Wall clock time and date at job start Sun Mar 7 2021 09:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86301 * 109.47157 * 2 1 4 4 C 1.50697 * 109.47342 * 120.00670 * 2 1 3 5 5 C 1.38318 * 119.87993 * 64.99524 * 4 2 1 6 6 C 1.38021 * 120.11798 * 180.02562 * 5 4 2 7 7 C 1.39332 * 119.88149 * 359.97438 * 6 5 4 8 8 C 1.48391 * 120.12095 * 179.97438 * 7 6 5 9 9 C 1.39307 * 120.12206 * 56.76935 * 8 7 6 10 10 C 1.50700 * 120.06122 * 359.97438 * 9 8 7 11 11 C 1.50698 * 109.47632 * 81.11211 * 10 9 8 12 12 O 1.21286 * 119.99614 * 5.69640 * 11 10 9 13 13 N 1.34777 * 120.00498 * 185.69747 * 11 10 9 14 14 C 1.46501 * 119.99855 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46653 * 179.97438 * 14 13 11 16 16 F 1.39904 * 112.85068 * 50.33470 * 15 14 13 17 17 C 1.53781 * 113.61422 * 181.52801 * 15 14 13 18 18 C 1.53783 * 87.08117 * 140.06538 * 17 15 14 19 19 H 1.09003 * 113.61068 * 219.93362 * 18 17 15 20 20 C 1.52997 * 113.61239 * 89.11738 * 18 17 15 21 21 O 1.42896 * 109.47075 * 174.99793 * 20 18 17 22 22 C 1.53777 * 113.69310 * 279.06451 * 15 14 13 23 23 C 1.38038 * 119.87955 * 180.24950 * 9 8 7 24 24 C 1.38301 * 120.12238 * 359.45486 * 23 9 8 25 25 C 1.38342 * 120.24075 * 0.54680 * 24 23 9 26 26 C 1.38003 * 120.12016 * 359.72387 * 25 24 23 27 27 C 1.39333 * 119.75858 * 0.25672 * 7 6 5 28 28 C 1.38024 * 119.87674 * 359.49171 * 27 7 6 29 29 H 0.96697 * 113.99305 * 299.99797 * 1 2 3 30 30 H 1.09001 * 109.46685 * 240.00444 * 2 1 3 31 31 H 1.48500 * 109.99783 * 178.68377 * 3 2 1 32 32 H 1.48496 * 110.00211 * 300.00165 * 3 2 1 33 33 H 1.07994 * 119.94191 * 359.97438 * 5 4 2 34 34 H 1.08004 * 120.05692 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.46996 * 321.10914 * 10 9 8 36 36 H 1.09000 * 109.47092 * 201.11360 * 10 9 8 37 37 H 0.96997 * 119.99812 * 359.97438 * 13 11 10 38 38 H 1.08995 * 109.47514 * 59.99933 * 14 13 11 39 39 H 1.08998 * 109.47003 * 299.99345 * 14 13 11 40 40 H 1.09004 * 113.61487 * 254.61439 * 17 15 14 41 41 H 1.08999 * 113.61474 * 25.51294 * 17 15 14 42 42 H 1.08998 * 109.47346 * 295.00104 * 20 18 17 43 43 H 1.08998 * 109.47275 * 55.00053 * 20 18 17 44 44 H 0.96702 * 114.00044 * 180.02562 * 21 20 18 45 45 H 1.09000 * 113.61369 * 334.55519 * 22 15 14 46 46 H 1.08994 * 113.61825 * 105.45677 * 22 15 14 47 47 H 1.08004 * 119.94473 * 179.72341 * 23 9 8 48 48 H 1.07993 * 119.88061 * 180.25411 * 24 23 9 49 49 H 1.07996 * 119.94273 * 179.75220 * 25 24 23 50 50 H 1.08004 * 120.06002 * 179.97438 * 26 25 24 51 51 H 1.08005 * 120.06515 * 179.72471 * 27 7 6 52 52 H 1.08003 * 119.94005 * 180.25842 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.6832 -2.0612 1.3957 6 6 2.1406 -2.7167 2.5209 7 6 2.8539 -2.0156 3.4909 8 6 3.3477 -2.7150 4.7029 9 6 4.1781 -3.8266 4.5792 10 6 4.5771 -4.3224 3.2131 11 6 5.7182 -3.4889 2.6896 12 8 6.2318 -2.6500 3.3991 13 7 6.1680 -3.6756 1.4329 14 6 7.2777 -2.8656 0.9242 15 6 7.5895 -3.2753 -0.5166 16 9 6.4524 -3.3048 -1.3312 17 6 8.7696 -2.5066 -1.1340 18 6 9.1984 -3.8368 -1.7755 19 1 10.2764 -3.9985 -1.7662 20 6 8.5723 -4.0845 -3.1494 21 8 9.1169 -5.2797 -3.7124 22 6 8.4581 -4.5395 -0.6254 23 6 4.6303 -4.4765 5.7099 24 6 4.2695 -4.0192 6.9643 25 6 3.4451 -2.9158 7.0931 26 6 2.9827 -2.2618 5.9693 27 6 3.0969 -0.6541 3.3215 28 6 2.6395 -0.0096 2.1899 29 1 -0.3932 0.4417 0.7651 30 1 1.7923 -0.5138 -0.8900 31 1 3.5346 1.7702 0.0321 32 1 1.5615 2.4679 -1.2084 33 1 1.1298 -2.6036 0.6435 34 1 1.9458 -3.7713 2.6492 35 1 3.7275 -4.2421 2.5350 36 1 4.8899 -5.3643 3.2819 37 1 5.7575 -4.3467 0.8655 38 1 8.1588 -3.0252 1.5456 39 1 7.0004 -1.8118 0.9507 40 1 8.4670 -1.7501 -1.8582 41 1 9.4781 -2.1288 -0.3969 42 1 7.4929 -4.1922 -3.0427 43 1 8.7903 -3.2418 -3.8053 44 1 8.7646 -5.4990 -4.5859 45 1 9.0815 -4.7177 0.2508 46 1 7.9041 -5.4243 -0.9388 47 1 5.2706 -5.3411 5.6151 48 1 4.6289 -4.5282 7.8464 49 1 3.1631 -2.5652 8.0749 50 1 2.3387 -1.4007 6.0710 51 1 3.6455 -0.1048 4.0724 52 1 2.8309 1.0448 2.0556 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_13158394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:02:09 Heat of formation + Delta-G solvation = -85.175956 kcal Electronic energy + Delta-G solvation = -36325.167030 eV Core-core repulsion = 31557.165125 eV Total energy + Delta-G solvation = -4768.001905 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.173 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -48.98224 -41.52477 -40.52353 -39.89782 -39.46904 -37.55940 -37.24279 -35.60827 -34.32658 -33.45994 -32.00585 -30.83538 -30.51436 -28.65676 -27.13320 -26.78750 -26.40591 -24.04689 -23.47470 -23.08550 -22.58958 -21.81206 -21.31955 -20.16967 -18.80630 -18.50516 -18.23578 -17.90827 -17.51112 -17.19023 -16.92645 -16.79550 -16.67466 -16.37378 -16.14191 -15.95128 -15.77013 -15.62759 -15.48322 -15.36588 -15.28122 -14.80309 -14.69975 -14.49298 -14.31858 -14.17898 -14.04009 -13.79009 -13.66763 -13.52507 -13.38627 -13.24815 -13.19816 -12.93843 -12.50670 -12.40349 -12.26178 -12.06915 -11.86749 -11.84492 -11.70637 -11.61771 -11.35433 -11.05179 -10.83401 -10.48072 -10.24308 -10.15905 -9.96554 -9.74308 -9.23522 -5.06249 -0.10713 0.36287 0.40740 0.60298 1.26416 1.57441 1.58011 1.89735 2.03613 2.60606 2.85803 2.95640 3.07243 3.16178 3.22931 3.43935 3.45695 3.55468 3.65365 3.74013 3.84680 3.89023 3.92520 3.95254 4.01158 4.16765 4.18818 4.29119 4.32829 4.35370 4.38233 4.44487 4.50128 4.51403 4.51608 4.53529 4.60423 4.61048 4.64170 4.68770 4.81487 4.84908 4.87582 4.97071 5.00417 5.02865 5.09986 5.20352 5.29995 5.32715 5.40230 5.45935 5.52751 5.58759 5.64981 5.91563 6.05274 6.39593 6.73659 6.79074 7.14847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.067 4.067 3 Si 0.764 3.236 4 C -0.122 4.122 5 C -0.094 4.094 6 C -0.115 4.115 7 C -0.042 4.042 8 C -0.051 4.051 9 C -0.065 4.065 10 C -0.110 4.110 11 C 0.519 3.481 12 O -0.569 6.569 13 N -0.722 5.722 14 C 0.117 3.883 15 C 0.080 3.920 16 F -0.195 7.195 17 C -0.137 4.137 18 C -0.115 4.115 19 H 0.094 0.906 20 C 0.083 3.917 21 O -0.592 6.592 22 C -0.139 4.139 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.108 4.108 28 C -0.116 4.116 29 H 0.395 0.605 30 H 0.107 0.893 31 H -0.293 1.293 32 H -0.295 1.295 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.413 0.587 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.397 0.603 45 H 0.115 0.885 46 H 0.080 0.920 47 H 0.138 0.862 48 H 0.141 0.859 49 H 0.141 0.859 50 H 0.132 0.868 51 H 0.125 0.875 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -1.651 0.455 1.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.178 4.178 3 Si 0.671 3.329 4 C -0.123 4.123 5 C -0.112 4.112 6 C -0.132 4.132 7 C -0.042 4.042 8 C -0.051 4.051 9 C -0.065 4.065 10 C -0.149 4.149 11 C 0.307 3.693 12 O -0.447 6.447 13 N -0.375 5.375 14 C -0.008 4.008 15 C 0.061 3.939 16 F -0.176 7.176 17 C -0.175 4.175 18 C -0.134 4.134 19 H 0.112 0.888 20 C 0.005 3.995 21 O -0.401 6.401 22 C -0.176 4.176 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.135 4.135 27 C -0.126 4.126 28 C -0.133 4.133 29 H 0.245 0.755 30 H 0.124 0.876 31 H -0.220 1.220 32 H -0.223 1.223 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.138 0.862 36 H 0.149 0.851 37 H 0.249 0.751 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.143 0.857 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.247 0.753 45 H 0.133 0.867 46 H 0.099 0.901 47 H 0.156 0.844 48 H 0.158 0.842 49 H 0.159 0.841 50 H 0.150 0.850 51 H 0.143 0.857 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.544 -0.764 0.521 1.073 hybrid contribution -0.361 -0.664 -1.099 1.334 sum 0.183 -1.428 -0.578 1.551 Atomic orbital electron populations 1.86469 1.16971 1.82134 1.50479 1.25055 0.85400 1.10204 0.97136 0.93816 0.77860 0.76262 0.84971 1.20426 0.99768 0.95234 0.96830 1.21068 0.98630 0.93837 0.97674 1.21379 0.97893 1.00579 0.93387 1.18873 0.97908 0.93416 0.93998 1.18733 0.98350 0.95356 0.92703 1.19416 0.97284 0.95317 0.94518 1.20916 0.97672 1.01259 0.95022 1.20839 0.84044 0.83338 0.81127 1.90724 1.59777 1.36197 1.57999 1.45785 1.36360 1.40821 1.14497 1.21728 0.91193 0.95707 0.92148 1.22247 0.82929 1.00673 0.88026 1.92826 1.53111 1.97312 1.74315 1.23601 0.96099 0.96798 1.00973 1.22285 1.01584 0.96236 0.93285 0.88781 1.22110 0.96886 0.87034 0.93432 1.86404 1.70104 1.44287 1.39273 1.23634 0.97798 0.96168 1.00049 1.21222 0.99712 1.00586 0.92039 1.21487 0.97828 0.96920 0.98004 1.21388 0.97704 0.95987 0.99226 1.21381 1.00324 1.00280 0.91496 1.21263 0.99425 0.93904 0.98020 1.21069 0.98430 0.99894 0.93898 0.75491 0.87554 1.22000 1.22259 0.84781 0.84104 0.86237 0.85139 0.75105 0.88887 0.91890 0.89478 0.85722 0.92765 0.92640 0.75268 0.86694 0.90082 0.84426 0.84158 0.84118 0.85009 0.85723 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.41 12.83 -148.98 -1.91 -2.33 16 2 C -0.07 -0.04 2.80 71.23 0.20 0.15 16 3 Si 0.76 -0.11 29.79 68.60 2.04 1.93 16 4 C -0.12 -0.18 5.36 -19.83 -0.11 -0.29 16 5 C -0.09 -0.12 9.67 22.24 0.21 0.09 16 6 C -0.11 -0.13 7.82 22.48 0.18 0.04 16 7 C -0.04 -0.16 4.78 -20.05 -0.10 -0.26 16 8 C -0.05 -0.25 5.40 -20.05 -0.11 -0.36 16 9 C -0.06 -0.23 4.38 -19.65 -0.09 -0.32 16 10 C -0.11 0.08 5.31 29.10 0.15 0.24 16 11 C 0.52 2.22 7.66 87.66 0.67 2.89 16 12 O -0.57 -7.33 16.05 -3.05 -0.05 -7.38 16 13 N -0.72 0.08 5.47 -463.06 -2.53 -2.45 16 14 C 0.12 0.00 5.35 86.38 0.46 0.47 16 15 C 0.08 -0.16 1.63 -10.27 -0.02 -0.18 16 16 F -0.20 -0.37 15.07 44.97 0.68 0.31 16 17 C -0.14 0.52 7.13 31.12 0.22 0.74 16 18 C -0.12 0.22 4.20 -10.27 -0.04 0.17 16 19 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 20 C 0.08 -0.05 6.65 71.98 0.48 0.43 16 21 O -0.59 -0.80 13.66 -148.98 -2.03 -2.84 16 22 C -0.14 0.43 7.07 31.12 0.22 0.65 16 23 C -0.12 -0.30 9.66 22.24 0.21 -0.08 16 24 C -0.12 -0.25 10.04 22.31 0.22 -0.02 16 25 C -0.13 -0.29 10.03 22.24 0.22 -0.06 16 26 C -0.12 -0.45 9.62 22.48 0.22 -0.23 16 27 C -0.11 -0.44 9.62 22.48 0.22 -0.23 16 28 C -0.12 -0.20 8.65 22.24 0.19 -0.01 16 29 H 0.40 -2.79 8.70 -74.06 -0.64 -3.43 16 30 H 0.11 0.19 7.96 -2.39 -0.02 0.17 16 31 H -0.29 -1.65 7.11 99.48 0.71 -0.94 16 32 H -0.29 -1.96 7.11 99.48 0.71 -1.26 16 33 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 34 H 0.14 -0.33 7.11 -2.91 -0.02 -0.35 16 35 H 0.12 -0.40 4.83 -2.39 -0.01 -0.41 16 36 H 0.13 -0.82 8.01 -2.39 -0.02 -0.84 16 37 H 0.41 -1.70 8.23 -92.71 -0.76 -2.46 16 38 H 0.09 -0.06 7.98 -2.39 -0.02 -0.08 16 39 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.09 -0.30 8.10 -2.38 -0.02 -0.32 16 41 H 0.12 -0.85 8.10 -2.39 -0.02 -0.87 16 42 H 0.05 0.00 6.31 -2.39 -0.02 -0.02 16 43 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.40 -2.66 9.12 -74.06 -0.68 -3.33 16 45 H 0.11 -0.61 7.99 -2.39 -0.02 -0.63 16 46 H 0.08 -0.15 8.10 -2.39 -0.02 -0.17 16 47 H 0.14 -0.21 8.04 -2.91 -0.02 -0.23 16 48 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 49 H 0.14 -0.27 8.06 -2.91 -0.02 -0.29 16 50 H 0.13 0.15 8.06 -2.91 -0.02 0.13 16 51 H 0.12 0.49 8.06 -2.91 -0.02 0.47 16 52 H 0.14 -0.27 4.89 -2.91 -0.01 -0.28 16 Total: 0.00 -23.28 428.12 -1.24 -24.52 By element: Atomic # 1 Polarization: -14.56 SS G_CDS: -1.06 Total: -15.63 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 3.63 Total: 3.85 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -2.53 Total: -2.45 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -4.00 Total: -12.54 kcal Atomic # 9 Polarization: -0.37 SS G_CDS: 0.68 Total: 0.31 kcal Atomic # 14 Polarization: -0.11 SS G_CDS: 2.04 Total: 1.93 kcal Total: -23.28 -1.24 -24.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_13158394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.654 kcal (2) G-P(sol) polarization free energy of solvation -23.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds