Wall clock time and date at job start Sun Mar 7 2021 09:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34657 * 124.85076 * 2 1 4 4 C 1.36768 * 108.39686 * 180.26087 * 3 2 1 5 5 C 1.47265 * 126.94308 * 179.69666 * 4 3 2 6 6 O 1.21626 * 119.99891 * 180.02562 * 5 4 3 7 7 N 1.34770 * 119.99819 * 0.02562 * 5 4 3 8 8 C 1.46499 * 120.00106 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47400 * 180.02562 * 8 7 5 10 10 F 1.39895 * 112.85112 * 50.32513 * 9 8 7 11 11 C 1.53784 * 113.61474 * 181.52951 * 9 8 7 12 12 C 1.53779 * 87.08150 * 139.97694 * 11 9 8 13 13 H 1.09004 * 113.61428 * 220.01768 * 12 11 9 14 14 C 1.53000 * 113.61555 * 89.19732 * 12 11 9 15 15 O 1.42902 * 109.46990 * 174.99683 * 14 12 11 16 16 C 1.53782 * 113.60832 * 279.13140 * 9 8 7 17 17 C 1.46690 * 106.11411 * 359.59634 * 4 3 2 18 18 C 1.34482 * 106.33151 * 0.40025 * 17 4 3 19 19 C 1.50708 * 125.57220 * 179.75831 * 18 17 4 20 20 O 1.42904 * 109.47164 * 149.99653 * 19 18 17 21 21 Si 1.86304 * 109.46917 * 29.99525 * 19 18 17 22 22 H 1.08998 * 109.46661 * 90.03323 * 1 2 3 23 23 H 1.09004 * 109.47352 * 210.02934 * 1 2 3 24 24 H 1.08996 * 109.47278 * 330.03560 * 1 2 3 25 25 H 1.08002 * 125.79869 * 359.97438 * 3 2 1 26 26 H 0.96998 * 120.00179 * 359.97438 * 7 5 4 27 27 H 1.08999 * 109.46891 * 299.99602 * 8 7 5 28 28 H 1.09000 * 109.47135 * 59.99349 * 8 7 5 29 29 H 1.09002 * 113.60871 * 254.52384 * 11 9 8 30 30 H 1.08999 * 113.61529 * 25.42469 * 11 9 8 31 31 H 1.08997 * 109.46977 * 294.99930 * 14 12 11 32 32 H 1.09006 * 109.46866 * 55.00142 * 14 12 11 33 33 H 0.96697 * 113.99783 * 179.97438 * 15 14 12 34 34 H 1.08998 * 113.62038 * 334.56790 * 16 9 8 35 35 H 1.09003 * 113.61382 * 105.47149 * 16 9 8 36 36 H 1.07999 * 126.83431 * 180.12143 * 17 4 3 37 37 H 1.09000 * 109.47190 * 269.99908 * 19 18 17 38 38 H 0.96703 * 113.99772 * 300.00047 * 20 19 18 39 39 H 1.48500 * 109.99656 * 58.68585 * 21 19 18 40 40 H 1.48504 * 109.99682 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1051 0.0000 4 6 3.5462 0.7177 -0.0059 5 6 4.7284 1.5958 -0.0143 6 8 5.8446 1.1128 -0.0194 7 7 4.5733 2.9345 -0.0163 8 6 5.7493 3.8081 -0.0251 9 6 5.2986 5.2702 -0.0250 10 9 4.3583 5.5487 0.9726 11 6 6.4630 6.2738 -0.0716 12 6 5.6049 7.1042 -1.0407 13 1 6.1733 7.5432 -1.8607 14 6 4.6945 8.1152 -0.3408 15 8 4.0280 8.9140 -1.3204 16 6 4.8949 5.7904 -1.4147 17 6 3.5375 -0.7492 0.0002 18 6 2.2448 -1.1197 0.0002 19 6 1.7397 -2.5397 0.0003 20 8 0.4807 -2.5974 0.6739 21 14 2.9649 -3.6344 0.8787 22 1 -0.3632 -0.0006 -1.0277 23 1 -0.3634 -0.8897 0.5143 24 1 -0.3633 0.8903 0.5133 25 1 1.8767 2.1241 -0.0004 26 1 3.6831 3.3197 -0.0125 27 1 6.3526 3.6142 0.8617 28 1 6.3422 3.6103 -0.9182 29 1 6.6501 6.7699 0.8807 30 1 7.3685 5.8712 -0.5255 31 1 3.9554 7.5841 0.2591 32 1 5.2934 8.7572 0.3052 33 1 3.4324 9.5782 -0.9473 34 1 5.3709 5.2554 -2.2365 35 1 3.8179 5.8969 -1.5451 36 1 4.3981 -1.4017 -0.0002 37 1 1.6181 -2.8821 -1.0273 38 1 0.5141 -2.3063 1.5955 39 1 3.1636 -3.1588 2.2714 40 1 2.4787 -5.0376 0.8852 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_13287730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:02:23 Heat of formation + Delta-G solvation = -85.561816 kcal Electronic energy + Delta-G solvation = -24389.168057 eV Core-core repulsion = 20507.929449 eV Total energy + Delta-G solvation = -3881.238608 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.91137 -42.47457 -40.41214 -39.66788 -37.96150 -37.18258 -35.54180 -33.76915 -31.74657 -30.08460 -27.76202 -27.06793 -26.82845 -25.97872 -23.66744 -22.69693 -21.12020 -20.65576 -20.06256 -19.22683 -18.43079 -17.61419 -17.29142 -17.18678 -16.96140 -16.76670 -16.51135 -15.98484 -15.83178 -15.68366 -15.39657 -15.33022 -15.17442 -14.80603 -14.45950 -14.18791 -14.11880 -13.66548 -13.50028 -13.43601 -13.23895 -13.17484 -13.01474 -12.44058 -12.36408 -11.98331 -11.78193 -11.57193 -11.28616 -11.05252 -10.90604 -10.77687 -10.22348 -9.58131 -9.23197 -4.89321 0.70349 1.02455 1.43843 1.63507 1.80287 2.02462 2.18689 2.52839 3.02175 3.13990 3.15276 3.22904 3.30010 3.50455 3.56015 3.86582 3.91836 3.93840 4.21859 4.29182 4.39527 4.41732 4.44090 4.46150 4.51003 4.58372 4.61747 4.68339 4.71428 4.79362 4.88719 4.92209 4.94880 4.97290 5.09588 5.27457 5.37416 5.63741 5.95076 6.20233 6.31317 6.53341 6.83848 7.26543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.426 5.426 3 C 0.068 3.932 4 C -0.261 4.261 5 C 0.590 3.410 6 O -0.588 6.588 7 N -0.718 5.718 8 C 0.115 3.885 9 C 0.081 3.919 10 F -0.195 7.195 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.093 0.907 14 C 0.083 3.917 15 O -0.593 6.593 16 C -0.141 4.141 17 C -0.153 4.153 18 C -0.023 4.023 19 C -0.044 4.044 20 O -0.539 6.539 21 Si 0.775 3.225 22 H 0.079 0.921 23 H 0.112 0.888 24 H 0.102 0.898 25 H 0.201 0.799 26 H 0.410 0.590 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.397 0.603 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.158 0.842 37 H 0.133 0.867 38 H 0.388 0.612 39 H -0.295 1.295 40 H -0.288 1.288 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 3.147 -0.476 4.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.100 5.100 3 C -0.070 4.070 4 C -0.271 4.271 5 C 0.380 3.620 6 O -0.470 6.470 7 N -0.370 5.370 8 C -0.009 4.009 9 C 0.063 3.937 10 F -0.175 7.175 11 C -0.173 4.173 12 C -0.135 4.135 13 H 0.111 0.889 14 C 0.005 3.995 15 O -0.402 6.402 16 C -0.179 4.179 17 C -0.177 4.177 18 C -0.132 4.132 19 C -0.153 4.153 20 O -0.347 6.347 21 Si 0.679 3.321 22 H 0.098 0.902 23 H 0.130 0.870 24 H 0.121 0.879 25 H 0.218 0.782 26 H 0.246 0.754 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.144 0.856 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.247 0.753 34 H 0.132 0.868 35 H 0.099 0.901 36 H 0.175 0.825 37 H 0.151 0.849 38 H 0.238 0.762 39 H -0.221 1.221 40 H -0.215 1.215 Dipole moment (debyes) X Y Z Total from point charges -3.016 1.661 -0.758 3.525 hybrid contribution -1.524 1.129 1.263 2.279 sum -4.540 2.790 0.505 5.353 Atomic orbital electron populations 1.22741 0.74663 1.07004 1.04988 1.43730 1.08034 1.04612 1.53622 1.22357 0.89291 0.93093 1.02214 1.20312 0.92040 0.94112 1.20678 1.17632 0.87950 0.81777 0.74603 1.90754 1.27457 1.76013 1.52732 1.45562 1.10391 1.05143 1.75928 1.21797 0.88580 0.86604 1.03954 1.22234 0.90017 0.93883 0.87604 1.92820 1.66866 1.94569 1.63246 1.23590 0.97207 0.95030 1.01426 1.22329 0.97211 0.94415 0.99547 0.88896 1.22124 0.94939 0.92429 0.89973 1.86408 1.63723 1.53027 1.37035 1.23682 1.02631 0.96186 0.95381 1.21821 0.95650 0.93329 1.06871 1.20848 0.90450 0.89799 1.12135 1.24765 0.92479 0.93954 1.04152 1.86537 1.29630 1.88596 1.29929 0.93296 0.84444 0.74548 0.79791 0.90191 0.86993 0.87906 0.78227 0.75361 0.91183 0.88828 0.89173 0.85644 0.92655 0.92524 0.75303 0.86834 0.90145 0.82489 0.84913 0.76230 1.22117 1.21464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.33 10.71 127.77 1.37 1.03 16 2 N -0.43 0.72 3.09 -533.23 -1.65 -0.93 16 3 C 0.07 -0.10 10.83 83.92 0.91 0.81 16 4 C -0.26 -1.32 6.29 -19.04 -0.12 -1.44 16 5 C 0.59 4.87 7.81 86.62 0.68 5.54 16 6 O -0.59 -9.70 16.97 -4.11 -0.07 -9.77 16 7 N -0.72 -1.08 5.46 -466.54 -2.55 -3.63 16 8 C 0.11 0.02 5.35 86.38 0.46 0.49 16 9 C 0.08 -0.20 1.63 -10.27 -0.02 -0.22 16 10 F -0.19 -0.16 15.08 44.97 0.68 0.51 16 11 C -0.13 0.62 7.13 31.12 0.22 0.85 16 12 C -0.12 0.28 4.20 -10.21 -0.04 0.24 16 13 H 0.09 -0.14 8.14 -2.38 -0.02 -0.16 16 14 C 0.08 -0.11 6.66 71.98 0.48 0.37 16 15 O -0.59 -0.48 13.66 -148.98 -2.04 -2.52 16 16 C -0.14 0.46 7.08 31.18 0.22 0.69 16 17 C -0.15 -0.70 9.49 23.62 0.22 -0.48 16 18 C -0.02 -0.02 6.14 40.98 0.25 0.23 16 19 C -0.04 0.09 2.98 71.24 0.21 0.30 16 20 O -0.54 1.23 9.95 -148.98 -1.48 -0.25 16 21 Si 0.78 -0.73 31.12 68.60 2.13 1.41 16 22 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 23 H 0.11 -0.82 4.94 -2.39 -0.01 -0.83 16 24 H 0.10 -1.16 8.13 -2.39 -0.02 -1.18 16 25 H 0.20 -1.76 7.45 -2.91 -0.02 -1.79 16 26 H 0.41 -1.31 7.18 -92.71 -0.67 -1.97 16 27 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.09 -0.03 7.98 -2.39 -0.02 -0.05 16 29 H 0.09 -0.43 8.10 -2.39 -0.02 -0.45 16 30 H 0.13 -0.95 8.10 -2.39 -0.02 -0.97 16 31 H 0.06 -0.06 6.32 -2.39 -0.02 -0.08 16 32 H 0.06 -0.17 8.14 -2.38 -0.02 -0.19 16 33 H 0.40 -2.91 9.12 -74.06 -0.68 -3.58 16 34 H 0.11 -0.57 7.99 -2.39 -0.02 -0.59 16 35 H 0.08 -0.17 8.10 -2.39 -0.02 -0.19 16 36 H 0.16 0.53 6.89 -2.91 -0.02 0.51 16 37 H 0.13 -0.52 7.96 -2.39 -0.02 -0.53 16 38 H 0.39 -2.69 8.38 -74.06 -0.62 -3.32 16 39 H -0.29 -1.58 7.11 99.48 0.71 -0.88 16 40 H -0.29 -1.38 7.11 99.48 0.71 -0.67 16 Total: 0.00 -23.19 335.05 -0.95 -24.14 By element: Atomic # 1 Polarization: -16.55 SS G_CDS: -0.83 Total: -17.38 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 4.85 Total: 8.41 kcal Atomic # 7 Polarization: -0.36 SS G_CDS: -4.19 Total: -4.56 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -3.59 Total: -12.54 kcal Atomic # 9 Polarization: -0.16 SS G_CDS: 0.68 Total: 0.51 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: 2.13 Total: 1.41 kcal Total: -23.19 -0.95 -24.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_13287730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.423 kcal (2) G-P(sol) polarization free energy of solvation -23.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds