Wall clock time and date at job start Sun Mar 7 2021 09:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50699 * 109.47152 * 119.99802 * 2 1 3 5 5 C 1.38576 * 120.32770 * 65.00219 * 4 2 1 6 6 C 1.38633 * 118.49146 * 180.02562 * 5 4 2 7 7 C 1.39263 * 119.05910 * 359.97438 * 6 5 4 8 8 C 1.48164 * 119.72329 * 180.02562 * 7 6 5 9 9 O 1.21520 * 119.99790 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00276 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99704 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46838 * 180.02562 * 11 10 8 13 13 F 1.39902 * 112.85244 * 50.32822 * 12 11 10 14 14 C 1.53778 * 113.61572 * 181.52921 * 12 11 10 15 15 C 1.53781 * 87.08139 * 139.97853 * 14 12 11 16 16 H 1.09003 * 113.61279 * 219.93334 * 15 14 12 17 17 C 1.53002 * 113.61665 * 89.11725 * 15 14 12 18 18 O 1.42897 * 109.47361 * 174.99894 * 17 15 14 19 19 C 1.53784 * 113.61392 * 279.13675 * 12 11 10 20 20 N 1.32749 * 120.55692 * 359.97438 * 7 6 5 21 21 C 1.31499 * 121.64125 * 359.74540 * 20 7 6 22 22 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 23 23 H 1.08997 * 109.47332 * 240.00042 * 2 1 3 24 24 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 25 25 H 1.48492 * 109.99800 * 181.32238 * 3 2 1 26 26 H 1.08006 * 120.75643 * 359.97438 * 5 4 2 27 27 H 1.08000 * 120.46809 * 179.97438 * 6 5 4 28 28 H 0.96990 * 119.99776 * 0.02562 * 10 8 7 29 29 H 1.09001 * 109.47224 * 299.99533 * 11 10 8 30 30 H 1.08994 * 109.47608 * 60.00229 * 11 10 8 31 31 H 1.09000 * 113.61662 * 254.52752 * 14 12 11 32 32 H 1.08993 * 113.61432 * 25.34801 * 14 12 11 33 33 H 1.08998 * 109.46768 * 295.00041 * 17 15 14 34 34 H 1.09000 * 109.47311 * 54.99895 * 17 15 14 35 35 H 0.96696 * 113.99959 * 179.97438 * 18 17 15 36 36 H 1.09006 * 113.60972 * 334.56579 * 19 12 11 37 37 H 1.08999 * 113.61820 * 105.46634 * 19 12 11 38 38 H 1.08001 * 119.55006 * 180.26512 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6881 -2.0633 1.4057 6 6 2.1672 -2.6783 2.5521 7 6 2.8729 -1.9194 3.4823 8 6 3.3921 -2.5618 4.7123 9 8 3.2018 -3.7463 4.9058 10 7 4.0754 -1.8326 5.6166 11 6 4.5892 -2.4680 6.8325 12 6 5.3199 -1.4266 7.6825 13 9 4.5640 -0.2679 7.8907 14 6 5.9324 -2.0023 8.9702 15 6 7.1480 -1.0993 8.7022 16 1 8.1032 -1.5766 8.9214 17 6 7.0246 0.2945 9.3210 18 8 8.2422 1.0148 9.1194 19 6 6.7578 -1.1480 7.2137 20 7 3.0853 -0.6254 3.2758 21 6 2.6469 -0.0182 2.1949 22 1 -0.3934 0.4416 -0.7651 23 1 1.7924 -0.5138 -0.8899 24 1 1.5613 2.4680 1.2084 25 1 3.5344 1.7705 -0.0322 26 1 1.1370 -2.6257 0.6664 27 1 1.9955 -3.7311 2.7213 28 1 4.2270 -0.8871 5.4624 29 1 3.7593 -2.8847 7.4033 30 1 5.2804 -3.2659 6.5613 31 1 5.3816 -1.7365 9.8725 32 1 6.1560 -3.0673 8.9092 33 1 6.2024 0.8308 8.8471 34 1 6.8299 0.2018 10.3894 35 1 8.2354 1.9093 9.4865 36 1 7.2089 -1.9788 6.6711 37 1 6.8724 -0.1935 6.6999 38 1 2.8426 1.0352 2.0592 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_13287726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:02:20 Heat of formation + Delta-G solvation = -98.560601 kcal Electronic energy + Delta-G solvation = -23640.901764 eV Core-core repulsion = 19786.410966 eV Total energy + Delta-G solvation = -3854.490799 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.00055 -42.01811 -40.51632 -39.79757 -37.81333 -37.27252 -35.85960 -34.04874 -33.19863 -30.50507 -28.10267 -27.12894 -26.61297 -25.20875 -23.79974 -22.86010 -21.97527 -20.28997 -19.62549 -18.64414 -18.46070 -18.26421 -17.41365 -17.19714 -16.99166 -16.76509 -16.54015 -16.24121 -15.98972 -15.51897 -15.43064 -15.30665 -15.00886 -14.86481 -14.41757 -14.24104 -14.05792 -13.97545 -13.74623 -13.53849 -13.22355 -12.55091 -12.52701 -12.15302 -11.88021 -11.80630 -11.50585 -11.37226 -11.19160 -10.95933 -10.83081 -10.63425 -10.37877 -10.20080 -4.97585 -0.74954 -0.09432 1.23352 1.36490 1.64342 1.73085 1.93496 2.47845 2.71731 2.95618 3.05283 3.14030 3.18822 3.22703 3.41946 3.44267 3.57168 3.70856 3.83017 3.84141 4.09599 4.15785 4.28966 4.32027 4.36762 4.45316 4.46869 4.51024 4.60645 4.64248 4.73103 4.81267 4.85680 4.87348 4.98029 5.10554 5.22364 5.23869 6.03492 6.38903 6.78768 6.81950 6.87151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.074 4.074 3 Si 0.771 3.229 4 C -0.108 4.108 5 C -0.048 4.048 6 C -0.108 4.108 7 C 0.057 3.943 8 C 0.573 3.427 9 O -0.557 6.557 10 N -0.703 5.703 11 C 0.109 3.891 12 C 0.075 3.925 13 F -0.197 7.197 14 C -0.129 4.129 15 C -0.114 4.114 16 H 0.097 0.903 17 C 0.082 3.918 18 O -0.593 6.593 19 C -0.145 4.145 20 N -0.466 5.466 21 C 0.081 3.919 22 H 0.409 0.591 23 H 0.111 0.889 24 H -0.294 1.294 25 H -0.284 1.284 26 H 0.176 0.824 27 H 0.161 0.839 28 H 0.416 0.584 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.397 0.603 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 2.250 -4.629 5.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.185 4.185 3 Si 0.677 3.323 4 C -0.110 4.110 5 C -0.074 4.074 6 C -0.129 4.129 7 C -0.080 4.080 8 C 0.358 3.642 9 O -0.435 6.435 10 N -0.354 5.354 11 C -0.014 4.014 12 C 0.057 3.943 13 F -0.177 7.177 14 C -0.167 4.167 15 C -0.133 4.133 16 H 0.115 0.885 17 C 0.004 3.996 18 O -0.401 6.401 19 C -0.182 4.182 20 N -0.177 5.177 21 C -0.078 4.078 22 H 0.261 0.739 23 H 0.129 0.871 24 H -0.221 1.221 25 H -0.211 1.211 26 H 0.193 0.807 27 H 0.178 0.822 28 H 0.253 0.747 29 H 0.099 0.901 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.149 0.851 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.247 0.753 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.550 1.618 -3.121 3.558 hybrid contribution -0.576 0.307 0.040 0.654 sum -0.025 1.925 -3.080 3.633 Atomic orbital electron populations 1.86435 1.16477 1.82525 1.51793 1.24718 0.86470 1.11017 0.96265 0.94046 0.77718 0.75408 0.85152 1.21033 0.97521 0.95547 0.96921 1.21861 0.95060 0.93653 0.96776 1.22397 0.94734 1.02637 0.93093 1.21150 1.00137 0.90512 0.96242 1.17960 0.77981 0.85621 0.82618 1.90791 1.59293 1.15734 1.77693 1.45700 1.54774 1.14307 1.20607 1.22014 0.99628 0.95329 0.84434 1.22329 0.90336 0.82589 0.99062 1.92829 1.77948 1.51157 1.95814 1.23580 0.95083 1.01994 0.96048 1.22319 1.00236 0.95168 0.95542 0.88477 1.22134 0.86283 0.91688 0.99486 1.86402 1.37682 1.32787 1.83274 1.23711 0.92721 1.04276 0.97537 1.67433 1.18955 1.09759 1.21541 1.22689 0.95920 0.99855 0.89384 0.73897 0.87129 1.22141 1.21074 0.80669 0.82152 0.74713 0.90127 0.87785 0.88949 0.85128 0.93098 0.92188 0.75296 0.86587 0.90809 0.82448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.40 12.82 -148.98 -1.91 0.49 16 2 C -0.07 0.34 2.81 71.24 0.20 0.54 16 3 Si 0.77 -3.91 29.87 68.60 2.05 -1.86 16 4 C -0.11 -0.23 5.40 -19.70 -0.11 -0.34 16 5 C -0.05 -0.06 9.83 22.44 0.22 0.16 16 6 C -0.11 -0.52 9.63 22.61 0.22 -0.30 16 7 C 0.06 0.48 6.75 41.89 0.28 0.77 16 8 C 0.57 5.58 7.81 86.88 0.68 6.26 16 9 O -0.56 -7.92 16.32 -3.78 -0.06 -7.98 16 10 N -0.70 -3.92 5.46 -465.66 -2.54 -6.47 16 11 C 0.11 0.18 5.35 86.38 0.46 0.64 16 12 C 0.08 0.00 1.63 -10.27 -0.02 -0.02 16 13 F -0.20 -0.95 15.08 44.97 0.68 -0.27 16 14 C -0.13 0.48 7.13 31.12 0.22 0.70 16 15 C -0.11 0.09 4.20 -10.21 -0.04 0.05 16 16 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 17 C 0.08 0.06 6.65 71.98 0.48 0.53 16 18 O -0.59 -1.64 13.66 -148.98 -2.03 -3.68 16 19 C -0.14 0.08 7.08 31.18 0.22 0.31 16 20 N -0.47 -3.95 9.54 -184.91 -1.76 -5.71 16 21 C 0.08 0.47 9.84 84.83 0.83 1.30 16 22 H 0.41 -6.04 8.74 -74.06 -0.65 -6.68 16 23 H 0.11 -1.09 7.96 -2.39 -0.02 -1.11 16 24 H -0.29 -0.83 7.06 99.48 0.70 -0.13 16 25 H -0.28 -0.14 7.11 99.48 0.71 0.57 16 26 H 0.18 -0.77 8.06 -2.91 -0.02 -0.79 16 27 H 0.16 0.50 7.64 -2.91 -0.02 0.48 16 28 H 0.42 2.14 7.56 -92.72 -0.70 1.44 16 29 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.10 -0.05 7.98 -2.39 -0.02 -0.07 16 31 H 0.09 -0.37 8.10 -2.39 -0.02 -0.39 16 32 H 0.13 -1.00 8.10 -2.39 -0.02 -1.02 16 33 H 0.05 0.10 6.31 -2.39 -0.02 0.08 16 34 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.40 -2.12 9.12 -74.06 -0.68 -2.80 16 36 H 0.12 -0.37 7.99 -2.38 -0.02 -0.39 16 37 H 0.07 0.16 8.10 -2.39 -0.02 0.14 16 38 H 0.16 0.61 4.89 -2.91 -0.01 0.60 16 Total: 0.00 -22.17 326.00 -2.80 -24.97 By element: Atomic # 1 Polarization: -9.23 SS G_CDS: -0.86 Total: -10.09 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 3.65 Total: 10.60 kcal Atomic # 7 Polarization: -7.87 SS G_CDS: -4.31 Total: -12.18 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -4.01 Total: -11.17 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.68 Total: -0.27 kcal Atomic # 14 Polarization: -3.91 SS G_CDS: 2.05 Total: -1.86 kcal Total: -22.17 -2.80 -24.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_13287726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.594 kcal (2) G-P(sol) polarization free energy of solvation -22.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds