Wall clock time and date at job start Sun Mar 7 2021 09:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.38503 * 119.80771 * 119.99642 * 4 2 1 6 6 C 1.37830 * 120.30447 * 179.97438 * 5 4 2 7 7 C 1.39664 * 119.90431 * 0.02562 * 6 5 4 8 8 C 1.47542 * 120.19081 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00516 * 180.02562 * 8 7 6 10 10 N 1.34781 * 119.99682 * 0.02562 * 8 7 6 11 11 C 1.46502 * 119.99648 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47048 * 179.97438 * 11 10 8 13 13 F 1.39904 * 112.84774 * 316.19274 * 12 11 10 14 14 C 1.53781 * 113.61768 * 87.50242 * 12 11 10 15 15 C 1.53780 * 87.08100 * 89.11672 * 14 12 11 16 16 H 1.09002 * 113.61460 * 270.88291 * 15 14 12 17 17 C 1.53001 * 113.61322 * 139.98607 * 15 14 12 18 18 O 1.42900 * 109.47448 * 87.49741 * 17 15 14 19 19 C 1.53780 * 87.08328 * 25.43462 * 15 14 12 20 20 C 1.40170 * 119.62182 * 0.02562 * 7 6 5 21 21 O 1.35656 * 120.15557 * 179.97438 * 20 7 6 22 22 C 1.38097 * 119.80594 * 299.73189 * 4 2 1 23 23 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 24 24 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 25 25 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 26 26 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 27 27 H 1.08005 * 119.85105 * 0.02562 * 5 4 2 28 28 H 1.07997 * 120.05138 * 180.02562 * 6 5 4 29 29 H 0.96991 * 120.00443 * 359.97438 * 10 8 7 30 30 H 1.09005 * 109.47084 * 299.99582 * 11 10 8 31 31 H 1.08998 * 109.47420 * 59.99566 * 11 10 8 32 32 H 1.09000 * 113.61597 * 203.67129 * 14 12 11 33 33 H 1.09000 * 113.60958 * 334.56268 * 14 12 11 34 34 H 1.09001 * 109.47230 * 207.50535 * 17 15 14 35 35 H 1.09003 * 109.46893 * 327.50115 * 17 15 14 36 36 H 0.96704 * 113.99811 * 179.97438 * 18 17 15 37 37 H 1.08999 * 113.61710 * 220.01899 * 19 15 14 38 38 H 1.09004 * 113.61313 * 89.11488 * 19 15 14 39 39 H 0.96692 * 113.99788 * 89.99627 * 21 20 7 40 40 H 1.07999 * 119.95920 * 359.96914 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7272 -0.0333 -2.1396 6 6 3.1926 -0.6731 -3.2682 7 6 2.8604 -2.0101 -3.4976 8 6 3.3556 -2.7014 -4.7033 9 8 3.0639 -3.8653 -4.8999 10 7 4.1314 -2.0426 -5.5869 11 6 4.6236 -2.7292 -6.7839 12 6 5.4733 -1.7637 -7.6125 13 9 4.8979 -0.4935 -7.7256 14 6 6.9544 -1.7365 -7.1995 15 6 7.1746 -2.8781 -8.2060 16 1 7.0344 -3.8707 -7.7779 17 6 8.4752 -2.7512 -9.0018 18 8 9.5399 -3.3696 -8.2766 19 6 5.9398 -2.3504 -8.9553 20 6 2.0537 -2.6916 -2.5758 21 8 1.7240 -3.9902 -2.7881 22 6 1.5997 -2.0341 -1.4424 23 1 -0.3934 0.4418 -0.7650 24 1 1.7923 -0.5138 0.8899 25 1 1.5616 2.4678 1.2086 26 1 3.5346 1.7703 -0.0322 27 1 2.9851 1.0005 -1.9630 28 1 3.8133 -0.1414 -3.9742 29 1 4.3638 -1.1141 -5.4304 30 1 5.2300 -3.5854 -6.4882 31 1 3.7778 -3.0716 -7.3801 32 1 7.4659 -0.8123 -7.4686 33 1 7.1241 -2.0290 -6.1633 34 1 8.3596 -3.2430 -9.9677 35 1 8.7052 -1.6969 -9.1562 36 1 10.3966 -3.3272 -8.7231 37 1 5.2905 -3.1385 -9.3366 38 1 6.1740 -1.5940 -9.7045 39 1 2.3493 -4.6220 -2.4077 40 1 0.9826 -2.5567 -0.7266 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_13422076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:02:42 Heat of formation + Delta-G solvation = -154.066615 kcal Electronic energy + Delta-G solvation = -25761.570294 eV Core-core repulsion = 21651.416293 eV Total energy + Delta-G solvation = -4110.154001 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.75975 -41.69960 -40.38399 -39.72077 -38.46662 -37.23538 -37.15711 -35.59688 -32.95713 -31.14054 -30.06633 -27.90882 -27.06664 -26.53754 -23.92488 -23.43443 -22.82762 -21.64669 -20.45964 -19.45198 -18.79380 -18.27671 -18.21437 -17.78732 -17.16833 -16.82806 -16.59604 -16.51631 -16.25167 -16.20416 -15.83674 -15.62738 -15.59762 -15.18424 -14.90441 -14.75953 -14.38828 -14.32330 -13.84746 -13.83841 -13.43704 -13.25380 -12.90705 -12.79393 -12.36081 -12.31952 -12.19359 -12.12831 -11.71189 -11.54022 -11.35105 -11.03668 -10.83262 -10.54592 -10.37032 -10.06354 -9.80528 -4.97739 -0.45846 0.11686 1.28301 1.61285 1.67802 1.86806 1.98820 2.52432 2.99979 3.08761 3.10080 3.23236 3.25189 3.41308 3.47336 3.52624 3.65853 3.76134 3.91060 4.04881 4.23973 4.25565 4.35187 4.36676 4.38465 4.50098 4.57248 4.59901 4.66299 4.67814 4.72315 4.73493 4.90932 4.99139 5.00324 5.09736 5.19898 5.21316 5.32561 5.56537 6.30896 6.68137 6.72455 6.87920 7.02713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.084 4.084 3 Si 0.786 3.214 4 C -0.071 4.071 5 C -0.131 4.131 6 C -0.054 4.054 7 C -0.181 4.181 8 C 0.558 3.442 9 O -0.560 6.560 10 N -0.714 5.714 11 C 0.121 3.879 12 C 0.080 3.920 13 F -0.204 7.204 14 C -0.142 4.142 15 C -0.110 4.110 16 H 0.097 0.903 17 C 0.084 3.916 18 O -0.597 6.597 19 C -0.135 4.135 20 C 0.155 3.845 21 O -0.497 6.497 22 C -0.139 4.139 23 H 0.397 0.603 24 H 0.112 0.888 25 H -0.302 1.302 26 H -0.274 1.274 27 H 0.163 0.837 28 H 0.163 0.837 29 H 0.414 0.586 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.397 0.603 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.407 0.593 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 5.518 -3.335 7.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.193 4.193 3 Si 0.691 3.309 4 C -0.072 4.072 5 C -0.148 4.148 6 C -0.072 4.072 7 C -0.185 4.185 8 C 0.346 3.654 9 O -0.439 6.439 10 N -0.368 5.368 11 C -0.003 4.003 12 C 0.062 3.938 13 F -0.184 7.184 14 C -0.179 4.179 15 C -0.129 4.129 16 H 0.116 0.884 17 C 0.006 3.994 18 O -0.406 6.406 19 C -0.173 4.173 20 C 0.109 3.891 21 O -0.310 6.310 22 C -0.157 4.157 23 H 0.247 0.753 24 H 0.130 0.870 25 H -0.230 1.230 26 H -0.201 1.201 27 H 0.180 0.820 28 H 0.180 0.820 29 H 0.252 0.748 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.247 0.753 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.267 0.733 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.969 5.095 -2.421 6.897 hybrid contribution 0.752 -0.635 0.179 1.000 sum 4.721 4.461 -2.242 6.871 Atomic orbital electron populations 1.86497 1.17074 1.82226 1.50541 1.25422 0.85490 1.11638 0.96777 0.93574 0.78086 0.74248 0.85013 1.20590 0.96168 0.93642 0.96765 1.21231 0.98592 1.01090 0.93909 1.21466 0.96884 0.91559 0.97323 1.20390 1.03939 0.96829 0.97313 1.18300 0.77974 0.85950 0.83137 1.90816 1.58359 1.17842 1.76919 1.45634 1.51889 1.16526 1.22769 1.21634 0.98279 0.94813 0.85612 1.22590 0.92638 0.79367 0.99218 1.92845 1.86808 1.41916 1.96846 1.23724 0.92594 1.00409 1.01184 1.22366 0.93997 0.99385 0.97120 0.88437 1.22196 0.85988 0.97159 0.94011 1.86436 1.21531 1.81502 1.51141 1.23609 0.96392 1.01938 0.95347 1.18728 0.92699 0.85713 0.92003 1.84719 1.52567 1.13342 1.80393 1.21345 1.01919 0.95550 0.96906 0.75302 0.87045 1.23033 1.20052 0.81969 0.81974 0.74806 0.89117 0.90540 0.87668 0.90073 0.92208 0.92173 0.75270 0.88663 0.86904 0.73294 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.43 12.77 -148.98 -1.90 -1.47 16 2 C -0.08 0.22 2.81 71.24 0.20 0.42 16 3 Si 0.79 -4.18 29.77 68.60 2.04 -2.14 16 4 C -0.07 0.12 5.39 -19.83 -0.11 0.01 16 5 C -0.13 0.64 8.64 22.24 0.19 0.83 16 6 C -0.05 0.19 9.54 22.52 0.21 0.41 16 7 C -0.18 -0.61 5.89 -20.01 -0.12 -0.73 16 8 C 0.56 3.71 7.76 86.70 0.67 4.38 16 9 O -0.56 -8.13 15.16 16.92 0.26 -7.88 16 10 N -0.71 -0.38 5.40 -466.25 -2.52 -2.90 16 11 C 0.12 0.00 5.26 86.38 0.45 0.45 16 12 C 0.08 -0.24 1.91 -10.27 -0.02 -0.26 16 13 F -0.20 -0.04 16.61 44.97 0.75 0.71 16 14 C -0.14 0.57 7.06 31.12 0.22 0.79 16 15 C -0.11 0.43 3.66 -10.27 -0.04 0.40 16 16 H 0.10 -0.19 7.72 -2.39 -0.02 -0.21 16 17 C 0.08 -0.39 6.88 71.98 0.50 0.11 16 18 O -0.60 0.58 13.66 -148.98 -2.04 -1.45 16 19 C -0.13 0.73 7.13 31.12 0.22 0.95 16 20 C 0.15 0.86 6.72 22.84 0.15 1.01 16 21 O -0.50 -4.12 11.58 -68.81 -0.80 -4.92 16 22 C -0.14 -0.34 9.53 22.34 0.21 -0.13 16 23 H 0.40 -3.48 8.70 -74.05 -0.64 -4.12 16 24 H 0.11 -0.18 7.96 -2.39 -0.02 -0.19 16 25 H -0.30 -0.94 7.11 99.48 0.71 -0.23 16 26 H -0.27 0.57 7.11 99.48 0.71 1.27 16 27 H 0.16 -1.70 4.85 -2.91 -0.01 -1.71 16 28 H 0.16 -1.60 6.40 -2.91 -0.02 -1.62 16 29 H 0.41 -1.77 6.06 -92.72 -0.56 -2.33 16 30 H 0.09 0.04 7.39 -2.38 -0.02 0.02 16 31 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.10 -0.54 7.90 -2.39 -0.02 -0.55 16 33 H 0.08 -0.26 8.10 -2.39 -0.02 -0.28 16 34 H 0.06 -0.38 8.14 -2.39 -0.02 -0.40 16 35 H 0.06 -0.41 7.84 -2.39 -0.02 -0.43 16 36 H 0.40 -3.62 9.12 -74.05 -0.68 -4.29 16 37 H 0.09 -0.60 8.10 -2.39 -0.02 -0.62 16 38 H 0.11 -0.79 8.10 -2.39 -0.02 -0.81 16 39 H 0.41 0.51 9.06 -74.06 -0.67 -0.16 16 40 H 0.14 0.37 8.06 -2.91 -0.02 0.35 16 Total: 0.00 -24.76 338.98 -2.83 -27.59 By element: Atomic # 1 Polarization: -14.81 SS G_CDS: -1.38 Total: -16.20 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 2.76 Total: 8.65 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -2.52 Total: -2.90 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -4.48 Total: -15.71 kcal Atomic # 9 Polarization: -0.04 SS G_CDS: 0.75 Total: 0.71 kcal Atomic # 14 Polarization: -4.18 SS G_CDS: 2.04 Total: -2.14 kcal Total: -24.76 -2.83 -27.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_13422076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.475 kcal (2) G-P(sol) polarization free energy of solvation -24.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds