Wall clock time and date at job start Sun Mar 7 2021 09:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86298 * 109.46902 * 2 1 4 4 C 1.50701 * 109.47186 * 120.00039 * 2 1 3 5 5 C 1.34494 * 125.49153 * 209.97776 * 4 2 1 6 6 C 1.46754 * 106.36136 * 180.02562 * 5 4 2 7 7 C 1.47261 * 126.96529 * 179.97438 * 6 5 4 8 8 O 1.21626 * 120.00190 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00035 * 0.02636 * 7 6 5 10 10 C 1.46504 * 119.99906 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47225 * 180.02562 * 10 9 7 12 12 F 1.39905 * 112.84658 * 314.66505 * 11 10 9 13 13 C 1.53780 * 113.61453 * 85.85878 * 11 10 9 14 14 C 1.53965 * 87.01838 * 89.23383 * 13 11 10 15 15 H 1.08994 * 113.60972 * 270.80039 * 14 13 11 16 16 C 1.52994 * 113.66573 * 139.93314 * 14 13 11 17 17 O 1.42895 * 109.47220 * 87.43999 * 16 14 13 18 18 C 1.53781 * 113.61565 * 183.47023 * 11 10 9 19 19 C 1.36333 * 106.06363 * 0.25239 * 6 5 4 20 20 C 1.50996 * 126.78740 * 179.80400 * 19 6 5 21 21 C 1.53402 * 108.24478 * 164.25403 * 20 19 6 22 22 C 1.53165 * 109.03770 * 48.48260 * 21 20 19 23 23 C 1.53374 * 109.31167 * 290.19269 * 22 21 20 24 24 N 1.35220 * 108.65957 * 359.59402 * 19 6 5 25 25 H 0.96698 * 114.00304 * 299.99893 * 1 2 3 26 26 H 1.08994 * 109.47054 * 240.00021 * 2 1 3 27 27 H 1.48504 * 110.00053 * 300.00132 * 3 2 1 28 28 H 1.48499 * 109.99986 * 61.31557 * 3 2 1 29 29 H 1.07994 * 126.81709 * 0.02562 * 5 4 2 30 30 H 0.96999 * 120.00448 * 359.97438 * 9 7 6 31 31 H 1.09000 * 109.47232 * 60.00093 * 10 9 7 32 32 H 1.09006 * 109.47127 * 300.00015 * 10 9 7 33 33 H 1.09000 * 113.61461 * 203.74816 * 13 11 10 34 34 H 1.08995 * 113.61894 * 334.65553 * 13 11 10 35 35 H 1.09002 * 109.46642 * 207.43997 * 16 14 13 36 36 H 1.08998 * 109.47556 * 327.43760 * 16 14 13 37 37 H 0.96703 * 114.00252 * 179.97438 * 17 16 14 38 38 H 1.09001 * 113.61695 * 25.34545 * 18 11 10 39 39 H 1.08997 * 113.61223 * 156.25127 * 18 11 10 40 40 H 1.09001 * 109.71101 * 283.93798 * 20 19 6 41 41 H 1.08993 * 109.71080 * 44.52851 * 20 19 6 42 42 H 1.09001 * 109.54065 * 168.34944 * 21 20 19 43 43 H 1.08995 * 109.54459 * 288.52823 * 21 20 19 44 44 H 1.08999 * 109.46250 * 50.44616 * 22 21 20 45 45 H 1.09000 * 109.45622 * 170.42079 * 22 21 20 46 46 H 1.08996 * 110.13253 * 291.24022 * 23 22 21 47 47 H 1.09004 * 109.09315 * 170.84706 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 3.0860 -0.4466 1.8678 6 6 3.1557 -1.3781 2.9996 7 6 4.2343 -1.4808 3.9969 8 8 4.1620 -2.3050 4.8883 9 7 5.3017 -0.6613 3.9219 10 6 6.3750 -0.7638 4.9137 11 6 7.4574 0.2720 4.6029 12 9 7.7960 0.3133 3.2460 13 6 7.1775 1.6567 5.2104 14 6 7.9303 1.1706 6.4624 15 1 7.2890 0.6793 7.1941 16 6 8.8365 2.2341 7.0857 17 8 8.0825 3.0194 8.0113 18 6 8.6745 0.1912 5.5393 19 6 2.0225 -2.1335 2.9368 20 6 1.6220 -3.2431 3.8793 21 6 0.1299 -3.5334 3.6731 22 6 -0.1482 -3.6790 2.1739 23 6 -0.0052 -2.3105 1.4963 24 7 1.2886 -1.7252 1.8770 25 1 -0.3934 0.4417 0.7650 26 1 1.7924 -0.5138 -0.8899 27 1 1.5614 2.4679 -1.2085 28 1 1.5878 2.4586 1.2242 29 1 3.8167 0.3022 1.5998 30 1 5.3597 -0.0041 3.2108 31 1 6.8077 -1.7636 4.8789 32 1 5.9696 -0.5778 5.9084 33 1 7.6789 2.4719 4.6886 34 1 6.1193 1.8515 5.3843 35 1 9.6606 1.7483 7.6082 36 1 9.2332 2.8786 6.3012 37 1 8.5948 3.7150 8.4458 38 1 8.8229 -0.7953 5.9784 39 1 9.5857 0.6050 5.1076 40 1 2.2042 -4.1385 3.6615 41 1 1.7976 -2.9320 4.9091 42 1 -0.1357 -4.4585 4.1847 43 1 -0.4607 -2.7110 4.0766 44 1 0.5629 -4.3815 1.7392 45 1 -1.1622 -4.0509 2.0272 46 1 -0.8120 -1.6492 1.8124 47 1 -0.0419 -2.4425 0.4149 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_16915396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:11 Heat of formation + Delta-G solvation = -103.823787 kcal Electronic energy + Delta-G solvation = -30296.014413 eV Core-core repulsion = 25974.682528 eV Total energy + Delta-G solvation = -4321.331885 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.67817 -42.81181 -40.56294 -39.75810 -38.08760 -37.19782 -36.88845 -35.42208 -33.54105 -31.21493 -30.47585 -29.18187 -27.27045 -26.96040 -26.34186 -24.66296 -23.69331 -22.76606 -21.74327 -21.13055 -20.33066 -19.62250 -18.96433 -18.22848 -17.62945 -17.41978 -17.03685 -16.86374 -16.76698 -16.46834 -16.06295 -15.79506 -15.69825 -15.53684 -15.33383 -15.21204 -15.09310 -14.86225 -14.76870 -14.56652 -14.29963 -14.14310 -13.91135 -13.74673 -13.32779 -13.22125 -12.77778 -12.72823 -12.42771 -12.30480 -12.18961 -12.07694 -12.03214 -11.86136 -11.78379 -11.48225 -11.29912 -10.97064 -10.91353 -10.79982 -10.21484 -9.60136 -9.07458 -4.91175 0.67864 1.03646 1.41462 1.65393 1.75057 1.99296 2.27857 2.49665 3.06285 3.17919 3.20275 3.29646 3.33416 3.44904 3.51543 3.55025 3.66856 3.76611 3.79349 3.96567 4.10948 4.28567 4.30947 4.32102 4.38445 4.40260 4.42758 4.50778 4.57805 4.60699 4.63809 4.70749 4.71392 4.72923 4.76768 4.77740 4.80329 4.93539 4.96178 4.98994 5.06789 5.14036 5.18793 5.36374 5.38691 5.69874 5.99162 6.18947 6.34136 6.56306 6.90737 7.26478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.053 4.053 3 Si 0.794 3.206 4 C -0.016 4.016 5 C -0.163 4.163 6 C -0.259 4.259 7 C 0.591 3.409 8 O -0.586 6.586 9 N -0.716 5.716 10 C 0.123 3.877 11 C 0.081 3.919 12 F -0.204 7.204 13 C -0.142 4.142 14 C -0.110 4.110 15 H 0.096 0.904 16 C 0.084 3.916 17 O -0.597 6.597 18 C -0.134 4.134 19 C 0.106 3.894 20 C -0.054 4.054 21 C -0.124 4.124 22 C -0.134 4.134 23 C 0.104 3.896 24 N -0.428 5.428 25 H 0.385 0.615 26 H 0.131 0.869 27 H -0.293 1.293 28 H -0.291 1.291 29 H 0.179 0.821 30 H 0.413 0.587 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.397 0.603 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 2.305 -1.269 3.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.162 4.162 3 Si 0.697 3.303 4 C -0.124 4.124 5 C -0.186 4.186 6 C -0.268 4.268 7 C 0.382 3.618 8 O -0.468 6.468 9 N -0.368 5.368 10 C -0.001 4.001 11 C 0.062 3.938 12 F -0.184 7.184 13 C -0.180 4.180 14 C -0.128 4.128 15 H 0.114 0.886 16 C 0.007 3.993 17 O -0.406 6.406 18 C -0.172 4.172 19 C -0.012 4.012 20 C -0.092 4.092 21 C -0.161 4.161 22 C -0.172 4.172 23 C -0.016 4.016 24 N -0.104 5.104 25 H 0.234 0.766 26 H 0.149 0.851 27 H -0.220 1.220 28 H -0.218 1.218 29 H 0.196 0.804 30 H 0.250 0.750 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.247 0.753 38 H 0.113 0.887 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.126 0.874 46 H 0.113 0.887 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.807 1.737 -1.567 2.474 hybrid contribution -0.516 0.375 0.351 0.728 sum 0.291 2.111 -1.216 2.454 Atomic orbital electron populations 1.86565 1.18119 1.80092 1.50312 1.24994 0.83451 1.11542 0.96176 0.93487 0.90152 0.70224 0.76442 1.20974 0.96118 0.95643 0.99703 1.21984 0.98463 1.02615 0.95560 1.19930 0.98220 1.06230 1.02463 1.17526 0.81274 0.79622 0.83379 1.90741 1.79980 1.38483 1.37602 1.45486 1.20206 1.39019 1.32098 1.21572 0.86485 0.98729 0.93351 1.22583 0.96871 0.97729 0.76570 1.92845 1.93192 1.97382 1.34989 1.23748 1.02645 0.95497 0.96086 1.22389 0.98181 0.96586 0.95690 0.88575 1.22193 0.92981 0.92236 0.91897 1.86440 1.42548 1.51111 1.60508 1.23592 0.96982 1.01539 0.95062 1.20561 0.91628 0.98011 0.91038 1.20454 0.97026 0.94476 0.97243 1.21703 0.94391 1.03499 0.96539 1.21979 1.04648 0.95297 0.95257 1.22330 0.82054 0.95395 1.01774 1.44050 1.17939 1.27073 1.21385 0.76609 0.85110 1.22041 1.21791 0.80370 0.75002 0.90700 0.89549 0.87641 0.90287 0.92165 0.92157 0.75309 0.88651 0.86900 0.90109 0.90006 0.89208 0.91298 0.91219 0.87377 0.88695 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.67 10.68 -148.98 -1.59 -0.92 16 2 C -0.05 0.13 2.99 71.24 0.21 0.34 16 3 Si 0.79 -2.69 31.11 68.60 2.13 -0.56 16 4 C -0.02 -0.02 6.15 40.99 0.25 0.24 16 5 C -0.16 -0.23 9.09 23.64 0.21 -0.02 16 6 C -0.26 -1.87 6.28 -19.12 -0.12 -1.99 16 7 C 0.59 5.74 7.81 86.62 0.68 6.41 16 8 O -0.59 -9.44 15.33 -4.11 -0.06 -9.50 16 9 N -0.72 -2.75 5.45 -466.51 -2.54 -5.29 16 10 C 0.12 0.27 5.26 86.38 0.45 0.73 16 11 C 0.08 -0.08 1.88 -10.27 -0.02 -0.10 16 12 F -0.20 -0.44 16.67 44.97 0.75 0.31 16 13 C -0.14 0.31 7.08 31.18 0.22 0.53 16 14 C -0.11 0.27 3.66 -10.21 -0.04 0.24 16 15 H 0.10 -0.04 7.70 -2.39 -0.02 -0.05 16 16 C 0.08 -0.30 6.89 71.98 0.50 0.20 16 17 O -0.60 -0.04 13.66 -148.98 -2.03 -2.07 16 18 C -0.13 0.54 7.13 31.12 0.22 0.77 16 19 C 0.11 0.68 6.57 41.69 0.27 0.95 16 20 C -0.05 -0.26 5.33 30.08 0.16 -0.10 16 21 C -0.12 0.15 5.97 30.78 0.18 0.33 16 22 C -0.13 0.47 5.94 30.77 0.18 0.65 16 23 C 0.10 -0.23 5.33 86.41 0.46 0.23 16 24 N -0.43 -1.06 3.11 -493.18 -1.53 -2.59 16 25 H 0.38 -2.09 8.63 -74.06 -0.64 -2.73 16 26 H 0.13 -0.55 7.96 -2.39 -0.02 -0.57 16 27 H -0.29 -0.95 7.11 99.48 0.71 -0.24 16 28 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 29 H 0.18 -0.95 6.52 -2.91 -0.02 -0.97 16 30 H 0.41 -0.08 7.20 -92.71 -0.67 -0.75 16 31 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.09 0.25 7.38 -2.38 -0.02 0.23 16 33 H 0.11 -0.37 7.90 -2.39 -0.02 -0.38 16 34 H 0.08 -0.06 8.10 -2.39 -0.02 -0.08 16 35 H 0.06 -0.34 8.14 -2.39 -0.02 -0.35 16 36 H 0.06 -0.35 7.85 -2.39 -0.02 -0.37 16 37 H 0.40 -3.26 9.12 -74.06 -0.68 -3.94 16 38 H 0.09 -0.49 8.10 -2.39 -0.02 -0.51 16 39 H 0.11 -0.67 8.10 -2.39 -0.02 -0.69 16 40 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.08 0.67 7.39 -2.39 -0.02 0.65 16 42 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.07 -0.07 8.12 -2.39 -0.02 -0.09 16 44 H 0.07 -0.12 8.11 -2.39 -0.02 -0.14 16 45 H 0.11 -0.78 8.14 -2.39 -0.02 -0.80 16 46 H 0.09 -0.42 7.94 -2.39 -0.02 -0.44 16 47 H 0.10 -0.23 7.69 -2.39 -0.02 -0.25 16 Total: 0.00 -21.34 378.10 -1.98 -23.32 By element: Atomic # 1 Polarization: -11.16 SS G_CDS: -0.93 Total: -12.09 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 3.83 Total: 9.39 kcal Atomic # 7 Polarization: -3.81 SS G_CDS: -4.08 Total: -7.88 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -3.69 Total: -12.49 kcal Atomic # 9 Polarization: -0.44 SS G_CDS: 0.75 Total: 0.31 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: 2.13 Total: -0.56 kcal Total: -21.34 -1.98 -23.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_16915396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.502 kcal (2) G-P(sol) polarization free energy of solvation -21.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds