Wall clock time and date at job start Sun Mar 7 2021 09:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37786 * 119.84944 * 2 1 4 4 C 1.39715 * 119.90655 * 180.02562 * 3 2 1 5 5 C 1.47529 * 120.18975 * 179.97438 * 4 3 2 6 6 O 1.21584 * 120.00468 * 179.97438 * 5 4 3 7 7 N 1.34783 * 120.00046 * 0.02562 * 5 4 3 8 8 C 1.46496 * 119.99918 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.46976 * 179.97438 * 8 7 5 10 10 F 1.39901 * 112.84953 * 48.80220 * 9 8 7 11 11 C 1.53787 * 113.61178 * 179.97438 * 9 8 7 12 12 C 1.53784 * 87.07923 * 140.06478 * 11 9 8 13 13 H 1.09004 * 113.61162 * 220.01809 * 12 11 9 14 14 C 1.52998 * 113.61395 * 89.11282 * 12 11 9 15 15 O 1.42900 * 109.47052 * 174.99711 * 14 12 11 16 16 C 1.53779 * 87.08045 * 334.56667 * 12 11 9 17 17 C 1.40136 * 119.61605 * 0.25534 * 4 3 2 18 18 O 1.35652 * 120.14755 * 179.72564 * 17 4 3 19 19 C 1.38713 * 119.70082 * 359.49030 * 17 4 3 20 20 C 1.50699 * 119.95749 * 180.27697 * 19 17 4 21 21 O 1.42899 * 109.47269 * 75.23402 * 20 19 17 22 22 Si 1.86294 * 109.47124 * 195.23608 * 20 19 17 23 23 C 1.38052 * 120.08131 * 0.50998 * 19 17 4 24 24 H 1.08998 * 109.46699 * 90.00416 * 1 2 3 25 25 H 1.09008 * 109.47171 * 209.99902 * 1 2 3 26 26 H 1.09000 * 109.47184 * 330.00158 * 1 2 3 27 27 H 1.07994 * 120.04613 * 0.04509 * 3 2 1 28 28 H 0.96997 * 119.99730 * 359.97438 * 7 5 4 29 29 H 1.08995 * 109.47662 * 59.99806 * 8 7 5 30 30 H 1.09006 * 109.47270 * 299.99364 * 8 7 5 31 31 H 1.09004 * 113.61202 * 254.61231 * 11 9 8 32 32 H 1.08994 * 113.61447 * 25.51662 * 11 9 8 33 33 H 1.08997 * 109.47537 * 295.00205 * 14 12 11 34 34 H 1.09002 * 109.46990 * 55.00028 * 14 12 11 35 35 H 0.96703 * 114.00488 * 179.97438 * 15 14 12 36 36 H 1.09006 * 113.61307 * 270.88660 * 16 12 11 37 37 H 1.09007 * 113.61642 * 139.98417 * 16 12 11 38 38 H 0.96701 * 114.00787 * 89.99501 * 18 17 4 39 39 H 1.09005 * 109.46877 * 315.23329 * 20 19 17 40 40 H 0.96699 * 113.99920 * 179.97438 * 21 20 19 41 41 H 1.48496 * 110.00210 * 178.68150 * 22 20 19 42 42 H 1.48507 * 109.99937 * 299.99881 * 22 20 19 43 43 H 1.07997 * 119.80093 * 179.76162 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5900 1.1965 -0.0005 5 6 4.3306 2.4724 -0.0011 6 8 5.5464 2.4697 -0.0011 7 7 3.6594 3.6412 -0.0006 8 6 4.3948 4.9082 -0.0017 9 6 3.4032 6.0734 -0.0015 10 9 2.4052 5.9373 0.9694 11 6 4.0772 7.4558 -0.0020 12 6 2.9839 7.9013 -0.9875 13 1 3.3517 8.5467 -1.7851 14 6 1.7311 8.4534 -0.3044 15 8 0.8264 8.9459 -1.2949 16 6 2.8616 6.4242 -1.3974 17 6 4.2837 -0.0211 -0.0065 18 8 5.6402 -0.0323 -0.0127 19 6 3.5771 -1.2148 -0.0011 20 6 4.3173 -2.5274 -0.0012 21 8 4.8555 -2.7709 1.3000 22 14 3.1443 -3.9017 -0.4551 23 6 2.1966 -1.2017 -0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8901 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6511 2.1293 0.0007 28 1 2.6894 3.6434 -0.0002 29 1 5.0206 4.9643 -0.8924 30 1 5.0226 4.9647 0.8876 31 1 4.0307 7.9645 0.9609 32 1 5.0784 7.4532 -0.4326 33 1 1.2486 7.6599 0.2660 34 1 2.0113 9.2649 0.3673 35 1 0.0077 9.3117 -0.9328 36 1 3.5307 6.1396 -2.2095 37 1 1.8338 6.1000 -1.5610 38 1 6.0376 -0.0375 0.8688 39 1 5.1284 -2.4871 -0.7282 40 1 5.3459 -3.6010 1.3738 41 1 3.8691 -5.1974 -0.4898 42 1 2.0337 -3.9672 0.5286 43 1 1.6511 -2.1337 -0.0002 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_13422088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:02:45 Heat of formation + Delta-G solvation = -154.229657 kcal Electronic energy + Delta-G solvation = -28136.400447 eV Core-core repulsion = 23870.701757 eV Total energy + Delta-G solvation = -4265.698690 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.141 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.95135 -41.76266 -40.25960 -39.67599 -38.09334 -37.76089 -37.18656 -35.66851 -33.29376 -32.98514 -30.16975 -27.58921 -27.20582 -26.97550 -26.75043 -24.77058 -22.85888 -21.85064 -21.54474 -20.13480 -19.62403 -18.79974 -18.56812 -18.28963 -17.86935 -17.11463 -16.96195 -16.86537 -16.58043 -16.17428 -15.96109 -15.84546 -15.41655 -15.35010 -15.24653 -15.05031 -14.65163 -14.49128 -14.21033 -14.10105 -13.82632 -13.69051 -13.48009 -13.21532 -13.18593 -13.00299 -12.55188 -12.47668 -12.45063 -11.88671 -11.80496 -11.78939 -11.56634 -11.31761 -10.99368 -10.79054 -10.50022 -10.38436 -10.08548 -9.53600 -4.95613 -0.39080 0.03331 1.23635 1.55652 1.65026 1.86030 1.92260 2.48129 2.99543 3.09674 3.14735 3.15995 3.24028 3.27002 3.47603 3.53308 3.64474 3.80333 3.89293 4.08435 4.12470 4.20217 4.29677 4.36895 4.42237 4.49260 4.55628 4.56530 4.58412 4.65379 4.69233 4.78541 4.86136 4.88149 4.91812 4.95048 5.05050 5.15115 5.19371 5.21020 5.29519 5.38750 5.63534 6.31001 6.52044 6.64772 6.83894 7.03522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.094 4.094 3 C -0.063 4.063 4 C -0.180 4.180 5 C 0.559 3.441 6 O -0.559 6.559 7 N -0.715 5.715 8 C 0.114 3.886 9 C 0.080 3.920 10 F -0.193 7.193 11 C -0.134 4.134 12 C -0.116 4.116 13 H 0.093 0.907 14 C 0.083 3.917 15 O -0.593 6.593 16 C -0.142 4.142 17 C 0.164 3.836 18 O -0.489 6.489 19 C -0.116 4.116 20 C -0.088 4.088 21 O -0.556 6.556 22 Si 0.775 3.225 23 C -0.079 4.079 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.156 0.844 28 H 0.412 0.588 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.397 0.603 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.401 0.599 39 H 0.080 0.920 40 H 0.395 0.605 41 H -0.285 1.285 42 H -0.279 1.279 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 0.707 -1.216 5.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.094 4.094 3 C -0.081 4.081 4 C -0.184 4.184 5 C 0.347 3.653 6 O -0.439 6.439 7 N -0.368 5.368 8 C -0.010 4.010 9 C 0.062 3.938 10 F -0.174 7.174 11 C -0.172 4.172 12 C -0.135 4.135 13 H 0.111 0.889 14 C 0.005 3.995 15 O -0.402 6.402 16 C -0.180 4.180 17 C 0.117 3.883 18 O -0.301 6.301 19 C -0.117 4.117 20 C -0.195 4.195 21 O -0.366 6.366 22 Si 0.678 3.322 23 C -0.097 4.097 24 H 0.110 0.890 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.173 0.827 28 H 0.249 0.751 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.143 0.857 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.247 0.753 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.260 0.740 39 H 0.098 0.902 40 H 0.246 0.754 41 H -0.212 1.212 42 H -0.206 1.206 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.958 0.368 -1.811 5.291 hybrid contribution 0.480 -0.107 1.944 2.005 sum -4.477 0.262 0.133 4.487 Atomic orbital electron populations 1.20924 0.87917 1.04295 1.04200 1.20106 0.98202 0.91609 0.99450 1.21396 0.91110 0.99713 0.95893 1.20368 0.94983 0.92527 1.10493 1.18240 0.86873 0.84129 0.76038 1.90805 1.14646 1.87869 1.50540 1.45664 1.11069 1.04810 1.75244 1.21857 0.94095 0.80905 1.04147 1.22245 0.87064 0.96080 0.88432 1.92825 1.62842 1.96719 1.64997 1.23595 0.99889 0.92288 1.01454 1.22294 0.95005 0.96775 0.99390 0.88851 1.22120 0.89685 0.97831 0.89822 1.86407 1.33973 1.82800 1.37008 1.23671 1.03446 0.95686 0.95185 1.18490 0.83692 0.90688 0.95444 1.84636 1.15128 1.96057 1.34292 1.19744 0.94091 0.93526 1.04303 1.25029 1.04571 1.01989 0.87936 1.86500 1.74074 1.45903 1.30151 0.93897 0.77263 0.73390 0.87642 1.21371 0.92297 0.99668 0.96355 0.89004 0.90518 0.89982 0.82658 0.75075 0.88725 0.90837 0.89097 0.85679 0.92602 0.92515 0.75264 0.86838 0.90017 0.73956 0.90176 0.75427 1.21240 1.20603 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.85 10.00 71.24 0.71 1.56 16 2 C -0.09 0.15 5.87 -19.90 -0.12 0.04 16 3 C -0.06 0.03 9.18 22.52 0.21 0.24 16 4 C -0.18 -1.06 5.89 -20.01 -0.12 -1.17 16 5 C 0.56 4.55 7.76 86.69 0.67 5.23 16 6 O -0.56 -8.74 15.16 16.94 0.26 -8.48 16 7 N -0.71 -1.07 5.42 -466.27 -2.53 -3.60 16 8 C 0.11 -0.01 5.37 86.38 0.46 0.46 16 9 C 0.08 -0.22 1.66 -10.26 -0.02 -0.23 16 10 F -0.19 -0.11 15.01 44.97 0.67 0.57 16 11 C -0.13 0.65 7.13 31.12 0.22 0.87 16 12 C -0.12 0.29 4.20 -10.27 -0.04 0.25 16 13 H 0.09 -0.16 8.14 -2.39 -0.02 -0.17 16 14 C 0.08 -0.13 6.65 71.98 0.48 0.35 16 15 O -0.59 -0.41 13.66 -148.98 -2.03 -2.44 16 16 C -0.14 0.48 7.07 31.12 0.22 0.70 16 17 C 0.16 1.32 6.69 22.84 0.15 1.47 16 18 O -0.49 -5.11 10.90 -68.75 -0.75 -5.86 16 19 C -0.12 -0.51 5.30 -19.80 -0.10 -0.62 16 20 C -0.09 -0.17 2.37 71.24 0.17 0.00 16 21 O -0.56 -1.86 12.86 -148.98 -1.92 -3.77 16 22 Si 0.77 -1.69 30.19 68.60 2.07 0.38 16 23 C -0.08 -0.04 8.30 22.30 0.19 0.15 16 24 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 25 H 0.08 -0.59 8.08 -2.38 -0.02 -0.61 16 26 H 0.08 -0.73 8.08 -2.39 -0.02 -0.75 16 27 H 0.16 -1.00 6.40 -2.91 -0.02 -1.01 16 28 H 0.41 -1.17 6.22 -92.71 -0.58 -1.75 16 29 H 0.09 -0.05 7.95 -2.39 -0.02 -0.06 16 30 H 0.07 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.09 -0.46 8.10 -2.39 -0.02 -0.47 16 32 H 0.12 -0.96 8.10 -2.39 -0.02 -0.98 16 33 H 0.06 -0.07 6.31 -2.39 -0.02 -0.09 16 34 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.40 -2.96 9.12 -74.06 -0.68 -3.63 16 36 H 0.11 -0.58 7.97 -2.38 -0.02 -0.60 16 37 H 0.08 -0.18 8.10 -2.38 -0.02 -0.20 16 38 H 0.40 2.52 9.06 -74.06 -0.67 1.85 16 39 H 0.08 0.13 7.82 -2.38 -0.02 0.12 16 40 H 0.40 -1.75 8.74 -74.06 -0.65 -2.40 16 41 H -0.29 -0.62 7.11 99.48 0.71 0.09 16 42 H -0.28 -0.58 6.74 99.48 0.67 0.09 16 43 H 0.15 -0.46 4.87 -2.91 -0.01 -0.47 16 Total: 0.00 -23.34 357.98 -2.61 -25.95 By element: Atomic # 1 Polarization: -10.55 SS G_CDS: -1.47 Total: -12.03 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 3.08 Total: 9.29 kcal Atomic # 7 Polarization: -1.07 SS G_CDS: -2.53 Total: -3.60 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -4.44 Total: -20.56 kcal Atomic # 9 Polarization: -0.11 SS G_CDS: 0.67 Total: 0.57 kcal Atomic # 14 Polarization: -1.69 SS G_CDS: 2.07 Total: 0.38 kcal Total: -23.34 -2.61 -25.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_13422088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.284 kcal (2) G-P(sol) polarization free energy of solvation -23.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds