Wall clock time and date at job start Sun Mar 7 2021 09:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47204 * 2 1 4 4 C 1.50698 * 109.47265 * 119.99878 * 2 1 3 5 5 C 1.34847 * 125.90330 * 217.29355 * 4 2 1 6 6 C 1.40939 * 107.46984 * 179.97438 * 5 4 2 7 7 C 1.34850 * 107.47037 * 0.02562 * 6 5 4 8 8 N 1.36573 * 125.89522 * 36.98285 * 4 2 1 9 9 C 1.40196 * 125.67101 * 0.02562 * 8 4 2 10 10 C 1.38828 * 120.06158 * 235.49872 * 9 8 4 11 11 C 1.38125 * 119.92909 * 179.69936 * 10 9 8 12 12 C 1.38278 * 120.06573 * 0.59856 * 11 10 9 13 13 C 1.50704 * 119.93361 * 179.69785 * 12 11 10 14 14 C 1.50698 * 109.47451 * 269.97584 * 13 12 11 15 15 O 1.21284 * 119.99716 * 0.02562 * 14 13 12 16 16 N 1.34769 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46504 * 119.99944 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47185 * 179.97438 * 17 16 14 19 19 F 1.39901 * 112.85206 * 314.66357 * 18 17 16 20 20 C 1.53788 * 113.61661 * 85.85944 * 18 17 16 21 21 C 1.54048 * 86.98660 * 89.16256 * 20 18 17 22 22 H 1.08997 * 113.61163 * 270.88667 * 21 20 18 23 23 C 1.52998 * 113.69656 * 139.99216 * 21 20 18 24 24 O 1.42896 * 109.47132 * 87.46868 * 23 21 20 25 25 C 1.53778 * 113.61909 * 183.46551 * 18 17 16 26 26 C 1.38283 * 120.13341 * 359.67858 * 12 11 10 27 27 C 1.38119 * 120.06027 * 0.02562 * 26 12 11 28 28 H 0.96700 * 114.00218 * 305.50958 * 1 2 3 29 29 H 1.09006 * 109.47392 * 239.99858 * 2 1 3 30 30 H 1.48505 * 109.99918 * 299.99728 * 3 2 1 31 31 H 1.48493 * 110.00311 * 61.31947 * 3 2 1 32 32 H 1.08007 * 126.26459 * 359.94108 * 5 4 2 33 33 H 1.08005 * 126.26615 * 180.02562 * 6 5 4 34 34 H 1.07999 * 125.89708 * 180.02562 * 7 6 5 35 35 H 1.07992 * 120.04012 * 359.97438 * 10 9 8 36 36 H 1.08001 * 119.96912 * 180.30047 * 11 10 9 37 37 H 1.08997 * 109.47300 * 29.98556 * 13 12 11 38 38 H 1.09002 * 109.46726 * 149.98039 * 13 12 11 39 39 H 0.96996 * 120.00024 * 359.97438 * 16 14 13 40 40 H 1.09004 * 109.46835 * 299.99447 * 17 16 14 41 41 H 1.08996 * 109.47811 * 59.99670 * 17 16 14 42 42 H 1.08998 * 113.61456 * 203.67097 * 20 18 17 43 43 H 1.09000 * 113.61236 * 334.56440 * 20 18 17 44 44 H 1.08999 * 109.46907 * 207.46774 * 23 21 20 45 45 H 1.09003 * 109.47048 * 327.46778 * 23 21 20 46 46 H 0.96703 * 113.99906 * 180.02562 * 24 23 21 47 47 H 1.09005 * 113.61267 * 25.43133 * 25 18 17 48 48 H 1.08992 * 113.61671 * 156.33090 * 25 18 17 49 49 H 1.07994 * 119.97067 * 180.02562 * 26 12 11 50 50 H 1.07996 * 120.03176 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 3.0142 -0.3651 1.9561 6 6 3.1253 -1.2880 3.0156 7 6 2.1066 -2.1637 2.8981 8 7 1.3650 -1.8115 1.8066 9 6 0.2159 -2.4729 1.3511 10 6 -0.8631 -2.6602 2.2044 11 6 -1.9963 -3.3066 1.7509 12 6 -2.0520 -3.7779 0.4521 13 6 -3.2873 -4.4888 -0.0376 14 6 -3.1541 -5.9667 0.2255 15 8 -2.1545 -6.3999 0.7586 16 7 -4.1455 -6.8068 -0.1317 17 6 -4.0161 -8.2434 0.1246 18 6 -5.2702 -8.9652 -0.3726 19 9 -6.4532 -8.3185 0.0008 20 6 -5.2161 -9.3379 -1.8637 21 6 -4.5629 -10.6624 -1.4254 22 1 -3.4761 -10.6122 -1.3589 23 6 -5.0545 -11.8799 -2.2108 24 8 -4.2620 -12.0383 -3.3892 25 6 -5.2721 -10.4737 -0.0739 26 6 -0.9767 -3.5979 -0.3985 27 6 0.1568 -2.9468 0.0476 28 1 -0.3933 0.5131 0.7191 29 1 1.7924 -0.5139 -0.8900 30 1 1.5615 2.4679 -1.2086 31 1 1.5879 2.4586 1.2242 32 1 3.6756 0.4661 1.7609 33 1 3.8869 -1.2929 3.7813 34 1 1.9083 -2.9965 3.5566 35 1 -0.8181 -2.2970 3.2204 36 1 -2.8379 -3.4484 2.4127 37 1 -4.1608 -4.1034 0.4882 38 1 -3.4037 -4.3194 -1.1081 39 1 -4.9450 -6.4602 -0.5577 40 1 -3.1423 -8.6289 -0.4007 41 1 -3.9004 -8.4127 1.1951 42 1 -6.1987 -9.4649 -2.3179 43 1 -4.5573 -8.6975 -2.4502 44 1 -4.9661 -12.7720 -1.5908 45 1 -6.0977 -11.7343 -2.4913 46 1 -4.5184 -12.7927 -3.9372 47 1 -4.6584 -10.7498 0.7835 48 1 -6.2700 -10.9107 -0.0397 49 1 -1.0232 -3.9666 -1.4125 50 1 0.9962 -2.8061 -0.6172 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_13287746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:02:29 Heat of formation + Delta-G solvation = -55.017412 kcal Electronic energy + Delta-G solvation = -33394.944261 eV Core-core repulsion = 28691.050359 eV Total energy + Delta-G solvation = -4703.893903 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.168 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -48.77700 -42.68989 -41.15586 -40.17693 -39.55618 -37.84924 -37.26263 -35.57407 -34.88724 -32.19428 -32.03262 -31.07276 -30.10045 -28.14853 -27.09764 -26.52370 -26.05933 -24.00312 -23.37532 -22.83714 -21.58482 -21.41896 -20.65077 -20.26789 -19.31647 -18.39165 -18.27261 -17.84409 -17.55785 -17.21707 -16.97825 -16.68320 -16.61415 -16.26022 -15.95369 -15.83973 -15.79494 -15.65994 -15.30473 -14.96782 -14.81739 -14.67392 -14.55979 -14.39139 -14.34051 -14.17671 -13.95294 -13.85759 -13.45930 -13.35016 -13.21566 -12.96934 -12.83436 -12.66566 -12.37276 -12.34351 -12.15173 -12.14305 -11.88640 -11.56455 -11.38087 -11.12580 -10.93764 -10.85633 -10.28089 -10.26355 -10.03825 -9.25150 -9.08506 -4.90423 -0.02902 0.30706 1.05412 1.36459 1.53031 1.65858 1.82475 1.96308 1.99383 2.10667 2.65267 2.98792 3.09397 3.21998 3.25767 3.26270 3.44112 3.56499 3.66772 3.71985 3.84274 3.88458 3.92816 4.12469 4.18574 4.24181 4.27924 4.33427 4.35040 4.46433 4.48797 4.51070 4.51742 4.57101 4.59273 4.62334 4.64183 4.65198 4.70463 4.81117 4.88822 4.92234 4.99045 5.16256 5.18254 5.24554 5.25649 5.30210 5.34747 5.45372 5.75112 5.93157 6.18265 6.37255 6.37747 6.48501 6.85744 7.11592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.062 4.062 3 Si 0.803 3.197 4 C -0.025 4.025 5 C -0.194 4.194 6 C -0.198 4.198 7 C -0.024 4.024 8 N -0.399 5.399 9 C 0.118 3.882 10 C -0.126 4.126 11 C -0.097 4.097 12 C -0.068 4.068 13 C -0.097 4.097 14 C 0.516 3.484 15 O -0.575 6.575 16 N -0.720 5.720 17 C 0.121 3.879 18 C 0.081 3.919 19 F -0.205 7.205 20 C -0.141 4.141 21 C -0.110 4.110 22 H 0.097 0.903 23 C 0.084 3.916 24 O -0.597 6.597 25 C -0.136 4.136 26 C -0.097 4.097 27 C -0.106 4.106 28 H 0.379 0.621 29 H 0.120 0.880 30 H -0.292 1.292 31 H -0.290 1.290 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.170 0.830 35 H 0.131 0.869 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.417 0.583 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.398 0.602 47 H 0.094 0.906 48 H 0.111 0.889 49 H 0.140 0.860 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 -2.092 -2.230 4.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.170 4.170 3 Si 0.705 3.295 4 C -0.134 4.134 5 C -0.218 4.218 6 C -0.222 4.222 7 C -0.152 4.152 8 N -0.072 5.072 9 C 0.028 3.972 10 C -0.145 4.145 11 C -0.115 4.115 12 C -0.068 4.068 13 C -0.136 4.136 14 C 0.304 3.696 15 O -0.454 6.454 16 N -0.374 5.374 17 C -0.004 4.004 18 C 0.062 3.938 19 F -0.186 7.186 20 C -0.179 4.179 21 C -0.129 4.129 22 H 0.115 0.885 23 C 0.006 3.994 24 O -0.406 6.406 25 C -0.174 4.174 26 C -0.115 4.115 27 C -0.125 4.125 28 H 0.227 0.773 29 H 0.138 0.862 30 H -0.220 1.220 31 H -0.216 1.216 32 H 0.188 0.812 33 H 0.174 0.826 34 H 0.187 0.813 35 H 0.149 0.851 36 H 0.162 0.838 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.254 0.746 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.121 0.879 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.247 0.753 47 H 0.113 0.887 48 H 0.130 0.870 49 H 0.158 0.842 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.917 -1.574 -2.225 3.992 hybrid contribution -1.647 -0.695 0.383 1.828 sum -4.565 -2.269 -1.842 5.420 Atomic orbital electron populations 1.86590 1.18184 1.74762 1.55008 1.25048 0.83633 1.12215 0.96151 0.93357 0.90166 0.69584 0.76355 1.21318 0.98908 0.92535 1.00629 1.21047 0.99459 1.03735 0.97554 1.21227 1.01125 0.97694 1.02190 1.22320 0.95763 1.03818 0.93280 1.41570 1.20324 1.22374 1.22966 1.17761 0.86592 0.98383 0.94475 1.21132 0.92362 1.01041 0.99982 1.21084 0.97971 0.97022 0.95464 1.19546 0.95589 0.97714 0.93994 1.20745 0.97781 0.88992 1.06116 1.20978 0.82054 0.89409 0.77135 1.90754 1.31448 1.79289 1.43940 1.45776 1.21792 1.06862 1.62936 1.21559 0.96271 0.80714 1.01840 1.22594 0.80955 0.92546 0.97680 1.92845 1.49049 1.83746 1.92913 1.23756 1.03064 0.97236 0.93853 1.22411 1.00831 0.94421 0.95229 0.88488 1.22191 0.93946 0.97062 0.86156 1.86435 1.61238 1.55224 1.37701 1.23602 1.03592 0.92060 0.98157 1.21064 0.92142 0.97750 1.00583 1.20987 0.99112 0.97887 0.94534 0.77328 0.86194 1.21985 1.21648 0.81218 0.82559 0.81260 0.85146 0.83828 0.84936 0.84977 0.74637 0.89530 0.90803 0.87859 0.89977 0.92196 0.92218 0.75251 0.88711 0.87039 0.84186 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.50 10.87 -148.98 -1.62 -4.12 16 2 C -0.06 -0.14 2.50 71.24 0.18 0.04 16 3 Si 0.80 -0.55 30.82 68.60 2.11 1.57 16 4 C -0.02 -0.13 6.12 41.04 0.25 0.12 16 5 C -0.19 -0.69 9.40 22.15 0.21 -0.48 16 6 C -0.20 -0.93 10.86 22.15 0.24 -0.69 16 7 C -0.02 -0.16 11.21 83.18 0.93 0.78 16 8 N -0.40 -2.96 2.84 -333.41 -0.95 -3.90 16 9 C 0.12 0.87 4.67 38.08 0.18 1.05 16 10 C -0.13 -0.69 9.76 22.38 0.22 -0.48 16 11 C -0.10 -0.32 9.69 22.25 0.22 -0.10 16 12 C -0.07 -0.17 4.38 -19.84 -0.09 -0.26 16 13 C -0.10 0.35 5.83 29.10 0.17 0.52 16 14 C 0.52 1.22 7.82 87.66 0.69 1.91 16 15 O -0.58 -6.92 16.03 -3.04 -0.05 -6.97 16 16 N -0.72 1.27 5.45 -463.07 -2.53 -1.26 16 17 C 0.12 -0.08 5.26 86.38 0.45 0.37 16 18 C 0.08 -0.23 1.88 -10.27 -0.02 -0.25 16 19 F -0.21 -0.13 16.67 44.97 0.75 0.62 16 20 C -0.14 0.52 7.09 31.21 0.22 0.74 16 21 C -0.11 0.39 3.66 -10.18 -0.04 0.35 16 22 H 0.10 -0.15 7.69 -2.39 -0.02 -0.16 16 23 C 0.08 -0.35 6.89 71.98 0.50 0.15 16 24 O -0.60 0.35 13.66 -148.98 -2.03 -1.68 16 25 C -0.14 0.68 7.13 31.12 0.22 0.90 16 26 C -0.10 -0.42 9.69 22.25 0.22 -0.20 16 27 C -0.11 -0.73 8.49 22.38 0.19 -0.54 16 28 H 0.38 0.41 8.60 -74.06 -0.64 -0.22 16 29 H 0.12 0.11 7.96 -2.38 -0.02 0.09 16 30 H -0.29 -1.56 7.11 99.48 0.71 -0.85 16 31 H -0.29 -1.38 7.11 99.48 0.71 -0.67 16 32 H 0.17 -0.40 6.62 -2.91 -0.02 -0.42 16 33 H 0.16 0.13 8.06 -2.91 -0.02 0.10 16 34 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 35 H 0.13 0.49 8.06 -2.91 -0.02 0.47 16 36 H 0.14 -0.12 8.06 -2.91 -0.02 -0.15 16 37 H 0.13 -1.13 8.08 -2.39 -0.02 -1.15 16 38 H 0.13 -1.12 8.08 -2.39 -0.02 -1.14 16 39 H 0.42 -2.60 8.08 -92.71 -0.75 -3.35 16 40 H 0.09 0.03 7.37 -2.38 -0.02 0.02 16 41 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.10 -0.46 7.91 -2.39 -0.02 -0.47 16 43 H 0.08 -0.25 8.10 -2.39 -0.02 -0.27 16 44 H 0.06 -0.36 8.14 -2.39 -0.02 -0.38 16 45 H 0.06 -0.37 7.85 -2.39 -0.02 -0.39 16 46 H 0.40 -3.48 9.12 -74.06 -0.68 -4.15 16 47 H 0.09 -0.56 8.10 -2.38 -0.02 -0.58 16 48 H 0.11 -0.72 8.10 -2.39 -0.02 -0.74 16 49 H 0.14 0.08 8.06 -2.91 -0.02 0.06 16 50 H 0.12 0.79 8.06 -2.91 -0.02 0.76 16 Total: 0.00 -24.37 419.19 -0.41 -24.78 By element: Atomic # 1 Polarization: -11.91 SS G_CDS: -1.04 Total: -12.95 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 4.93 Total: 3.92 kcal Atomic # 7 Polarization: -1.69 SS G_CDS: -3.47 Total: -5.16 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -3.70 Total: -12.78 kcal Atomic # 9 Polarization: -0.13 SS G_CDS: 0.75 Total: 0.62 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: 2.11 Total: 1.57 kcal Total: -24.37 -0.41 -24.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_13287746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.234 kcal (2) G-P(sol) polarization free energy of solvation -24.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds