178 * 210.02188 * 23 22 21 25 25 Si 1.86299 * 109.47211 * 330.02261 * 23 22 21 26 26 H 1.08996 * 109.47106 * 304.86403 * 1 2 3 27 27 H 1.09007 * 109.47151 * 64.85519 * 1 2 3 28 28 H 1.08998 * 109.47440 * 184.85687 * 1 2 3 29 29 H 1.09005 * 109.47196 * 240.00061 * 2 1 3 30 30 H 1.08998 * 109.47422 * 120.00713 * 2 1 3 31 31 H 1.08999 * 109.46671 * 53.76433 * 3 2 1 32 32 H 1.08994 * 109.47056 * 170.67455 * 4 3 2 33 33 H 1.09005 * 109.46943 * 290.67407 * 4 3 2 34 34 H 1.09002 * 109.46985 * 50.66952 * 4 3 2 35 35 H 1.09002 * 109.47215 * 55.45076 * 5 3 2 36 36 H 0.97002 * 119.99596 * 5.03960 * 8 6 5 37 37 H 1.08998 * 109.47397 * 304.90304 * 9 8 6 38 38 H 1.08999 * 109.47364 * 64.90549 * 9 8 6 39 39 H 1.08994 * 113.61769 * 254.53086 * 12 10 9 40 40 H 1.09006 * 113.61571 * 25.35393 * 12 10 9 41 41 H 1.08998 * 109.47438 * 294.99803 * 15 13 12 42 42 H 1.08997 * 109.47667 * 55.00298 * 15 13 12 43 43 H 0.96702 * 114.00552 * 180.02562 * 16 15 13 44 44 H 1.08999 * 113.61680 * 334.56557 * 17 10 9 45 45 H 1.08995 * 113.61676 * 105.46920 * 17 10 9 46 46 H 1.08003 * 125.89460 * 359.97438 * 19 18 5 47 47 H 1.08000 * 126.29134 * 179.76468 * 20 19 18 48 48 H 1.08003 * 126.29013 * 179.97438 * 21 20 19 49 49 H 1.09003 * 109.46792 * 90.02578 * 23 22 21 50 50 H 0.96700 * 114.00357 * 179.97438 * 24 23 22 51 51 H 1.48494 * 110.00018 * 300.00057 * 25 23 22 52 52 H 1.48499 * 109.99948 * 61.31916 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5620 1.4453 0.1568 5 6 1.6621 2.1172 -1.3202 6 6 2.0655 3.5684 -1.2761 7 8 2.8819 3.9952 -2.0650 8 7 1.5189 4.3923 -0.3600 9 6 1.8265 5.8243 -0.3867 10 6 1.1826 6.5069 0.8218 11 9 1.3360 5.7753 2.0044 12 6 1.5574 7.9916 0.9629 13 6 0.0949 8.2412 1.3673 14 1 -0.3246 9.1552 0.9467 15 6 -0.1563 8.1092 2.8708 16 8 -1.5079 8.4707 3.1614 17 6 -0.2597 6.9761 0.5682 18 7 2.3558 1.4508 -2.4251 19 6 3.7055 1.4278 -2.6171 20 6 3.9598 0.7243 -3.7392 21 6 2.7222 0.2923 -4.2556 22 6 1.7587 0.7487 -3.4298 23 6 0.2772 0.5261 -3.5926 24 8 -0.4348 1.6329 -3.0358 25 14 -0.1324 0.3721 -5.4035 26 1 -0.3633 0.5874 0.8432 27 1 -0.3634 0.4367 -0.9303 28 1 -0.3634 -1.0239 0.0870 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5884 1.9875 0.8289 32 1 3.9424 2.4532 -0.0082 33 1 3.8242 1.1182 1.1631 34 1 4.0037 0.7662 -0.5725 35 1 0.5850 2.0437 -1.4704 36 1 0.9220 4.0369 0.3170 37 1 2.9068 5.9647 -0.3504 38 1 1.4338 6.2633 -1.3038 39 1 2.2712 8.1876 1.7630 40 1 1.8378 8.4626 0.0207 41 1 0.0184 7.0785 3.1792 42 1 0.5209 8.7701 3.4117 43 1 -1.7383 8.4108 4.0987 44 1 -0.4776 7.1699 -0.4820 45 1 -1.0128 6.3524 1.0496 46 1 4.4434 1.8964 -1.9829 47 1 4.9332 0.5278 -4.1637 48 1 2.5725 -0.2956 -5.1492 49 1 -0.0117 -0.3890 -3.0756 50 1 -1.3963 1.5575 -3.1058 51 1 0.2568 1.6134 -6.1196 52 1 0.5771 -0.7946 -5.9872 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_12360566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:30 Heat of formation + Delta-G solvation = -85.313997 kcal Electronic energy + Delta-G solvation = -34560.069354 eV Core-core repulsion = 30056.691017 eV Total energy + Delta-G solvation = -4503.378337 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.199 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -48.96895 -42.95863 -40.78264 -39.83047 -37.84994 -37.68337 -37.21519 -35.75300 -33.13046 -31.68066 -30.90099 -30.43127 -28.32522 -27.08736 -26.59199 -25.93069 -24.62885 -22.99001 -22.29708 -21.80894 -21.58942 -20.28594 -20.00794 -19.09771 -18.40413 -18.28914 -17.81465 -17.24961 -17.18624 -16.90812 -16.77767 -16.20790 -15.92036 -15.69501 -15.53470 -15.35905 -15.21502 -14.98770 -14.87606 -14.76291 -14.53548 -14.44215 -14.18715 -13.82632 -13.77791 -13.62257 -13.47753 -13.39291 -13.22500 -13.20092 -12.84100 -12.80373 -12.47860 -12.26167 -12.04998 -11.94053 -11.85662 -11.81247 -11.59977 -11.57943 -11.32964 -11.13422 -10.80773 -10.53314 -10.36188 -9.68232 -8.97127 -4.99243 0.90495 1.29916 1.40615 1.60568 1.71189 1.91722 2.09864 2.16273 2.97658 3.06712 3.12108 3.16998 3.22134 3.34387 3.47387 3.49874 3.67432 3.75462 3.88749 3.94264 4.17146 4.19021 4.19980 4.28675 4.33505 4.39596 4.43307 4.46376 4.48287 4.51498 4.54064 4.57258 4.62991 4.63530 4.67573 4.70250 4.81150 4.84523 4.90784 4.97002 5.01111 5.10079 5.15150 5.16249 5.17359 5.22127 5.26420 5.27523 5.44610 5.87850 6.12885 6.14251 6.36132 6.83160 6.83264 6.93154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.115 4.115 3 C -0.092 4.092 4 C -0.162 4.162 5 C 0.111 3.889 6 C 0.509 3.491 7 O -0.566 6.566 8 N -0.710 5.710 9 C 0.114 3.886 10 C 0.083 3.917 11 F -0.192 7.192 12 C -0.137 4.137 13 C -0.116 4.116 14 H 0.092 0.908 15 C 0.083 3.917 16 O -0.593 6.593 17 C -0.140 4.140 18 N -0.406 5.406 19 C 0.013 3.987 20 C -0.225 4.225 21 C -0.229 4.229 22 C 0.022 3.978 23 C -0.045 4.045 24 O -0.562 6.562 25 Si 0.804 3.196 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.172 0.828 36 H 0.415 0.585 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.398 0.602 44 H 0.114 0.886 45 H 0.083 0.917 46 H 0.161 0.839 47 H 0.141 0.859 48 H 0.134 0.866 49 H 0.107 0.893 50 H 0.411 0.589 51 H -0.319 1.319 52 H -0.292 1.292 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.426 -0.648 5.358 9.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.153 4.153 3 C -0.111 4.111 4 C -0.219 4.219 5 C 0.006 3.994 6 C 0.295 3.705 7 O -0.444 6.444 8 N -0.363 5.363 9 C -0.010 4.010 10 C 0.064 3.936 11 F -0.172 7.172 12 C -0.175 4.175 13 C -0.134 4.134 14 H 0.111 0.889 15 C 0.006 3.994 16 O -0.401 6.401 17 C -0.178 4.178 18 N -0.081 5.081 19 C -0.117 4.117 20 C -0.249 4.249 21 C -0.253 4.253 22 C -0.089 4.089 23 C -0.154 4.154 24 O -0.374 6.374 25 Si 0.711 3.289 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.189 0.811 36 H 0.253 0.747 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.141 0.859 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.247 0.753 44 H 0.133 0.867 45 H 0.102 0.898 46 H 0.179 0.821 47 H 0.159 0.841 48 H 0.151 0.849 49 H 0.125 0.875 50 H 0.264 0.736 51 H -0.248 1.248 52 H -0.219 1.219 Dipole moment (debyes) X Y Z Total from point charges -6.164 0.111 3.803 7.244 hybrid contribution 1.060 -0.116 1.082 1.519 sum -5.104 -0.006 4.885 7.065 Atomic orbital electron populations 1.21933 0.93964 1.02793 1.03027 1.21516 0.97528 0.93987 1.02233 1.21600 0.97115 0.98287 0.94097 1.22196 0.95235 1.01229 1.03286 1.22020 1.01999 0.87849 0.87517 1.20915 0.80495 0.88813 0.80268 1.90769 1.34150 1.77764 1.41692 1.45629 1.49910 1.07921 1.32846 1.21865 1.01154 0.80174 0.97840 1.22210 0.99166 0.91503 0.80690 1.92824 1.96567 1.78985 1.48838 1.23606 0.96813 0.92129 1.04942 1.22281 0.96515 0.99908 0.94736 0.88921 1.22109 0.83187 0.99585 0.94549 1.86406 1.29311 1.91545 1.32866 1.23676 0.94285 0.96914 1.02915 1.43547 1.05298 1.39495 1.19738 1.21910 0.84938 1.04300 1.00567 1.21010 0.98533 1.06708 0.98649 1.20706 0.93104 1.09572 1.01946 1.20270 0.94031 1.02794 0.91855 1.24459 0.86057 0.92840 1.12042 1.86217 1.25605 1.43204 1.82336 0.95067 0.87490 0.75420 0.70952 0.91416 0.91383 0.92010 0.93195 0.90785 0.87274 0.93987 0.90583 0.91996 0.81149 0.74741 0.91030 0.89022 0.89265 0.85895 0.92554 0.92646 0.75258 0.86735 0.89837 0.82147 0.84122 0.84874 0.87529 0.73554 1.24833 1.21919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 1.02 9.58 71.98 0.69 1.71 16 2 C -0.12 0.29 5.33 30.59 0.16 0.46 16 3 C -0.09 0.16 2.16 -10.79 -0.02 0.13 16 4 C -0.16 -0.23 7.56 71.98 0.54 0.32 16 5 C 0.11 0.24 2.24 44.24 0.10 0.34 16 6 C 0.51 2.92 5.91 87.65 0.52 3.44 16 7 O -0.57 -8.46 15.12 -3.03 -0.05 -8.51 16 8 N -0.71 0.46 5.33 -463.05 -2.47 -2.01 16 9 C 0.11 -0.13 5.46 86.38 0.47 0.34 16 10 C 0.08 -0.31 1.72 -10.27 -0.02 -0.32 16 11 F -0.19 0.13 14.85 44.97 0.67 0.80 16 12 C -0.14 0.71 7.13 31.12 0.22 0.93 16 13 C -0.12 0.37 4.19 -10.27 -0.04 0.33 16 14 H 0.09 -0.20 8.14 -2.38 -0.02 -0.22 16 15 C 0.08 -0.18 6.66 71.98 0.48 0.30 16 16 O -0.59 0.00 13.66 -148.98 -2.03 -2.04 16 17 C -0.14 0.64 7.07 31.12 0.22 0.86 16 18 N -0.41 -3.13 1.81 -491.52 -0.89 -4.02 16 19 C 0.01 0.15 7.19 83.21 0.60 0.74 16 20 C -0.23 -2.73 10.86 22.14 0.24 -2.49 16 21 C -0.23 -2.59 9.43 22.14 0.21 -2.38 16 22 C 0.02 0.17 6.00 41.08 0.25 0.42 16 23 C -0.04 0.06 2.53 71.24 0.18 0.24 16 24 O -0.56 2.72 8.83 -148.98 -1.32 1.40 16 25 Si 0.80 -0.50 31.25 68.60 2.14 1.64 16 26 H 0.07 -0.55 8.14 -2.39 -0.02 -0.57 16 27 H 0.07 -0.49 5.11 -2.38 -0.01 -0.50 16 28 H 0.06 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.05 0.10 7.39 -2.38 -0.02 0.08 16 30 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.11 -0.62 7.45 -2.39 -0.02 -0.64 16 32 H 0.04 0.19 6.72 -2.39 -0.02 0.17 16 33 H 0.08 -0.08 8.14 -2.38 -0.02 -0.09 16 34 H 0.06 0.26 5.61 -2.39 -0.01 0.25 16 35 H 0.17 -0.20 3.55 -2.39 -0.01 -0.21 16 36 H 0.42 -2.14 7.44 -92.71 -0.69 -2.83 16 37 H 0.07 0.13 8.10 -2.39 -0.02 0.11 16 38 H 0.09 -0.13 7.83 -2.39 -0.02 -0.15 16 39 H 0.09 -0.45 8.10 -2.39 -0.02 -0.47 16 40 H 0.12 -0.95 8.10 -2.38 -0.02 -0.97 16 41 H 0.06 -0.12 6.32 -2.39 -0.02 -0.13 16 42 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.40 -3.19 9.12 -74.06 -0.68 -3.87 16 44 H 0.11 -0.75 7.89 -2.39 -0.02 -0.77 16 45 H 0.08 -0.30 8.10 -2.39 -0.02 -0.32 16 46 H 0.16 1.65 6.20 -2.91 -0.02 1.63 16 47 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 48 H 0.13 1.36 6.74 -2.91 -0.02 1.34 16 49 H 0.11 -0.69 7.77 -2.39 -0.02 -0.71 16 50 H 0.41 -6.60 8.74 -74.06 -0.65 -7.24 16 51 H -0.32 -3.34 7.11 99.48 0.71 -2.63 16 52 H -0.29 -1.55 6.89 99.48 0.69 -0.86 16 Total: 0.00 -26.35 399.08 -0.18 -26.53 By element: Atomic # 1 Polarization: -18.13 SS G_CDS: -1.03 Total: -19.17 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 4.80 Total: 5.37 kcal Atomic # 7 Polarization: -2.67 SS G_CDS: -3.36 Total: -6.03 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -3.40 Total: -9.14 kcal Atomic # 9 Polarization: 0.13 SS G_CDS: 0.67 Total: 0.80 kcal Atomic # 14 Polarization: -0.50 SS G_CDS: 2.14 Total: 1.64 kcal Total: -26.35 -0.18 -26.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_12360566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.785 kcal (2) G-P(sol) polarization free energy of solvation -26.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds