Wall clock time and date at job start Sun Mar 7 2021 09:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86297 * 109.46869 * 2 1 4 4 C 1.50701 * 109.47297 * 119.99625 * 2 1 3 5 5 C 1.38621 * 119.84089 * 75.00144 * 4 2 1 6 6 F 1.35093 * 119.91563 * 359.97438 * 5 4 2 7 7 C 1.38105 * 120.16417 * 179.97438 * 5 4 2 8 8 C 1.39619 * 119.85335 * 0.02562 * 7 5 4 9 9 C 1.47697 * 120.15691 * 179.97438 * 8 7 5 10 10 O 1.21567 * 120.00007 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99880 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00148 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47195 * 179.97438 * 12 11 9 14 14 F 1.39897 * 112.84853 * 316.20183 * 13 12 11 15 15 C 1.53782 * 113.68757 * 87.46615 * 13 12 11 16 16 C 1.53780 * 87.07780 * 139.99118 * 15 13 12 17 17 H 1.09004 * 113.69037 * 220.00629 * 16 15 13 18 18 C 1.52999 * 113.61263 * 89.11550 * 16 15 13 19 19 O 1.42903 * 109.47256 * 87.50448 * 18 16 15 20 20 C 1.53776 * 87.08254 * 334.56594 * 16 15 13 21 21 C 1.39847 * 119.68816 * 0.27775 * 8 7 5 22 22 F 1.35107 * 120.08041 * 179.72382 * 21 8 7 23 23 C 1.38224 * 119.84651 * 254.98183 * 4 2 1 24 24 H 0.96703 * 114.00482 * 299.99372 * 1 2 3 25 25 H 1.08994 * 109.47074 * 239.99891 * 2 1 3 26 26 H 1.48508 * 109.99994 * 299.99956 * 3 2 1 27 27 H 1.48504 * 110.00078 * 61.31554 * 3 2 1 28 28 H 1.07998 * 120.07210 * 180.02562 * 7 5 4 29 29 H 0.97001 * 119.99606 * 359.97438 * 11 9 8 30 30 H 1.09003 * 109.46810 * 60.00192 * 12 11 9 31 31 H 1.08992 * 109.47295 * 300.00230 * 12 11 9 32 32 H 1.08997 * 113.61384 * 25.44226 * 15 13 12 33 33 H 1.08997 * 113.61292 * 254.53939 * 15 13 12 34 34 H 1.08997 * 109.47286 * 327.50008 * 18 16 15 35 35 H 1.09008 * 109.47201 * 207.49789 * 18 16 15 36 36 H 0.96700 * 114.00311 * 180.02562 * 19 18 16 37 37 H 1.09006 * 113.61047 * 139.98212 * 20 16 15 38 38 H 1.09000 * 113.61971 * 270.79888 * 20 16 15 39 39 H 1.08006 * 119.92296 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.8679 -2.0932 1.3029 6 9 1.3559 -2.7991 0.2711 7 6 2.3269 -2.7510 2.4271 8 6 2.8553 -2.0201 3.4929 9 6 3.3476 -2.7167 4.6986 10 8 3.8076 -2.0774 5.6247 11 7 3.2877 -4.0611 4.7718 12 6 3.7765 -4.7522 5.9675 13 6 3.5942 -6.2614 5.7946 14 9 2.3486 -6.5999 5.2552 15 6 4.7769 -6.9503 5.0935 16 6 4.5970 -8.1034 6.0949 17 1 5.5371 -8.5165 6.4607 18 6 3.6195 -9.1805 5.6202 19 8 4.3215 -10.1503 4.8400 20 6 3.9648 -7.0740 7.0465 21 6 2.9105 -0.6248 3.4159 22 9 3.4152 0.0907 4.4449 23 6 2.4536 0.0201 2.2814 24 1 -0.3934 0.4416 0.7651 25 1 1.7923 -0.5138 -0.8899 26 1 1.5613 2.4679 -1.2086 27 1 1.5877 2.4586 1.2242 28 1 2.2771 -3.8285 2.4818 29 1 2.9210 -4.5711 4.0326 30 1 3.2125 -4.4158 6.8375 31 1 4.8334 -4.5275 6.1105 32 1 5.7213 -6.4178 5.2058 33 1 4.5687 -7.2319 4.0613 34 1 2.8395 -8.7211 5.0130 35 1 3.1677 -9.6675 6.4844 36 1 3.7626 -10.8647 4.5047 37 1 3.1010 -7.4556 7.5909 38 1 4.6870 -6.5764 7.6937 39 1 2.4999 1.0973 2.2184 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_12360598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:37 Heat of formation + Delta-G solvation = -191.747794 kcal Electronic energy + Delta-G solvation = -28574.817823 eV Core-core repulsion = 23842.804084 eV Total energy + Delta-G solvation = -4732.013739 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.13213 -50.12667 -48.96861 -41.39603 -40.11087 -39.70976 -37.80314 -37.21984 -35.84821 -33.51054 -31.41416 -30.37602 -28.03126 -27.07072 -26.63305 -24.44975 -23.84980 -22.81917 -21.95186 -20.28416 -19.80508 -19.02277 -18.70821 -18.39661 -18.03011 -17.45246 -17.29295 -17.17650 -16.88938 -16.76271 -16.51685 -16.29039 -16.06905 -15.95445 -15.87490 -15.60854 -15.38446 -15.29133 -15.07196 -14.55729 -14.30628 -14.16032 -13.84968 -13.77362 -13.48364 -13.20923 -13.17802 -13.00152 -12.47053 -12.42363 -11.93040 -11.81828 -11.64805 -11.32586 -11.26528 -10.81677 -10.78624 -10.65748 -10.34153 -9.85860 -4.95809 -0.85439 -0.34202 1.15402 1.33216 1.54194 1.72522 1.91403 2.18970 2.75196 2.80051 2.99362 3.06178 3.09710 3.15005 3.21214 3.25273 3.43528 3.47145 3.50477 3.74741 3.90071 4.12941 4.21101 4.29257 4.36243 4.36903 4.41416 4.48500 4.55596 4.58379 4.66282 4.66393 4.69516 4.69857 4.86566 4.92465 4.99886 5.14337 5.28645 5.34856 6.15610 6.38144 6.82810 6.86259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.089 4.089 3 Si 0.776 3.224 4 C -0.089 4.089 5 C 0.104 3.896 6 F -0.128 7.128 7 C -0.079 4.079 8 C -0.148 4.148 9 C 0.560 3.440 10 O -0.556 6.556 11 N -0.709 5.709 12 C 0.112 3.888 13 C 0.080 3.920 14 F -0.194 7.194 15 C -0.143 4.143 16 C -0.118 4.118 17 H 0.093 0.907 18 C 0.082 3.918 19 O -0.594 6.594 20 C -0.134 4.134 21 C 0.143 3.857 22 F -0.122 7.122 23 C -0.129 4.129 24 H 0.390 0.610 25 H 0.132 0.868 26 H -0.294 1.294 27 H -0.269 1.269 28 H 0.174 0.826 29 H 0.414 0.586 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.397 0.603 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.297 -2.427 -0.807 2.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.197 4.197 3 Si 0.679 3.321 4 C -0.090 4.090 5 C 0.084 3.916 6 F -0.106 7.106 7 C -0.098 4.098 8 C -0.152 4.152 9 C 0.347 3.653 10 O -0.435 6.435 11 N -0.362 5.362 12 C -0.012 4.012 13 C 0.061 3.939 14 F -0.174 7.174 15 C -0.181 4.181 16 C -0.136 4.136 17 H 0.111 0.889 18 C 0.004 3.996 19 O -0.402 6.402 20 C -0.172 4.172 21 C 0.122 3.878 22 F -0.101 7.101 23 C -0.147 4.147 24 H 0.240 0.760 25 H 0.150 0.850 26 H -0.222 1.222 27 H -0.195 1.195 28 H 0.191 0.809 29 H 0.252 0.748 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.247 0.753 37 H 0.108 0.892 38 H 0.145 0.855 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.961 -1.123 -0.546 2.325 hybrid contribution -1.997 -0.907 0.059 2.195 sum -0.036 -2.031 -0.487 2.089 Atomic orbital electron populations 1.86657 1.17492 1.80447 1.50252 1.25345 0.84187 1.12820 0.97319 0.93808 0.90016 0.70874 0.77414 1.20462 0.98709 0.92431 0.97446 1.17347 0.99160 0.89138 0.85928 1.91570 1.84391 1.78235 1.56421 1.21310 0.96148 1.02123 0.90244 1.19780 1.06517 0.92474 0.96455 1.18009 0.78520 0.82597 0.86145 1.90875 1.46454 1.66649 1.39521 1.45650 1.63665 1.05703 1.21221 1.21962 1.02158 0.88949 0.88102 1.22267 0.80784 0.93016 0.97830 1.92824 1.44042 1.93254 1.87287 1.23701 0.98090 0.96370 0.99889 1.22298 1.00263 0.94018 0.97028 0.88854 1.22138 0.93442 0.89337 0.94643 1.86407 1.41277 1.40262 1.72283 1.23600 1.02831 0.95386 0.95364 1.17752 0.96178 0.88229 0.85607 1.91610 1.84048 1.77505 1.56894 1.21116 1.00151 1.02456 0.90965 0.76008 0.85006 1.22175 1.19535 0.80893 0.74841 0.90264 0.88094 0.86509 0.90199 0.92657 0.92561 0.75295 0.89176 0.85462 0.80931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.05 12.88 -148.98 -1.92 -1.97 16 2 C -0.09 0.29 2.44 71.24 0.17 0.47 16 3 Si 0.78 -4.02 30.23 68.60 2.07 -1.95 16 4 C -0.09 0.24 5.27 -19.78 -0.10 0.14 16 5 C 0.10 -0.14 7.23 22.33 0.16 0.02 16 6 F -0.13 -0.20 16.73 44.97 0.75 0.55 16 7 C -0.08 0.25 9.52 22.57 0.21 0.46 16 8 C -0.15 -0.18 5.88 -20.06 -0.12 -0.30 16 9 C 0.56 2.44 7.77 86.74 0.67 3.11 16 10 O -0.56 -6.92 15.34 -3.93 -0.06 -6.98 16 11 N -0.71 1.10 5.40 -466.12 -2.52 -1.42 16 12 C 0.11 -0.31 5.43 86.38 0.47 0.15 16 13 C 0.08 -0.35 1.73 -10.27 -0.02 -0.37 16 14 F -0.19 0.19 14.79 44.97 0.67 0.85 16 15 C -0.14 0.68 7.07 31.12 0.22 0.90 16 16 C -0.12 0.41 4.20 -10.27 -0.04 0.37 16 17 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 18 C 0.08 -0.16 6.65 71.98 0.48 0.32 16 19 O -0.59 -0.29 13.66 -148.98 -2.04 -2.32 16 20 C -0.13 0.84 7.12 31.12 0.22 1.06 16 21 C 0.14 0.35 7.28 22.67 0.17 0.52 16 22 F -0.12 -0.98 15.55 44.97 0.70 -0.28 16 23 C -0.13 0.33 8.62 22.27 0.19 0.52 16 24 H 0.39 -2.45 8.70 -74.06 -0.64 -3.10 16 25 H 0.13 -0.56 7.89 -2.39 -0.02 -0.58 16 26 H -0.29 -0.76 7.11 99.48 0.71 -0.06 16 27 H -0.27 0.71 6.68 99.48 0.66 1.37 16 28 H 0.17 -1.45 6.40 -2.91 -0.02 -1.47 16 29 H 0.41 -2.33 6.06 -92.71 -0.56 -2.89 16 30 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.10 -0.38 7.85 -2.39 -0.02 -0.40 16 32 H 0.12 -0.83 7.90 -2.39 -0.02 -0.84 16 33 H 0.08 -0.25 8.10 -2.39 -0.02 -0.27 16 34 H 0.06 -0.10 6.31 -2.39 -0.02 -0.11 16 35 H 0.06 -0.20 8.14 -2.38 -0.02 -0.22 16 36 H 0.40 -2.97 9.12 -74.06 -0.68 -3.64 16 37 H 0.09 -0.55 8.10 -2.38 -0.02 -0.57 16 38 H 0.13 -1.20 8.10 -2.39 -0.02 -1.22 16 39 H 0.17 -1.02 4.83 -2.91 -0.01 -1.04 16 Total: 0.00 -21.19 338.38 -0.38 -21.57 By element: Atomic # 1 Polarization: -14.68 SS G_CDS: -0.73 Total: -15.41 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 2.69 Total: 7.37 kcal Atomic # 7 Polarization: 1.10 SS G_CDS: -2.52 Total: -1.42 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -4.01 Total: -11.28 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 2.12 Total: 1.12 kcal Atomic # 14 Polarization: -4.02 SS G_CDS: 2.07 Total: -1.95 kcal Total: -21.19 -0.38 -21.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_12360598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.176 kcal (2) G-P(sol) polarization free energy of solvation -21.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds