Wall clock time and date at job start Sun Mar 7 2021 09:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37875 * 126.45513 * 2 1 4 4 C 1.46673 * 126.23420 * 0.03517 * 3 2 1 5 5 O 1.21694 * 120.00341 * 359.97438 * 4 3 2 6 6 N 1.34786 * 120.00085 * 179.97438 * 4 3 2 7 7 C 1.46488 * 119.99973 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.46994 * 179.97438 * 7 6 4 9 9 F 1.39896 * 112.84793 * 314.66819 * 8 7 6 10 10 C 1.53781 * 113.61152 * 85.86565 * 8 7 6 11 11 C 1.54049 * 86.98555 * 89.16256 * 10 8 7 12 12 H 1.09001 * 113.68991 * 270.86917 * 11 10 8 13 13 C 1.53008 * 113.61938 * 139.98007 * 11 10 8 14 14 O 1.42903 * 109.47070 * 87.50109 * 13 11 10 15 15 C 1.53775 * 87.08003 * 25.42873 * 11 10 8 16 16 N 1.37654 * 107.53127 * 179.97438 * 3 2 1 17 17 C 1.35532 * 108.64667 * 359.97438 * 16 3 2 18 18 C 1.50695 * 125.56506 * 179.97438 * 17 16 3 19 19 O 1.42898 * 109.46955 * 120.03099 * 18 17 16 20 20 Si 1.86300 * 109.47389 * 0.03008 * 18 17 16 21 21 C 1.35459 * 108.86923 * 0.24534 * 17 16 3 22 22 H 1.09005 * 109.46961 * 89.99973 * 1 2 3 23 23 H 1.08999 * 109.47091 * 210.00361 * 1 2 3 24 24 H 1.09001 * 109.47572 * 330.00418 * 1 2 3 25 25 H 0.97003 * 119.99506 * 359.97438 * 6 4 3 26 26 H 1.09000 * 109.47556 * 299.99837 * 7 6 4 27 27 H 1.09000 * 109.47530 * 59.99623 * 7 6 4 28 28 H 1.09004 * 113.61021 * 203.66228 * 10 8 7 29 29 H 1.08997 * 113.61440 * 334.56832 * 10 8 7 30 30 H 1.08999 * 109.47059 * 207.50297 * 13 11 10 31 31 H 1.08998 * 109.46762 * 327.50091 * 13 11 10 32 32 H 0.96706 * 113.99456 * 180.02562 * 14 13 11 33 33 H 1.09005 * 113.61512 * 220.02128 * 15 11 10 34 34 H 1.09003 * 113.69212 * 89.13123 * 15 11 10 35 35 H 0.97005 * 125.67459 * 179.97438 * 16 3 2 36 36 H 1.09001 * 109.47545 * 240.02642 * 18 17 16 37 37 H 0.96700 * 113.99995 * 299.99800 * 19 18 17 38 38 H 1.48498 * 109.99998 * 179.97438 * 20 18 17 39 39 H 1.48498 * 109.99919 * 301.31690 * 20 18 17 40 40 H 1.07998 * 126.06440 * 179.71813 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3262 1.1090 0.0000 4 6 1.8898 2.5093 0.0007 5 8 0.7026 2.7766 0.0009 6 7 2.8036 3.5000 0.0012 7 6 2.3677 4.8985 0.0013 8 6 3.5932 5.8147 0.0025 9 9 4.5703 5.4137 0.9199 10 6 4.1483 6.1026 -1.4025 11 6 3.1844 7.3034 -1.4486 12 1 2.1993 7.0592 -1.8461 13 6 3.7913 8.5524 -2.0910 14 8 3.5857 8.5088 -3.5045 15 6 3.2443 7.3100 0.0880 16 7 3.6284 0.6625 0.0006 17 6 3.6218 -0.6928 0.0015 18 6 4.8434 -1.5752 0.0018 19 8 4.8349 -2.3998 1.1688 20 14 6.3753 -0.5150 0.0017 21 6 2.3379 -1.1247 -0.0039 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 3.7500 3.2869 0.0014 26 1 1.7693 5.0928 -0.8888 27 1 1.7688 5.0924 0.8911 28 1 5.2006 6.3870 -1.4063 29 1 3.9160 5.3261 -2.1313 30 1 3.3117 9.4413 -1.6813 31 1 4.8602 8.5864 -1.8803 32 1 3.9461 9.2710 -3.9781 33 1 2.2826 7.5076 0.5616 34 1 4.0493 7.9237 0.4923 35 1 4.4191 1.2245 0.0004 36 1 4.8371 -2.2048 -0.8879 37 1 4.8399 -1.9054 1.9999 38 1 7.5870 -1.3735 0.0026 39 1 6.3803 0.3701 -1.1907 40 1 2.0137 -2.1548 -0.0090 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_13940406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:00 Heat of formation + Delta-G solvation = -99.704058 kcal Electronic energy + Delta-G solvation = -24525.416165 eV Core-core repulsion = 20643.564303 eV Total energy + Delta-G solvation = -3881.851861 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.77814 -42.67142 -40.62488 -39.83669 -37.73239 -37.25896 -35.79392 -33.68800 -31.73605 -30.01260 -28.40172 -27.68625 -27.06196 -26.07966 -22.92413 -22.55113 -21.65819 -20.82693 -20.15157 -19.60461 -18.27401 -17.92515 -17.77835 -17.09079 -16.97296 -16.61989 -16.55357 -16.10502 -15.97444 -15.68768 -15.16366 -14.96607 -14.91685 -14.85316 -14.23995 -14.16293 -14.02291 -13.82766 -13.61005 -13.47040 -13.39778 -13.00001 -12.82327 -12.58509 -12.37165 -12.23657 -12.14450 -11.56722 -11.38168 -11.18855 -10.84643 -10.57511 -10.42860 -9.85890 -9.23739 -5.17345 0.21708 1.10477 1.42133 1.55138 1.74973 1.83665 1.98374 2.18512 2.98767 3.06803 3.21209 3.25258 3.39318 3.44765 3.66151 3.72683 3.89267 4.10277 4.21215 4.25828 4.34028 4.36119 4.40245 4.50796 4.58633 4.64285 4.66658 4.68916 4.70886 4.81901 4.86100 4.88699 4.96615 5.08901 5.15186 5.30997 5.33562 5.58998 5.80843 6.18634 6.34749 6.68605 6.86565 6.94434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.086 4.086 3 C -0.065 4.065 4 C 0.592 3.408 5 O -0.556 6.556 6 N -0.720 5.720 7 C 0.121 3.879 8 C 0.080 3.920 9 F -0.203 7.203 10 C -0.145 4.145 11 C -0.110 4.110 12 H 0.098 0.902 13 C 0.083 3.917 14 O -0.598 6.598 15 C -0.133 4.133 16 N -0.521 5.521 17 C 0.031 3.969 18 C -0.045 4.045 19 O -0.546 6.546 20 Si 0.760 3.240 21 C -0.190 4.190 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.408 0.592 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.397 0.603 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.424 0.576 36 H 0.127 0.873 37 H 0.397 0.603 38 H -0.284 1.284 39 H -0.271 1.271 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 4.548 1.298 6.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.178 4.178 4 C 0.380 3.620 5 O -0.435 6.435 6 N -0.372 5.372 7 C -0.003 4.003 8 C 0.061 3.939 9 F -0.184 7.184 10 C -0.182 4.182 11 C -0.129 4.129 12 H 0.116 0.884 13 C 0.006 3.994 14 O -0.406 6.406 15 C -0.171 4.171 16 N -0.123 5.123 17 C -0.087 4.087 18 C -0.155 4.155 19 O -0.353 6.353 20 Si 0.663 3.337 21 C -0.214 4.214 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.244 0.756 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.247 0.753 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.266 0.734 36 H 0.144 0.856 37 H 0.248 0.752 38 H -0.210 1.210 39 H -0.197 1.197 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.647 4.087 0.631 6.220 hybrid contribution 0.634 0.174 -0.480 0.814 sum 5.280 4.261 0.150 6.787 Atomic orbital electron populations 1.20332 0.89198 1.02904 1.02243 1.20230 0.96338 0.91307 1.01623 1.19995 0.84307 0.92866 1.20606 1.17105 0.85449 0.83503 0.75898 1.90830 1.17291 1.83664 1.51670 1.45600 1.10007 1.05803 1.75825 1.21676 0.95092 0.78982 1.04534 1.22605 0.86641 0.95602 0.89048 1.92844 1.64163 1.92336 1.69039 1.23788 1.01169 0.98961 0.94321 1.22419 1.00162 0.95088 0.95190 0.88368 1.22205 0.99453 0.97018 0.80729 1.86440 1.83560 1.50608 1.20032 1.23586 1.05154 0.92692 0.95627 1.41924 1.06836 1.06415 1.57127 1.21057 0.97859 0.82740 1.07029 1.24754 1.00920 0.97618 0.92251 1.86528 1.96744 1.35852 1.16136 0.94369 0.73823 0.79885 0.85631 1.20763 0.91120 0.99095 1.10433 0.91539 0.90543 0.91652 0.75612 0.88985 0.89832 0.87733 0.90341 0.92094 0.92248 0.75286 0.88381 0.86898 0.73395 0.85604 0.75238 1.21050 1.19718 0.83217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 9.83 71.23 0.70 0.14 16 2 C -0.09 -0.55 6.21 -19.57 -0.12 -0.67 16 3 C -0.07 -0.29 7.06 40.35 0.28 -0.01 16 4 C 0.59 3.70 7.79 86.44 0.67 4.37 16 5 O -0.56 -7.30 14.80 -4.33 -0.06 -7.36 16 6 N -0.72 -0.01 5.45 -467.09 -2.55 -2.56 16 7 C 0.12 -0.12 5.26 86.38 0.45 0.33 16 8 C 0.08 -0.29 1.88 -10.27 -0.02 -0.31 16 9 F -0.20 0.15 16.67 44.97 0.75 0.90 16 10 C -0.14 0.59 7.09 31.21 0.22 0.81 16 11 C -0.11 0.47 3.66 -10.18 -0.04 0.43 16 12 H 0.10 -0.22 7.70 -2.39 -0.02 -0.24 16 13 C 0.08 -0.39 6.89 71.98 0.50 0.10 16 14 O -0.60 0.55 13.66 -148.98 -2.04 -1.49 16 15 C -0.13 0.82 7.12 31.12 0.22 1.04 16 16 N -0.52 0.91 5.47 -171.93 -0.94 -0.03 16 17 C 0.03 -0.01 6.11 41.34 0.25 0.24 16 18 C -0.04 0.15 2.98 71.23 0.21 0.36 16 19 O -0.55 1.23 12.87 -148.98 -1.92 -0.69 16 20 Si 0.76 -4.70 30.96 68.60 2.12 -2.57 16 21 C -0.19 -0.67 10.64 22.01 0.23 -0.44 16 22 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 23 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 24 H 0.06 0.63 6.48 -2.39 -0.02 0.61 16 25 H 0.41 -1.83 7.21 -92.71 -0.67 -2.50 16 26 H 0.09 -0.03 7.37 -2.39 -0.02 -0.05 16 27 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 28 H 0.10 -0.53 7.90 -2.38 -0.02 -0.55 16 29 H 0.08 -0.22 8.10 -2.39 -0.02 -0.24 16 30 H 0.06 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.06 -0.41 7.85 -2.39 -0.02 -0.43 16 32 H 0.40 -3.57 9.12 -74.05 -0.68 -4.25 16 33 H 0.10 -0.73 8.10 -2.38 -0.02 -0.75 16 34 H 0.11 -0.87 8.10 -2.39 -0.02 -0.89 16 35 H 0.42 -3.22 5.98 -92.70 -0.55 -3.77 16 36 H 0.13 -0.36 7.96 -2.39 -0.02 -0.38 16 37 H 0.40 -3.95 8.70 -74.06 -0.64 -4.59 16 38 H -0.28 -0.39 7.11 99.48 0.71 0.31 16 39 H -0.27 0.73 7.11 99.48 0.71 1.43 16 40 H 0.15 0.35 8.06 -2.91 -0.02 0.33 16 Total: 0.00 -20.74 337.82 -2.45 -23.19 By element: Atomic # 1 Polarization: -14.39 SS G_CDS: -1.39 Total: -15.78 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 3.57 Total: 6.40 kcal Atomic # 7 Polarization: 0.90 SS G_CDS: -3.49 Total: -2.59 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -4.02 Total: -9.54 kcal Atomic # 9 Polarization: 0.15 SS G_CDS: 0.75 Total: 0.90 kcal Atomic # 14 Polarization: -4.70 SS G_CDS: 2.12 Total: -2.57 kcal Total: -20.74 -2.45 -23.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_13940406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.513 kcal (2) G-P(sol) polarization free energy of solvation -20.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds