Wall clock time and date at job start Sun Mar 7 2021 09:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47206 * 2 1 4 4 C 1.50704 * 109.47221 * 119.99823 * 2 1 3 5 5 C 1.34833 * 125.65107 * 65.29854 * 4 2 1 6 6 C 1.40795 * 107.04981 * 180.15919 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.56997 * 6 5 4 8 8 C 1.47561 * 125.94610 * 180.29927 * 7 6 5 9 9 C 1.39921 * 119.95683 * 359.72818 * 8 7 6 10 10 C 1.36433 * 120.28025 * 179.75878 * 9 8 7 11 11 C 1.39880 * 120.18184 * 0.51472 * 10 9 8 12 12 C 1.47296 * 120.04114 * 179.72023 * 11 10 9 13 13 O 1.21620 * 119.99710 * 180.02562 * 12 11 10 14 14 N 1.34769 * 119.99974 * 0.02562 * 12 11 10 15 15 C 1.46508 * 119.99632 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46759 * 180.02562 * 15 14 12 17 17 F 1.39905 * 112.84786 * 48.80972 * 16 15 14 18 18 C 1.53783 * 113.61062 * 180.02562 * 16 15 14 19 19 C 1.53785 * 87.08131 * 139.98588 * 18 16 15 20 20 H 1.09000 * 113.61293 * 220.02264 * 19 18 16 21 21 C 1.53002 * 113.61628 * 89.19772 * 19 18 16 22 22 O 1.42900 * 109.47073 * 175.00258 * 21 19 18 23 23 C 1.53777 * 113.61783 * 277.49861 * 16 15 14 24 24 C 1.40400 * 119.90712 * 359.74033 * 11 10 9 25 25 O 1.35686 * 120.13324 * 180.02562 * 24 11 10 26 26 C 1.38270 * 119.72922 * 359.97438 * 24 11 10 27 27 O 1.34226 * 125.65161 * 244.97880 * 4 2 1 28 28 H 0.96697 * 113.99755 * 300.00378 * 1 2 3 29 29 H 1.08999 * 109.47490 * 239.99782 * 2 1 3 30 30 H 1.48500 * 110.00036 * 299.99940 * 3 2 1 31 31 H 1.48497 * 110.00030 * 61.31762 * 3 2 1 32 32 H 1.07995 * 126.47634 * 359.97438 * 5 4 2 33 33 H 1.08002 * 126.63743 * 179.83926 * 6 5 4 34 34 H 1.08004 * 119.86052 * 0.02562 * 9 8 7 35 35 H 1.07995 * 119.90838 * 180.23485 * 10 9 8 36 36 H 0.97003 * 120.00766 * 0.02562 * 14 12 11 37 37 H 1.08990 * 109.47498 * 300.00169 * 15 14 12 38 38 H 1.08996 * 109.46875 * 60.00900 * 15 14 12 39 39 H 1.09003 * 113.61378 * 254.52998 * 18 16 15 40 40 H 1.08996 * 113.61493 * 25.35236 * 18 16 15 41 41 H 1.08993 * 109.47053 * 295.00328 * 21 19 18 42 42 H 1.08999 * 109.46676 * 55.00188 * 21 19 18 43 43 H 0.96691 * 113.99900 * 180.02562 * 22 21 19 44 44 H 1.09003 * 113.61436 * 334.56946 * 23 16 15 45 45 H 1.08999 * 113.61413 * 105.47031 * 23 16 15 46 46 H 0.96705 * 113.99498 * 269.97533 * 25 24 11 47 47 H 1.08003 * 120.09654 * 180.02562 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7617 -2.0192 1.5067 6 6 2.3802 -2.2627 2.7478 7 6 2.9080 -1.0784 3.1618 8 6 3.6580 -0.8543 4.4127 9 6 3.8743 -1.9165 5.2974 10 6 4.5711 -1.7179 6.4535 11 6 5.0650 -0.4474 6.7674 12 6 5.8115 -0.2351 8.0193 13 8 6.2403 0.8699 8.2917 14 7 6.0195 -1.2654 8.8628 15 6 6.7615 -1.0540 10.1083 16 6 6.8556 -2.3741 10.8761 17 9 7.2805 -3.4394 10.0750 18 6 7.6193 -2.2600 12.2061 19 6 6.5597 -3.2003 12.8046 20 1 6.2537 -2.9267 13.8144 21 6 6.9109 -4.6834 12.6714 22 8 5.9315 -5.4682 13.3546 23 6 5.6047 -2.6907 11.7127 24 6 4.8479 0.6251 5.8878 25 8 5.3254 1.8593 6.1875 26 6 4.1463 0.4183 4.7144 27 8 2.6271 -0.1463 2.2303 28 1 -0.3933 0.4417 0.7650 29 1 1.7924 -0.5139 -0.8899 30 1 1.5615 2.4679 -1.2085 31 1 1.5879 2.4586 1.2242 32 1 1.2459 -2.7431 0.8934 33 1 2.4304 -3.2076 3.2685 34 1 3.4918 -2.8988 5.0621 35 1 4.7378 -2.5428 7.1302 36 1 5.6779 -2.1469 8.6455 37 1 7.7648 -0.6963 9.8773 38 1 6.2435 -0.3144 10.7187 39 1 8.6191 -2.6931 12.1740 40 1 7.6059 -1.2571 12.6326 41 1 6.9270 -4.9597 11.6172 42 1 7.8923 -4.8651 13.1095 43 1 6.0913 -6.4208 13.3121 44 1 5.0396 -1.8057 12.0052 45 1 4.9776 -3.4714 11.2823 46 1 4.7092 2.4075 6.6924 47 1 3.9762 1.2390 4.0332 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_12807986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:54 Heat of formation + Delta-G solvation = -129.301334 kcal Electronic energy + Delta-G solvation = -33663.410943 eV Core-core repulsion = 28695.432613 eV Total energy + Delta-G solvation = -4967.978330 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.140 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -48.92972 -43.75359 -41.59080 -40.08116 -39.52370 -38.21723 -37.89958 -37.18421 -35.65893 -34.26382 -33.51383 -31.39607 -30.83394 -29.89477 -27.45097 -27.03968 -26.46580 -24.40794 -24.08144 -22.93522 -22.38316 -21.99490 -21.35069 -20.19843 -19.82098 -19.07310 -18.60788 -18.38977 -17.74731 -17.59092 -17.46340 -17.07639 -16.90878 -16.66406 -16.48659 -16.20775 -16.05627 -15.82999 -15.72175 -15.44805 -15.34538 -15.10766 -14.65486 -14.43982 -14.27451 -14.25447 -13.99056 -13.80434 -13.74309 -13.61473 -13.49922 -13.44689 -13.17028 -12.96385 -12.73492 -12.45018 -12.19367 -11.93579 -11.79409 -11.56852 -11.30077 -11.15066 -10.99224 -10.85357 -10.77936 -10.65081 -10.25678 -9.97867 -9.03410 -4.98659 -0.82116 0.12207 0.62369 1.12082 1.41564 1.43804 1.68388 1.87085 1.88189 1.92884 2.61329 2.98927 3.01035 3.11759 3.17924 3.20795 3.26202 3.34893 3.49157 3.58376 3.65008 3.85690 3.90840 3.97149 3.99082 4.19822 4.21818 4.35223 4.38305 4.42069 4.43667 4.54833 4.57191 4.63523 4.66999 4.68884 4.70683 4.78409 4.87549 4.88204 4.93571 5.03731 5.06258 5.08158 5.19146 5.21040 5.31039 5.41881 5.50719 5.94844 6.31203 6.33988 6.68210 6.84039 7.06066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.033 4.033 3 Si 0.761 3.239 4 C -0.050 4.050 5 C -0.182 4.182 6 C -0.172 4.172 7 C 0.005 3.995 8 C 0.027 3.973 9 C -0.110 4.110 10 C -0.052 4.052 11 C -0.180 4.180 12 C 0.558 3.442 13 O -0.559 6.559 14 N -0.714 5.714 15 C 0.114 3.886 16 C 0.080 3.920 17 F -0.194 7.194 18 C -0.135 4.135 19 C -0.118 4.118 20 H 0.092 0.908 21 C 0.083 3.917 22 O -0.594 6.594 23 C -0.141 4.141 24 C 0.163 3.837 25 O -0.494 6.494 26 C -0.152 4.152 27 O -0.176 6.176 28 H 0.390 0.610 29 H 0.157 0.843 30 H -0.281 1.281 31 H -0.294 1.294 32 H 0.167 0.833 33 H 0.181 0.819 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.397 0.603 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.409 0.591 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 -5.548 1.572 5.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.142 4.142 3 Si 0.665 3.335 4 C -0.100 4.100 5 C -0.201 4.201 6 C -0.190 4.190 7 C -0.044 4.044 8 C 0.027 3.973 9 C -0.127 4.127 10 C -0.071 4.071 11 C -0.184 4.184 12 C 0.347 3.653 13 O -0.439 6.439 14 N -0.368 5.368 15 C -0.010 4.010 16 C 0.062 3.938 17 F -0.174 7.174 18 C -0.173 4.173 19 C -0.136 4.136 20 H 0.111 0.889 21 C 0.005 3.995 22 O -0.402 6.402 23 C -0.179 4.179 24 C 0.117 3.883 25 O -0.307 6.307 26 C -0.170 4.170 27 O -0.074 6.074 28 H 0.240 0.760 29 H 0.174 0.826 30 H -0.207 1.207 31 H -0.221 1.221 32 H 0.185 0.815 33 H 0.199 0.801 34 H 0.186 0.814 35 H 0.183 0.817 36 H 0.250 0.750 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.144 0.856 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.247 0.753 44 H 0.133 0.867 45 H 0.100 0.900 46 H 0.269 0.731 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.013 -3.558 1.065 3.714 hybrid contribution -1.248 -0.848 0.447 1.574 sum -1.261 -4.407 1.512 4.827 Atomic orbital electron populations 1.86639 1.17192 1.80376 1.50041 1.24462 0.83558 1.11986 0.94239 0.93610 0.90620 0.72148 0.77078 1.23165 1.00549 0.94180 0.92137 1.21841 1.04110 0.95741 0.98379 1.22248 1.00840 0.98912 0.97048 1.20552 1.04632 0.87990 0.91262 1.17937 0.95349 0.93859 0.90204 1.21036 0.99322 0.99403 0.92982 1.21126 0.93900 0.95139 0.96924 1.20491 1.05669 0.96122 0.96105 1.18185 0.79461 0.84196 0.83505 1.90825 1.51687 1.25208 1.76151 1.45669 1.57204 1.12621 1.21285 1.21853 0.97844 0.96144 0.85170 1.22240 0.98761 0.83413 0.89421 1.92829 1.91152 1.57996 1.75416 1.23597 0.99047 1.02406 0.92258 1.22296 0.97156 0.93642 1.00527 0.88928 1.22120 0.91002 0.90035 0.96307 1.86404 1.52421 1.23471 1.77920 1.23659 0.95594 1.03320 0.95293 1.18450 0.92099 0.85714 0.92051 1.84734 1.45664 1.23495 1.76805 1.21578 0.99391 0.98112 0.97942 1.83935 1.57944 1.38580 1.26904 0.76038 0.82562 1.20693 1.22102 0.81529 0.80135 0.81373 0.81695 0.74963 0.90997 0.88475 0.89219 0.85639 0.92565 0.92587 0.75283 0.86702 0.89993 0.73100 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.30 12.88 -148.98 -1.92 -2.22 16 2 C -0.03 0.06 2.98 71.24 0.21 0.27 16 3 Si 0.76 -0.57 32.11 68.60 2.20 1.63 16 4 C -0.05 -0.04 6.21 24.90 0.15 0.12 16 5 C -0.18 0.07 10.78 22.11 0.24 0.31 16 6 C -0.17 0.26 10.26 22.40 0.23 0.49 16 7 C 0.00 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.02 5.87 -20.08 -0.12 -0.10 16 9 C -0.11 0.47 9.48 22.26 0.21 0.68 16 10 C -0.05 0.21 9.47 22.25 0.21 0.42 16 11 C -0.18 -0.49 5.89 -19.97 -0.12 -0.61 16 12 C 0.56 3.06 7.75 86.63 0.67 3.73 16 13 O -0.56 -7.38 15.14 16.90 0.26 -7.12 16 14 N -0.71 0.56 5.42 -466.50 -2.53 -1.97 16 15 C 0.11 -0.20 5.36 86.38 0.46 0.27 16 16 C 0.08 -0.31 1.66 -10.27 -0.02 -0.33 16 17 F -0.19 0.10 15.02 44.97 0.68 0.77 16 18 C -0.14 0.77 7.13 31.12 0.22 0.99 16 19 C -0.12 0.39 4.19 -10.28 -0.04 0.35 16 20 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 21 C 0.08 -0.18 6.66 71.98 0.48 0.30 16 22 O -0.59 -0.10 13.66 -148.98 -2.04 -2.13 16 23 C -0.14 0.66 7.07 31.11 0.22 0.88 16 24 C 0.16 0.83 6.71 22.80 0.15 0.99 16 25 O -0.49 -3.59 11.56 -69.06 -0.80 -4.39 16 26 C -0.15 -0.48 9.65 22.61 0.22 -0.26 16 27 O -0.18 -0.55 8.79 -6.03 -0.05 -0.60 16 28 H 0.39 -1.69 8.70 -74.06 -0.64 -2.34 16 29 H 0.16 -0.87 7.96 -2.39 -0.02 -0.88 16 30 H -0.28 -1.30 7.11 99.48 0.71 -0.59 16 31 H -0.29 -1.65 7.11 99.48 0.71 -0.94 16 32 H 0.17 -0.53 8.06 -2.91 -0.02 -0.55 16 33 H 0.18 -1.35 7.24 -2.91 -0.02 -1.38 16 34 H 0.17 -1.75 6.95 -2.91 -0.02 -1.77 16 35 H 0.17 -1.74 6.37 -2.91 -0.02 -1.75 16 36 H 0.41 -2.23 6.19 -92.71 -0.57 -2.81 16 37 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.10 -0.26 7.94 -2.39 -0.02 -0.28 16 39 H 0.09 -0.50 8.10 -2.39 -0.02 -0.52 16 40 H 0.13 -1.09 8.10 -2.39 -0.02 -1.11 16 41 H 0.06 -0.11 6.32 -2.39 -0.02 -0.13 16 42 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.40 -3.13 9.12 -74.06 -0.68 -3.80 16 44 H 0.11 -0.78 7.96 -2.39 -0.02 -0.80 16 45 H 0.08 -0.29 8.10 -2.39 -0.02 -0.31 16 46 H 0.41 0.00 9.06 -74.05 -0.67 -0.67 16 47 H 0.14 0.40 7.90 -2.91 -0.02 0.38 16 Total: 0.00 -25.94 401.44 -2.08 -28.03 By element: Atomic # 1 Polarization: -19.22 SS G_CDS: -1.45 Total: -20.67 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 3.56 Total: 8.67 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -2.53 Total: -1.97 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -4.55 Total: -16.46 kcal Atomic # 9 Polarization: 0.10 SS G_CDS: 0.68 Total: 0.77 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: 2.20 Total: 1.63 kcal Total: -25.94 -2.08 -28.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_12807986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.273 kcal (2) G-P(sol) polarization free energy of solvation -25.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds