Wall clock time and date at job start Sun Mar 7 2021 09:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47130 * 2 1 4 4 C 1.50695 * 109.47468 * 239.99345 * 2 1 3 5 5 C 1.38899 * 119.67209 * 119.99905 * 4 2 1 6 6 C 1.36474 * 120.61181 * 179.72090 * 5 4 2 7 7 C 1.40061 * 119.83221 * 0.28434 * 6 5 4 8 8 C 1.41591 * 133.38361 * 179.97438 * 7 6 5 9 9 C 1.35857 * 107.73202 * 179.97438 * 8 7 6 10 10 C 1.47060 * 125.43072 * 180.02562 * 9 8 7 11 11 O 1.21650 * 119.99592 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00359 * 179.97438 * 10 9 8 13 13 C 1.46506 * 120.00235 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47224 * 180.02562 * 13 12 10 15 15 F 1.39897 * 112.85042 * 50.33280 * 14 13 12 16 16 C 1.53778 * 113.61476 * 181.53054 * 14 13 12 17 17 C 1.53781 * 87.08150 * 139.98295 * 16 14 13 18 18 H 1.09008 * 113.61062 * 220.02058 * 17 16 14 19 19 C 1.52995 * 113.61788 * 89.11592 * 17 16 14 20 20 O 1.42897 * 109.47060 * 174.99842 * 19 17 16 21 21 C 1.53783 * 113.61525 * 279.13871 * 14 13 12 22 22 N 1.38148 * 109.14885 * 359.97438 * 9 8 7 23 23 C 1.37492 * 108.78970 * 0.02562 * 22 9 8 24 24 C 1.37710 * 119.67811 * 300.28640 * 4 2 1 25 25 H 0.96702 * 114.00280 * 300.00646 * 1 2 3 26 26 H 1.09009 * 109.46679 * 119.99306 * 2 1 3 27 27 H 1.48503 * 109.99619 * 299.99342 * 3 2 1 28 28 H 1.48491 * 110.00253 * 61.31066 * 3 2 1 29 29 H 1.08002 * 119.69708 * 0.02562 * 5 4 2 30 30 H 1.08001 * 120.08857 * 180.25235 * 6 5 4 31 31 H 1.08005 * 126.13395 * 359.97438 * 8 7 6 32 32 H 0.96998 * 120.00069 * 0.02562 * 12 10 9 33 33 H 1.09001 * 109.46738 * 300.00135 * 13 12 10 34 34 H 1.09000 * 109.46946 * 60.00167 * 13 12 10 35 35 H 1.09005 * 113.61406 * 254.52891 * 16 14 13 36 36 H 1.08997 * 113.61497 * 25.43207 * 16 14 13 37 37 H 1.09001 * 109.47161 * 295.00127 * 19 17 16 38 38 H 1.09003 * 109.47187 * 55.00197 * 19 17 16 39 39 H 0.96704 * 113.99562 * 180.02562 * 20 19 17 40 40 H 1.09004 * 113.61184 * 334.56364 * 21 14 13 41 41 H 1.08997 * 113.61730 * 105.46844 * 21 14 13 42 42 H 0.96995 * 125.61060 * 180.02562 * 22 9 8 43 43 H 1.07999 * 120.09609 * 359.96546 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 2.7295 -0.0290 -2.1402 6 6 3.1997 -0.6554 -3.2578 7 6 2.8713 -1.9960 -3.4954 8 6 3.1899 -2.9064 -4.5320 9 6 2.5907 -4.0906 -4.2413 10 6 2.6672 -5.3087 -5.0617 11 8 3.3077 -5.3063 -6.0959 12 7 2.0278 -6.4278 -4.6677 13 6 2.1036 -7.6412 -5.4852 14 6 1.2961 -8.7567 -4.8184 15 9 0.0026 -8.3557 -4.4676 16 6 1.3418 -10.0909 -5.5817 17 6 1.4443 -10.7811 -4.2113 18 1 2.1392 -11.6208 -4.1963 19 6 0.0867 -11.1205 -3.5929 20 8 0.2845 -11.8582 -2.3852 21 6 2.0499 -9.4682 -3.6824 22 7 1.8990 -3.9685 -3.0517 23 6 2.0582 -2.6883 -2.5763 24 6 1.5899 -2.0273 -1.4445 25 1 -0.3934 0.4418 0.7650 26 1 1.7923 -0.5138 0.8901 27 1 1.5616 2.4678 -1.2086 28 1 1.5878 2.4586 1.2240 29 1 2.9845 1.0047 -1.9591 30 1 3.8230 -0.1185 -3.9576 31 1 3.7998 -2.6970 -5.3984 32 1 1.5168 -6.4297 -3.8432 33 1 1.6943 -7.4386 -6.4749 34 1 3.1442 -7.9517 -5.5789 35 1 0.4204 -10.3190 -6.1177 36 1 2.2323 -10.2107 -6.1986 37 1 -0.4524 -10.1992 -3.3718 38 1 -0.4924 -11.7208 -4.2946 39 1 -0.5359 -12.1082 -1.9382 40 1 3.1344 -9.4175 -3.7792 41 1 1.6995 -9.1944 -2.6873 42 1 1.3855 -4.6705 -2.6224 43 1 0.9654 -2.5474 -0.7332 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_13158378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:02:05 Heat of formation + Delta-G solvation = -75.943351 kcal Electronic energy + Delta-G solvation = -28037.008226 eV Core-core repulsion = 23771.508285 eV Total energy + Delta-G solvation = -4265.499941 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -48.99693 -42.72672 -40.74233 -39.82638 -38.89300 -37.26131 -37.10276 -35.84509 -33.35720 -31.58894 -30.46882 -30.18999 -27.57343 -27.08149 -26.29908 -24.27856 -23.20763 -22.79589 -21.93697 -21.30198 -20.23577 -19.73648 -18.56387 -18.48838 -18.03504 -17.65343 -17.18580 -16.98069 -16.90276 -16.52788 -16.31505 -15.98734 -15.69394 -15.49686 -15.26806 -15.16925 -15.06023 -14.80081 -14.65795 -14.30114 -14.24658 -13.89631 -13.76226 -13.52083 -13.51095 -13.21255 -12.72217 -12.51376 -12.33937 -12.17474 -11.85600 -11.76412 -11.68748 -11.37570 -11.35600 -10.99903 -10.83632 -10.49465 -10.42568 -9.35384 -8.84767 -4.87488 -0.40298 0.50559 0.90033 1.32976 1.63609 1.67532 1.85783 2.00326 2.11751 2.71706 2.96378 3.06478 3.12015 3.19993 3.38760 3.44416 3.53467 3.63211 3.84973 3.85481 4.02834 4.17263 4.20476 4.29109 4.33689 4.38241 4.42255 4.44345 4.51552 4.53043 4.62025 4.63283 4.66465 4.82774 4.86633 4.88528 4.95699 4.96836 5.09563 5.25084 5.29815 5.37907 5.52263 5.56301 5.94877 6.12603 6.35246 6.60535 6.79729 6.81955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.084 4.084 3 Si 0.766 3.234 4 C -0.051 4.051 5 C -0.149 4.149 6 C -0.056 4.056 7 C -0.136 4.136 8 C -0.112 4.112 9 C 0.006 3.994 10 C 0.589 3.411 11 O -0.554 6.554 12 N -0.714 5.714 13 C 0.112 3.888 14 C 0.078 3.922 15 F -0.195 7.195 16 C -0.133 4.133 17 C -0.117 4.117 18 H 0.094 0.906 19 C 0.082 3.918 20 O -0.594 6.594 21 C -0.143 4.143 22 N -0.566 5.566 23 C 0.107 3.893 24 C -0.113 4.113 25 H 0.395 0.605 26 H 0.099 0.901 27 H -0.300 1.300 28 H -0.288 1.288 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.409 0.591 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.397 0.603 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.429 0.571 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.519 -2.053 3.869 4.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.193 4.193 3 Si 0.672 3.328 4 C -0.053 4.053 5 C -0.167 4.167 6 C -0.075 4.075 7 C -0.140 4.140 8 C -0.139 4.139 9 C -0.103 4.103 10 C 0.376 3.624 11 O -0.432 6.432 12 N -0.366 5.366 13 C -0.011 4.011 14 C 0.060 3.940 15 F -0.176 7.176 16 C -0.171 4.171 17 C -0.136 4.136 18 H 0.112 0.888 19 C 0.005 3.995 20 O -0.402 6.402 21 C -0.180 4.180 22 N -0.172 5.172 23 C -0.003 4.003 24 C -0.133 4.133 25 H 0.246 0.754 26 H 0.117 0.883 27 H -0.227 1.227 28 H -0.215 1.215 29 H 0.163 0.837 30 H 0.169 0.831 31 H 0.177 0.823 32 H 0.245 0.755 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.147 0.853 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.247 0.753 40 H 0.134 0.866 41 H 0.097 0.903 42 H 0.270 0.730 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.362 -1.660 2.440 3.250 hybrid contribution -2.609 -0.552 1.173 2.913 sum -1.247 -2.212 3.613 4.416 Atomic orbital electron populations 1.86549 1.18472 1.80721 1.51120 1.25017 0.84087 1.11851 0.98347 0.94025 0.90443 0.72064 0.76269 1.19235 0.97258 0.93065 0.95745 1.20660 1.00681 1.00481 0.94911 1.20627 0.97979 0.91747 0.97100 1.18445 1.03348 0.95659 0.96565 1.21113 1.01980 0.90780 1.00015 1.19959 1.03890 0.96237 0.90226 1.17212 0.78950 0.82027 0.84173 1.90864 1.43161 1.84191 1.25021 1.45637 1.52584 1.11013 1.27340 1.21960 1.01882 0.82497 0.94801 1.22283 0.78890 0.94073 0.98797 1.92830 1.39768 1.91920 1.93059 1.23590 1.06081 0.90951 0.96440 1.22332 0.97247 0.98275 0.95697 0.88762 1.22131 0.95869 0.95336 0.86208 1.86407 1.37885 1.76411 1.39509 1.23711 1.01813 0.94555 0.97965 1.41799 1.44862 1.11102 1.19465 1.18445 1.00120 0.85052 0.96730 1.19984 1.02485 0.94639 0.96219 0.75432 0.88326 1.22719 1.21501 0.83659 0.83057 0.82250 0.75513 0.90271 0.87876 0.89125 0.85335 0.92778 0.92499 0.75288 0.86556 0.90292 0.73045 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.81 12.73 -148.98 -1.90 -2.70 16 2 C -0.08 0.11 2.80 71.23 0.20 0.31 16 3 Si 0.77 -1.87 29.75 68.60 2.04 0.17 16 4 C -0.05 -0.11 5.43 -19.83 -0.11 -0.22 16 5 C -0.15 -0.18 8.59 22.02 0.19 0.01 16 6 C -0.06 -0.12 10.06 22.30 0.22 0.11 16 7 C -0.14 -0.70 6.16 -21.36 -0.13 -0.84 16 8 C -0.11 -0.65 10.53 22.54 0.24 -0.41 16 9 C 0.01 0.03 6.96 39.91 0.28 0.31 16 10 C 0.59 3.11 7.80 86.56 0.68 3.78 16 11 O -0.55 -6.85 16.84 -4.19 -0.07 -6.92 16 12 N -0.71 0.67 5.47 -466.71 -2.55 -1.89 16 13 C 0.11 -0.28 5.35 86.38 0.46 0.18 16 14 C 0.08 -0.32 1.63 -10.27 -0.02 -0.34 16 15 F -0.20 0.04 15.08 44.97 0.68 0.72 16 16 C -0.13 0.81 7.13 31.12 0.22 1.03 16 17 C -0.12 0.40 4.20 -10.21 -0.04 0.35 16 18 H 0.09 -0.24 8.14 -2.38 -0.02 -0.26 16 19 C 0.08 -0.15 6.65 71.98 0.48 0.33 16 20 O -0.59 -0.32 13.66 -148.98 -2.03 -2.36 16 21 C -0.14 0.65 7.08 31.18 0.22 0.88 16 22 N -0.57 -0.33 6.07 -177.18 -1.08 -1.40 16 23 C 0.11 0.43 7.25 39.13 0.28 0.71 16 24 C -0.11 -0.33 9.61 22.37 0.21 -0.11 16 25 H 0.40 -2.59 8.74 -74.06 -0.65 -3.24 16 26 H 0.10 -0.55 7.96 -2.38 -0.02 -0.57 16 27 H -0.30 -1.55 7.11 99.48 0.71 -0.84 16 28 H -0.29 -0.48 7.11 99.48 0.71 0.23 16 29 H 0.15 -0.44 4.82 -2.91 -0.01 -0.46 16 30 H 0.15 -0.40 8.06 -2.91 -0.02 -0.42 16 31 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 32 H 0.41 -1.98 7.29 -92.71 -0.68 -2.66 16 33 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.10 -0.39 7.98 -2.39 -0.02 -0.41 16 35 H 0.09 -0.55 8.10 -2.38 -0.02 -0.56 16 36 H 0.13 -1.22 8.10 -2.39 -0.02 -1.24 16 37 H 0.05 -0.08 6.31 -2.39 -0.02 -0.09 16 38 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.40 -2.95 9.12 -74.05 -0.68 -3.62 16 40 H 0.12 -0.79 7.99 -2.38 -0.02 -0.81 16 41 H 0.08 -0.24 8.10 -2.39 -0.02 -0.26 16 42 H 0.43 -2.34 8.12 -92.71 -0.75 -3.09 16 43 H 0.13 0.05 8.06 -2.91 -0.02 0.02 16 Total: 0.00 -23.01 362.28 -3.14 -26.15 By element: Atomic # 1 Polarization: -16.24 SS G_CDS: -1.61 Total: -17.85 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 3.39 Total: 6.08 kcal Atomic # 7 Polarization: 0.34 SS G_CDS: -3.63 Total: -3.29 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -4.00 Total: -11.98 kcal Atomic # 9 Polarization: 0.04 SS G_CDS: 0.68 Total: 0.72 kcal Atomic # 14 Polarization: -1.87 SS G_CDS: 2.04 Total: 0.17 kcal Total: -23.01 -3.14 -26.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_13158378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.794 kcal (2) G-P(sol) polarization free energy of solvation -23.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds