Wall clock time and date at job start Sun Mar 7 2021 09:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.47161 * 2 1 4 4 C 1.50698 * 109.47547 * 239.99744 * 2 1 3 5 5 C 1.31114 * 118.54810 * 120.00013 * 4 2 1 6 6 N 1.38914 * 121.84775 * 179.33975 * 5 4 2 7 7 C 1.47029 * 118.88711 * 13.29277 * 6 5 4 8 8 C 1.50704 * 109.82305 * 196.79799 * 7 6 5 9 9 O 1.21283 * 119.99837 * 20.00136 * 8 7 6 10 10 N 1.34774 * 120.00054 * 199.99773 * 8 7 6 11 11 C 1.46502 * 120.00123 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46906 * 179.97438 * 11 10 8 13 13 F 1.39894 * 112.85369 * 316.19235 * 12 11 10 14 14 C 1.53781 * 113.61439 * 87.50461 * 12 11 10 15 15 C 1.53785 * 87.08158 * 89.11219 * 14 12 11 16 16 H 1.09003 * 113.61355 * 270.88759 * 15 14 12 17 17 C 1.53004 * 113.69057 * 139.99390 * 15 14 12 18 18 O 1.42893 * 109.47185 * 87.46409 * 17 15 14 19 19 C 1.53777 * 87.08184 * 25.43241 * 15 14 12 20 20 C 1.53548 * 107.65691 * 316.33482 * 7 6 5 21 21 C 1.50204 * 118.54519 * 299.73841 * 4 2 1 22 22 H 0.96693 * 113.99530 * 59.99912 * 1 2 3 23 23 H 1.09004 * 109.46745 * 119.99514 * 2 1 3 24 24 H 1.48502 * 110.00024 * 59.99946 * 3 2 1 25 25 H 1.48499 * 110.00288 * 181.31468 * 3 2 1 26 26 H 1.08000 * 119.07057 * 359.31408 * 5 4 2 27 27 H 0.97000 * 120.55802 * 193.31501 * 6 5 4 28 28 H 1.08997 * 109.82592 * 75.93992 * 7 6 5 29 29 H 0.97007 * 120.00176 * 359.97438 * 10 8 7 30 30 H 1.09002 * 109.46907 * 300.00249 * 11 10 8 31 31 H 1.08997 * 109.46622 * 60.00218 * 11 10 8 32 32 H 1.08996 * 113.61643 * 203.65907 * 14 12 11 33 33 H 1.09003 * 113.61418 * 334.56578 * 14 12 11 34 34 H 1.08996 * 109.46795 * 207.46662 * 17 15 14 35 35 H 1.09006 * 109.46806 * 327.46108 * 17 15 14 36 36 H 0.96703 * 114.00118 * 179.97438 * 18 17 15 37 37 H 1.08993 * 113.61906 * 220.01733 * 19 15 14 38 38 H 1.09007 * 113.69084 * 89.12650 * 19 15 14 39 39 H 1.09005 * 109.62020 * 180.66778 * 20 7 6 40 40 H 1.08997 * 109.62282 * 301.04066 * 20 7 6 41 41 H 1.09007 * 109.33032 * 320.58738 * 21 4 2 42 42 H 1.09002 * 109.33414 * 80.06601 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9315 -0.7104 -1.2304 5 6 2.6833 -0.0461 -2.0744 6 7 3.1945 -0.6371 -3.2230 7 6 2.6551 -1.9351 -3.6542 8 6 3.5959 -2.5771 -4.6410 9 8 4.7545 -2.2225 -4.6932 10 7 3.1497 -3.5455 -5.4655 11 6 4.0644 -4.1700 -6.4244 12 6 3.3116 -5.2295 -7.2315 13 9 2.4825 -6.0295 -6.4380 14 6 2.6162 -4.6707 -8.4841 15 6 3.9263 -4.9493 -9.2397 16 1 4.6307 -4.1179 -9.2135 17 6 3.7166 -5.5064 -10.6492 18 8 3.5747 -4.4250 -11.5725 19 6 4.2121 -6.0320 -8.1856 20 6 2.5233 -2.8220 -2.4077 21 6 1.5537 -2.1501 -1.4325 22 1 -0.3932 0.4417 -0.7650 23 1 1.7923 -0.5138 0.8901 24 1 1.5615 2.4679 1.2085 25 1 3.5346 1.7703 -0.0320 26 1 2.9112 0.9899 -1.8712 27 1 3.8957 -0.2009 -3.7318 28 1 1.6769 -1.7946 -4.1140 29 1 2.2231 -3.8294 -5.4234 30 1 4.4576 -3.4098 -7.0994 31 1 4.8881 -4.6402 -5.8873 32 1 1.7777 -5.2778 -8.8255 33 1 2.3710 -3.6111 -8.4114 34 1 4.5762 -6.1144 -10.9311 35 1 2.8159 -6.1201 -10.6670 36 1 3.4386 -4.7049 -12.4881 37 1 5.2551 -6.0714 -7.8718 38 1 3.8105 -7.0118 -8.4442 39 1 2.1358 -3.7999 -2.6935 40 1 3.4993 -2.9384 -1.9365 41 1 1.5873 -2.6698 -0.4749 42 1 0.5420 -2.2047 -1.8344 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_15413834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:06 Heat of formation + Delta-G solvation = -123.598196 kcal Electronic energy + Delta-G solvation = -24900.265156 eV Core-core repulsion = 20990.065689 eV Total energy + Delta-G solvation = -3910.199467 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.76788 -41.46912 -40.19953 -39.44511 -37.40348 -37.20172 -35.69743 -33.19812 -33.11215 -30.18788 -27.99710 -27.06720 -26.47185 -25.27196 -23.67797 -22.85272 -21.78759 -20.39048 -19.35719 -19.13319 -18.27127 -18.07324 -17.73239 -17.16617 -16.91554 -16.65436 -16.28365 -16.18941 -15.88799 -15.67966 -15.58951 -15.21553 -15.03786 -14.85338 -14.54109 -14.32290 -14.08885 -14.03539 -13.81358 -13.38558 -13.02955 -12.94383 -12.81649 -12.36607 -12.21850 -12.13865 -11.96172 -11.87997 -11.54525 -11.35880 -11.27285 -10.99327 -10.83558 -10.35160 -10.15843 -8.46651 -5.00203 1.27781 1.37786 1.44999 1.62045 1.75364 2.00011 2.59325 2.99435 3.08990 3.23079 3.23888 3.44740 3.51666 3.66536 3.80012 3.86047 3.91038 4.00614 4.24752 4.30462 4.34101 4.36508 4.42808 4.50412 4.58303 4.60369 4.64666 4.66076 4.67127 4.72208 4.74831 4.90518 4.97858 5.00149 5.16616 5.21629 5.28783 5.32057 5.55266 6.16835 6.35139 6.79171 6.87476 6.95543 6.97298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.047 4.047 3 Si 0.761 3.239 4 C -0.287 4.287 5 C 0.141 3.859 6 N -0.737 5.737 7 C 0.141 3.859 8 C 0.515 3.485 9 O -0.570 6.570 10 N -0.712 5.712 11 C 0.120 3.880 12 C 0.080 3.920 13 F -0.205 7.205 14 C -0.141 4.141 15 C -0.110 4.110 16 H 0.099 0.901 17 C 0.083 3.917 18 O -0.597 6.597 19 C -0.136 4.136 20 C -0.124 4.124 21 C -0.049 4.049 22 H 0.392 0.608 23 H 0.089 0.911 24 H -0.307 1.307 25 H -0.294 1.294 26 H 0.145 0.855 27 H 0.408 0.592 28 H 0.118 0.882 29 H 0.418 0.582 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 -2.162 -6.796 7.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.158 4.158 3 Si 0.670 3.330 4 C -0.298 4.298 5 C 0.021 3.979 6 N -0.370 5.370 7 C 0.032 3.968 8 C 0.301 3.699 9 O -0.449 6.449 10 N -0.365 5.365 11 C -0.004 4.004 12 C 0.062 3.938 13 F -0.185 7.185 14 C -0.179 4.179 15 C -0.128 4.128 16 H 0.117 0.883 17 C 0.006 3.994 18 O -0.406 6.406 19 C -0.174 4.174 20 C -0.162 4.162 21 C -0.087 4.087 22 H 0.242 0.758 23 H 0.107 0.893 24 H -0.235 1.235 25 H -0.222 1.222 26 H 0.161 0.839 27 H 0.244 0.756 28 H 0.135 0.865 29 H 0.255 0.745 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.247 0.753 37 H 0.113 0.887 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.531 -1.435 -5.366 5.761 hybrid contribution 0.133 -0.969 -0.139 0.988 sum -1.399 -2.403 -5.504 6.167 Atomic orbital electron populations 1.86428 1.18031 1.82097 1.50461 1.24763 0.84805 1.08869 0.97380 0.94194 0.77364 0.76506 0.84929 1.20995 1.11610 0.97671 0.99505 1.20488 0.94897 0.96096 0.86428 1.44361 1.43829 1.20620 1.28151 1.21078 0.96431 0.85278 0.93973 1.20896 0.88466 0.79521 0.80972 1.90732 1.19907 1.63689 1.70583 1.45689 1.15206 1.38478 1.37119 1.21636 0.92429 0.94733 0.91619 1.22593 0.91832 0.90977 0.88413 1.92847 1.73657 1.75130 1.76867 1.23716 0.98193 1.03074 0.92912 1.22366 0.98094 0.99266 0.93091 0.88307 1.22195 1.00658 0.88473 0.88077 1.86431 1.96101 1.35535 1.22501 1.23610 1.01341 0.99096 0.93391 1.21848 1.00643 0.98913 0.94834 1.19902 0.98598 0.91557 0.98607 0.75809 0.89305 1.23538 1.22151 0.83855 0.75585 0.86476 0.74515 0.88992 0.90554 0.87891 0.89855 0.92256 0.92281 0.75260 0.88679 0.87107 0.88574 0.92810 0.91850 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.80 12.79 -148.98 -1.91 -2.71 16 2 C -0.05 -0.06 2.83 71.24 0.20 0.15 16 3 Si 0.76 -0.20 29.68 68.60 2.04 1.84 16 4 C -0.29 -0.10 5.44 -16.76 -0.09 -0.19 16 5 C 0.14 -0.09 9.63 83.42 0.80 0.72 16 6 N -0.74 -0.12 5.46 -329.00 -1.80 -1.92 16 7 C 0.14 -0.26 3.36 44.33 0.15 -0.11 16 8 C 0.52 0.91 7.08 87.66 0.62 1.54 16 9 O -0.57 -5.70 16.10 -3.04 -0.05 -5.75 16 10 N -0.71 1.88 5.45 -463.05 -2.52 -0.64 16 11 C 0.12 -0.26 5.26 86.38 0.45 0.20 16 12 C 0.08 -0.32 1.91 -10.27 -0.02 -0.34 16 13 F -0.20 0.07 16.61 44.97 0.75 0.81 16 14 C -0.14 0.68 7.06 31.12 0.22 0.90 16 15 C -0.11 0.51 3.66 -10.27 -0.04 0.48 16 16 H 0.10 -0.30 7.72 -2.39 -0.02 -0.32 16 17 C 0.08 -0.42 6.89 71.98 0.50 0.08 16 18 O -0.60 0.87 13.66 -148.98 -2.03 -1.16 16 19 C -0.14 0.82 7.12 31.12 0.22 1.04 16 20 C -0.12 0.14 5.47 30.80 0.17 0.31 16 21 C -0.05 0.02 5.75 29.71 0.17 0.19 16 22 H 0.39 -2.76 8.70 -74.06 -0.64 -3.41 16 23 H 0.09 0.34 7.96 -2.38 -0.02 0.33 16 24 H -0.31 -2.43 7.11 99.48 0.71 -1.72 16 25 H -0.29 -1.48 7.10 99.48 0.71 -0.77 16 26 H 0.14 -0.54 4.37 -2.91 -0.01 -0.55 16 27 H 0.41 0.37 8.12 -92.71 -0.75 -0.38 16 28 H 0.12 -0.76 8.14 -2.39 -0.02 -0.78 16 29 H 0.42 -2.78 8.03 -92.70 -0.74 -3.53 16 30 H 0.09 -0.16 7.39 -2.39 -0.02 -0.18 16 31 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.10 -0.55 7.90 -2.39 -0.02 -0.57 16 33 H 0.08 -0.36 8.10 -2.39 -0.02 -0.38 16 34 H 0.06 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.06 -0.41 7.85 -2.38 -0.02 -0.43 16 36 H 0.40 -3.77 9.12 -74.05 -0.68 -4.45 16 37 H 0.09 -0.67 8.10 -2.39 -0.02 -0.69 16 38 H 0.11 -0.80 8.10 -2.38 -0.02 -0.82 16 39 H 0.10 -0.45 8.14 -2.38 -0.02 -0.46 16 40 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 42 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: 0.00 -20.21 343.87 -3.87 -24.08 By element: Atomic # 1 Polarization: -17.81 SS G_CDS: -1.70 Total: -19.51 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 3.36 Total: 4.96 kcal Atomic # 7 Polarization: 1.76 SS G_CDS: -4.32 Total: -2.56 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -3.99 Total: -9.62 kcal Atomic # 9 Polarization: 0.07 SS G_CDS: 0.75 Total: 0.81 kcal Atomic # 14 Polarization: -0.20 SS G_CDS: 2.04 Total: 1.84 kcal Total: -20.21 -3.87 -24.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_15413834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.514 kcal (2) G-P(sol) polarization free energy of solvation -20.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds