Wall clock time and date at job start Sun Mar 7 2021 09:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.47235 * 2 1 4 4 C 1.50693 * 109.47408 * 239.99735 * 2 1 3 5 5 C 1.38411 * 119.82838 * 300.00328 * 4 2 1 6 6 C 1.37887 * 120.17365 * 180.02562 * 5 4 2 7 7 C 1.39840 * 119.82292 * 359.97438 * 6 5 4 8 8 C 1.47205 * 120.16606 * 180.02562 * 7 6 5 9 9 C 1.34808 * 119.99889 * 179.97438 * 8 7 6 10 10 C 1.46427 * 120.00060 * 179.72394 * 9 8 7 11 11 O 1.21703 * 119.99940 * 0.27909 * 10 9 8 12 12 N 1.34777 * 120.00208 * 180.27992 * 10 9 8 13 13 C 1.46499 * 120.00065 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47198 * 179.97438 * 13 12 10 15 15 F 1.39900 * 112.84832 * 48.80297 * 14 13 12 16 16 C 1.53777 * 113.61269 * 180.02562 * 14 13 12 17 17 C 1.53784 * 87.07916 * 139.98244 * 16 14 13 18 18 H 1.09007 * 113.61325 * 220.01772 * 17 16 14 19 19 C 1.52998 * 113.61748 * 89.19871 * 17 16 14 20 20 O 1.42905 * 109.47130 * 175.00136 * 19 17 16 21 21 C 1.53784 * 113.61010 * 277.49800 * 14 13 12 22 22 C 1.39834 * 119.66270 * 0.27327 * 7 6 5 23 23 C 1.37893 * 119.82299 * 359.45168 * 22 7 6 24 24 H 0.96703 * 113.99467 * 60.00178 * 1 2 3 25 25 H 1.09003 * 109.46902 * 119.99470 * 2 1 3 26 26 H 1.48505 * 110.00262 * 59.99501 * 3 2 1 27 27 H 1.48495 * 110.00184 * 181.31551 * 3 2 1 28 28 H 1.07996 * 119.90895 * 359.97438 * 5 4 2 29 29 H 1.07999 * 120.08716 * 179.97438 * 6 5 4 30 30 H 1.08001 * 120.00393 * 0.02562 * 8 7 6 31 31 H 1.08002 * 120.00248 * 0.02562 * 9 8 7 32 32 H 0.97000 * 120.00140 * 359.97438 * 12 10 9 33 33 H 1.09000 * 109.47602 * 299.99940 * 13 12 10 34 34 H 1.08998 * 109.47492 * 59.99952 * 13 12 10 35 35 H 1.09002 * 113.61191 * 254.52809 * 16 14 13 36 36 H 1.08996 * 113.61890 * 25.43396 * 16 14 13 37 37 H 1.08998 * 109.47042 * 294.99949 * 19 17 16 38 38 H 1.09000 * 109.47165 * 55.00210 * 19 17 16 39 39 H 0.96699 * 113.99771 * 180.02562 * 20 19 17 40 40 H 1.08996 * 113.61648 * 334.56267 * 21 14 13 41 41 H 1.09005 * 113.61361 * 105.47107 * 21 14 13 42 42 H 1.07997 * 120.08770 * 179.69916 * 22 7 6 43 43 H 1.08006 * 119.91208 * 180.27114 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.5948 -2.0356 -1.4458 6 6 2.0510 -2.6927 -2.5689 7 6 2.8553 -2.0165 -3.4917 8 6 3.3460 -2.7105 -4.6936 9 6 4.1207 -2.0553 -5.5812 10 6 4.6138 -2.7474 -6.7736 11 8 4.3201 -3.9127 -6.9660 12 7 5.3930 -2.0939 -7.6582 13 6 5.8859 -2.7862 -8.8515 14 6 6.7397 -1.8259 -9.6821 15 9 7.6973 -1.1507 -8.9177 16 6 7.3077 -2.4580 -10.9637 17 6 7.0009 -1.1236 -11.6638 18 1 6.6035 -1.2408 -12.6721 19 6 8.1492 -0.1151 -11.5913 20 8 7.8177 1.0405 -12.3638 21 6 5.9164 -0.9035 -10.5965 22 6 3.1952 -0.6793 -3.2643 23 6 2.7265 -0.0344 -2.1393 24 1 -0.3932 0.4417 -0.7651 25 1 1.7923 -0.5138 0.8901 26 1 1.5614 2.4680 1.2085 27 1 3.5346 1.7703 -0.0320 28 1 0.9739 -2.5564 -0.7320 29 1 1.7879 -3.7268 -2.7355 30 1 3.0847 -3.7444 -4.8647 31 1 4.3816 -1.0213 -5.4103 32 1 5.6268 -1.1651 -7.5051 33 1 6.4895 -3.6428 -8.5514 34 1 5.0404 -3.1288 -9.4481 35 1 8.3722 -2.6850 -10.9038 36 1 6.7161 -3.2935 -11.3378 37 1 8.3121 0.1759 -10.5536 38 1 9.0571 -0.5692 -11.9882 39 1 8.5023 1.7235 -12.3634 40 1 4.9446 -1.3142 -10.8703 41 1 5.8572 0.1250 -10.2401 42 1 3.8199 -0.1520 -3.9700 43 1 2.9845 0.9997 -1.9644 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_12360594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:34 Heat of formation + Delta-G solvation = -96.842336 kcal Electronic energy + Delta-G solvation = -25734.884534 eV Core-core repulsion = 21662.130396 eV Total energy + Delta-G solvation = -4072.754138 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.93098 -40.96864 -40.48181 -39.78682 -37.79039 -37.21045 -35.65886 -35.07787 -32.24869 -31.49046 -30.18591 -27.58140 -27.04604 -26.47379 -24.16639 -23.78821 -22.77936 -21.98382 -20.67335 -20.05512 -18.90603 -18.51377 -18.14824 -17.63966 -17.09017 -16.88825 -16.81762 -16.43476 -16.26045 -16.09132 -15.88079 -15.58161 -15.37310 -15.24548 -15.01241 -14.67978 -14.55486 -14.26671 -14.17354 -13.82770 -13.68122 -13.47449 -13.29526 -13.17595 -13.02987 -12.45535 -12.27328 -12.04047 -11.80290 -11.71927 -11.59208 -11.37435 -11.30274 -11.11731 -10.79124 -10.44522 -10.26086 -9.99406 -9.25594 -5.00474 -0.57164 0.38606 0.86529 1.30676 1.62894 1.96520 2.04212 2.19567 2.80678 3.00547 3.11775 3.18887 3.27190 3.47091 3.49443 3.57980 3.67541 3.80997 3.91067 3.93815 4.14988 4.19689 4.22089 4.35108 4.37852 4.42815 4.43880 4.50550 4.56436 4.57889 4.66471 4.70049 4.82987 4.87074 4.93023 4.96302 5.06594 5.08294 5.13714 5.23992 5.32123 5.37705 5.47157 5.58698 5.89174 6.41641 6.75365 6.83572 7.11255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.079 4.079 3 Si 0.780 3.220 4 C -0.111 4.111 5 C -0.107 4.107 6 C -0.101 4.101 7 C -0.082 4.082 8 C -0.017 4.017 9 C -0.211 4.211 10 C 0.544 3.456 11 O -0.589 6.589 12 N -0.713 5.713 13 C 0.112 3.888 14 C 0.081 3.919 15 F -0.194 7.194 16 C -0.135 4.135 17 C -0.117 4.117 18 H 0.093 0.907 19 C 0.083 3.917 20 O -0.593 6.593 21 C -0.141 4.141 22 C -0.095 4.095 23 C -0.123 4.123 24 H 0.396 0.604 25 H 0.106 0.894 26 H -0.303 1.303 27 H -0.283 1.283 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.162 0.838 32 H 0.416 0.584 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.397 0.603 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.156 0.844 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.163 4.470 -2.981 5.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.188 4.188 3 Si 0.686 3.314 4 C -0.112 4.112 5 C -0.126 4.126 6 C -0.119 4.119 7 C -0.082 4.082 8 C -0.037 4.037 9 C -0.231 4.231 10 C 0.335 3.665 11 O -0.472 6.472 12 N -0.365 5.365 13 C -0.012 4.012 14 C 0.062 3.938 15 F -0.174 7.174 16 C -0.173 4.173 17 C -0.136 4.136 18 H 0.111 0.889 19 C 0.005 3.995 20 O -0.402 6.402 21 C -0.179 4.179 22 C -0.113 4.113 23 C -0.140 4.140 24 H 0.246 0.754 25 H 0.123 0.877 26 H -0.231 1.231 27 H -0.209 1.209 28 H 0.147 0.853 29 H 0.155 0.845 30 H 0.142 0.858 31 H 0.179 0.821 32 H 0.253 0.747 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.143 0.857 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.247 0.753 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.174 0.826 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.036 3.618 -2.270 4.395 hybrid contribution 0.867 -0.133 0.591 1.058 sum 1.902 3.485 -1.679 4.311 Atomic orbital electron populations 1.86476 1.17191 1.82193 1.50538 1.25253 0.85365 1.11060 0.97155 0.93684 0.77831 0.75045 0.84796 1.20619 0.98447 0.95144 0.96974 1.21071 0.99538 0.94281 0.97661 1.21616 0.96216 1.00585 0.93524 1.19113 0.99609 0.94615 0.94881 1.22374 0.91446 0.99210 0.90670 1.22969 1.03133 1.02307 0.94705 1.18716 0.77954 0.85951 0.83901 1.90822 1.59963 1.18592 1.77776 1.45662 1.51270 1.16483 1.23057 1.21829 0.98137 0.94821 0.86417 1.22232 0.88190 0.93612 0.89767 1.92826 1.65685 1.81511 1.77412 1.23598 1.03804 0.97710 0.92214 1.22296 0.96163 0.94756 1.00381 0.88904 1.22120 0.96247 0.86049 0.95049 1.86407 1.49312 1.30803 1.73684 1.23652 0.98970 1.00554 0.94680 1.21658 0.98676 0.93345 0.97572 1.21179 0.98063 1.00444 0.94296 0.75424 0.87662 1.23121 1.20949 0.85306 0.84499 0.85776 0.82081 0.74732 0.91065 0.88743 0.89219 0.85662 0.92649 0.92550 0.75273 0.86741 0.90099 0.82629 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.20 12.76 -148.98 -1.90 -1.70 16 2 C -0.08 0.11 2.82 71.23 0.20 0.31 16 3 Si 0.78 -2.68 29.77 68.60 2.04 -0.64 16 4 C -0.11 0.12 5.40 -19.79 -0.11 0.01 16 5 C -0.11 -0.06 9.59 22.23 0.21 0.16 16 6 C -0.10 -0.03 9.80 22.57 0.22 0.19 16 7 C -0.08 0.03 5.87 -20.15 -0.12 -0.09 16 8 C -0.02 -0.01 9.46 23.84 0.23 0.21 16 9 C -0.21 0.21 9.41 23.62 0.22 0.43 16 10 C 0.54 2.28 7.74 86.37 0.67 2.94 16 11 O -0.59 -7.59 16.23 -4.36 -0.07 -7.66 16 12 N -0.71 0.68 5.46 -467.33 -2.55 -1.87 16 13 C 0.11 -0.15 5.37 86.38 0.46 0.31 16 14 C 0.08 -0.27 1.66 -10.27 -0.02 -0.29 16 15 F -0.19 -0.03 15.02 44.97 0.68 0.65 16 16 C -0.14 0.71 7.13 31.12 0.22 0.93 16 17 C -0.12 0.34 4.19 -10.28 -0.04 0.29 16 18 H 0.09 -0.18 8.14 -2.38 -0.02 -0.20 16 19 C 0.08 -0.14 6.66 71.98 0.48 0.34 16 20 O -0.59 -0.35 13.66 -148.98 -2.04 -2.38 16 21 C -0.14 0.57 7.07 31.11 0.22 0.79 16 22 C -0.09 0.33 9.41 22.57 0.21 0.54 16 23 C -0.12 0.43 8.65 22.23 0.19 0.62 16 24 H 0.40 -3.36 8.70 -74.05 -0.64 -4.01 16 25 H 0.11 0.02 7.96 -2.39 -0.02 0.00 16 26 H -0.30 -1.42 7.11 99.48 0.71 -0.72 16 27 H -0.28 -0.21 7.11 99.48 0.71 0.50 16 28 H 0.13 0.02 8.06 -2.91 -0.02 -0.01 16 29 H 0.14 -0.25 8.06 -2.91 -0.02 -0.28 16 30 H 0.12 0.42 7.52 -2.91 -0.02 0.39 16 31 H 0.16 -1.28 6.07 -2.91 -0.02 -1.30 16 32 H 0.42 -2.25 8.17 -92.71 -0.76 -3.01 16 33 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.09 -0.18 7.94 -2.39 -0.02 -0.20 16 35 H 0.09 -0.47 8.10 -2.39 -0.02 -0.49 16 36 H 0.13 -1.03 8.10 -2.39 -0.02 -1.05 16 37 H 0.06 -0.08 6.32 -2.39 -0.02 -0.09 16 38 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.40 -2.98 9.12 -74.06 -0.68 -3.66 16 40 H 0.11 -0.69 7.96 -2.39 -0.02 -0.71 16 41 H 0.08 -0.22 8.10 -2.38 -0.02 -0.24 16 42 H 0.16 -1.40 6.17 -2.91 -0.02 -1.41 16 43 H 0.15 -1.17 4.85 -2.91 -0.01 -1.18 16 Total: 0.00 -22.15 362.96 -1.56 -23.71 By element: Atomic # 1 Polarization: -16.84 SS G_CDS: -0.97 Total: -17.81 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 3.26 Total: 7.70 kcal Atomic # 7 Polarization: 0.68 SS G_CDS: -2.55 Total: -1.87 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -4.01 Total: -11.74 kcal Atomic # 9 Polarization: -0.03 SS G_CDS: 0.68 Total: 0.65 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: 2.04 Total: -0.64 kcal Total: -22.15 -1.56 -23.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_12360594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.135 kcal (2) G-P(sol) polarization free energy of solvation -22.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds