Wall clock time and date at job start Sun Mar 7 2021 09:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86301 * 109.47510 * 2 1 4 4 C 1.50705 * 109.47235 * 120.00150 * 2 1 3 5 5 C 1.38709 * 120.02708 * 74.97477 * 4 2 1 6 6 O 1.35895 * 120.05826 * 0.02562 * 5 4 2 7 7 C 1.42904 * 117.00128 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47031 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00089 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99605 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99557 * 180.02562 * 10 8 7 12 12 C 1.53008 * 109.46802 * 179.97438 * 11 10 8 13 13 F 1.39898 * 112.84830 * 314.66456 * 12 11 10 14 14 C 1.53783 * 113.61513 * 85.86307 * 12 11 10 15 15 C 1.54045 * 86.98754 * 89.15866 * 14 12 11 16 16 H 1.09004 * 113.61851 * 270.88494 * 15 14 12 17 17 C 1.52999 * 113.69648 * 139.98760 * 15 14 12 18 18 O 1.42895 * 109.46987 * 87.46820 * 17 15 14 19 19 C 1.53779 * 113.61228 * 183.46790 * 12 11 10 20 20 C 1.38759 * 119.88803 * 180.02562 * 5 4 2 21 21 C 1.38126 * 119.94113 * 359.97438 * 20 5 4 22 22 C 1.38290 * 120.05768 * 359.97438 * 21 20 5 23 23 C 1.38164 * 120.02603 * 255.00183 * 4 2 1 24 24 H 0.96700 * 113.99964 * 60.00013 * 1 2 3 25 25 H 1.08999 * 109.47649 * 239.99596 * 2 1 3 26 26 H 1.48503 * 109.99677 * 59.99713 * 3 2 1 27 27 H 1.48494 * 110.00131 * 181.31741 * 3 2 1 28 28 H 1.09000 * 109.46735 * 300.00020 * 7 6 5 29 29 H 1.09002 * 109.46782 * 59.99820 * 7 6 5 30 30 H 0.97002 * 120.00324 * 359.97438 * 10 8 7 31 31 H 1.09000 * 109.47300 * 299.99482 * 11 10 8 32 32 H 1.08994 * 109.47756 * 59.99856 * 11 10 8 33 33 H 1.08999 * 113.60914 * 203.66567 * 14 12 11 34 34 H 1.09002 * 113.61307 * 334.56428 * 14 12 11 35 35 H 1.09009 * 109.47181 * 207.46912 * 17 15 14 36 36 H 1.09002 * 109.46956 * 327.46523 * 17 15 14 37 37 H 0.96701 * 114.00043 * 179.97438 * 18 17 15 38 38 H 1.09006 * 113.61724 * 25.43435 * 19 12 11 39 39 H 1.08999 * 113.61757 * 156.33298 * 19 12 11 40 40 H 1.07998 * 120.02758 * 179.97438 * 20 5 4 41 41 H 1.07995 * 119.97120 * 179.97438 * 21 20 5 42 42 H 1.07995 * 119.94278 * 180.27458 * 22 21 20 43 43 H 1.08005 * 119.97654 * 359.95318 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.8692 -2.0940 1.3071 6 8 1.3558 -2.8107 0.2729 7 6 1.3227 -4.2316 0.4214 8 6 0.7249 -4.8521 -0.8150 9 8 0.3624 -4.1469 -1.7328 10 7 0.5921 -6.1905 -0.9004 11 6 0.0114 -6.7937 -2.1026 12 6 -0.0242 -8.3151 -1.9434 13 9 1.1719 -8.8366 -1.4388 14 6 -1.2767 -8.8291 -1.2140 15 6 -1.9516 -8.9045 -2.5967 16 1 -2.4531 -7.9818 -2.8888 17 6 -2.8293 -10.1433 -2.7858 18 8 -4.1484 -9.8696 -2.3094 19 6 -0.5405 -9.0529 -3.1900 20 6 2.3321 -2.7452 2.4416 21 6 2.8539 -2.0145 3.4913 22 6 2.9157 -0.6353 3.4119 23 6 2.4536 0.0159 2.2834 24 1 -0.3933 0.4417 -0.7651 25 1 1.7924 -0.5139 -0.8899 26 1 1.5615 2.4678 1.2085 27 1 3.5346 1.7702 -0.0321 28 1 2.3367 -4.6059 0.5623 29 1 0.7154 -4.4922 1.2883 30 1 0.8816 -6.7545 -0.1662 31 1 -1.0024 -6.4191 -2.2437 32 1 0.6189 -6.5336 -2.9693 33 1 -1.1386 -9.8018 -0.7419 34 1 -1.7260 -8.0935 -0.5468 35 1 -2.8713 -10.4008 -3.8442 36 1 -2.4063 -10.9772 -2.2256 37 1 -4.7608 -10.6127 -2.3985 38 1 -0.3960 -8.4980 -4.1170 39 1 -0.2017 -10.0867 -3.2572 40 1 2.2844 -3.8223 2.5039 41 1 3.2139 -2.5208 4.3747 42 1 3.3281 -0.0661 4.2319 43 1 2.5026 1.0932 2.2240 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_2989392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:14 Heat of formation + Delta-G solvation = -143.749734 kcal Electronic energy + Delta-G solvation = -27410.217096 eV Core-core repulsion = 23144.972850 eV Total energy + Delta-G solvation = -4265.244247 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.141 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.78582 -41.70958 -40.80624 -39.98460 -38.56391 -37.50870 -37.24979 -35.69276 -32.99823 -31.62048 -30.67178 -29.07989 -27.12396 -26.75930 -26.65290 -23.70145 -22.86142 -22.58334 -21.74462 -20.32411 -19.44946 -18.62055 -18.43847 -18.27089 -17.69789 -17.55699 -17.27807 -16.94898 -16.75959 -16.66214 -16.08664 -15.79883 -15.74442 -15.60719 -15.25528 -15.08090 -14.90356 -14.69317 -14.40820 -14.10982 -13.90219 -13.80845 -13.62976 -13.39120 -13.07198 -12.82975 -12.75595 -12.38381 -12.24086 -12.15099 -12.02898 -11.84535 -11.56306 -11.38293 -11.13155 -10.84536 -10.40158 -10.27429 -10.12554 -9.35491 -4.97439 0.06897 0.26175 1.26994 1.31324 1.31729 1.60765 1.89499 2.42408 2.53452 2.98331 3.06605 3.20991 3.22837 3.40624 3.44466 3.49433 3.66399 3.82613 3.88610 3.91027 3.97283 4.04847 4.14216 4.20611 4.24221 4.32702 4.35200 4.38677 4.48949 4.52595 4.57797 4.64553 4.66271 4.70903 4.83732 4.88992 4.96478 5.12990 5.14125 5.21691 5.30856 5.35433 5.58494 6.11622 6.29063 6.85926 6.86997 6.94281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.080 4.080 3 Si 0.782 3.218 4 C -0.136 4.136 5 C 0.132 3.868 6 O -0.306 6.306 7 C 0.035 3.965 8 C 0.518 3.482 9 O -0.562 6.562 10 N -0.711 5.711 11 C 0.121 3.879 12 C 0.081 3.919 13 F -0.204 7.204 14 C -0.142 4.142 15 C -0.111 4.111 16 H 0.098 0.902 17 C 0.084 3.916 18 O -0.598 6.598 19 C -0.135 4.135 20 C -0.208 4.208 21 C -0.073 4.073 22 C -0.157 4.157 23 C -0.104 4.104 24 H 0.397 0.603 25 H 0.065 0.935 26 H -0.281 1.281 27 H -0.286 1.286 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.419 0.581 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.397 0.603 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.163 0.837 41 H 0.161 0.839 42 H 0.149 0.851 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.346 -5.509 0.387 5.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.188 4.188 3 Si 0.686 3.314 4 C -0.137 4.137 5 C 0.087 3.913 6 O -0.219 6.219 7 C -0.043 4.043 8 C 0.304 3.696 9 O -0.440 6.440 10 N -0.366 5.366 11 C -0.003 4.003 12 C 0.063 3.937 13 F -0.185 7.185 14 C -0.180 4.180 15 C -0.129 4.129 16 H 0.116 0.884 17 C 0.006 3.994 18 O -0.406 6.406 19 C -0.173 4.173 20 C -0.227 4.227 21 C -0.090 4.090 22 C -0.175 4.175 23 C -0.122 4.122 24 H 0.247 0.753 25 H 0.083 0.917 26 H -0.208 1.208 27 H -0.213 1.213 28 H 0.142 0.858 29 H 0.139 0.861 30 H 0.257 0.743 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.247 0.753 38 H 0.115 0.885 39 H 0.131 0.869 40 H 0.180 0.820 41 H 0.179 0.821 42 H 0.167 0.833 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.865 -4.123 0.630 4.259 hybrid contribution 0.046 -1.473 0.419 1.532 sum 0.911 -5.595 1.049 5.765 Atomic orbital electron populations 1.86441 1.17633 1.82575 1.50574 1.24867 0.85713 1.11633 0.96600 0.94146 0.77416 0.75043 0.84759 1.19057 1.05643 0.91382 0.97582 1.18986 0.93925 0.90794 0.87637 1.86153 1.77875 1.18636 1.39215 1.22707 1.04602 0.79799 0.97144 1.20387 0.78391 0.82482 0.88349 1.90764 1.49909 1.62243 1.41046 1.45512 1.64074 1.05951 1.21089 1.21646 1.00789 0.89489 0.88371 1.22584 0.80895 0.92089 0.98165 1.92848 1.49314 1.87655 1.88654 1.23772 0.93346 1.03346 0.97534 1.22422 0.94224 0.99933 0.96354 0.88412 1.22196 0.82457 0.95959 0.98763 1.86436 1.22516 1.44880 1.86800 1.23600 0.93864 1.02746 0.97048 1.21682 1.05050 1.02126 0.93806 1.21422 0.95425 0.93637 0.98555 1.21378 1.02236 0.95624 0.98268 1.21023 0.98378 0.99351 0.93431 0.75313 0.91705 1.20834 1.21288 0.85812 0.86067 0.74347 0.89135 0.90290 0.87750 0.90007 0.92155 0.92214 0.75257 0.88548 0.86932 0.81996 0.82106 0.83337 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.98 12.86 -148.98 -1.92 -6.90 16 2 C -0.08 -0.63 2.37 71.24 0.17 -0.46 16 3 Si 0.78 1.96 30.20 68.60 2.07 4.03 16 4 C -0.14 -1.40 5.30 -19.77 -0.10 -1.50 16 5 C 0.13 1.12 6.66 22.51 0.15 1.27 16 6 O -0.31 -2.98 9.00 -73.33 -0.66 -3.64 16 7 C 0.04 0.01 5.22 71.24 0.37 0.38 16 8 C 0.52 2.61 7.91 87.66 0.69 3.30 16 9 O -0.56 -8.64 16.50 16.01 0.26 -8.38 16 10 N -0.71 0.83 5.45 -463.06 -2.53 -1.70 16 11 C 0.12 -0.09 5.26 86.38 0.45 0.36 16 12 C 0.08 -0.27 1.88 -10.26 -0.02 -0.29 16 13 F -0.20 -0.01 16.67 44.97 0.75 0.74 16 14 C -0.14 0.57 7.09 31.21 0.22 0.79 16 15 C -0.11 0.43 3.66 -10.18 -0.04 0.39 16 16 H 0.10 -0.18 7.70 -2.39 -0.02 -0.20 16 17 C 0.08 -0.37 6.89 71.98 0.50 0.13 16 18 O -0.60 0.41 13.66 -148.98 -2.03 -1.63 16 19 C -0.13 0.75 7.13 31.12 0.22 0.97 16 20 C -0.21 -0.39 9.04 22.37 0.20 -0.19 16 21 C -0.07 -0.04 10.04 22.26 0.22 0.18 16 22 C -0.16 -0.53 10.04 22.28 0.22 -0.31 16 23 C -0.10 -0.82 8.66 22.25 0.19 -0.63 16 24 H 0.40 -0.48 8.74 -74.06 -0.65 -1.12 16 25 H 0.06 0.55 7.83 -2.39 -0.02 0.53 16 26 H -0.28 -2.04 6.75 99.48 0.67 -1.37 16 27 H -0.29 -2.08 7.11 99.48 0.71 -1.37 16 28 H 0.12 -0.73 7.66 -2.39 -0.02 -0.75 16 29 H 0.12 -0.64 7.66 -2.39 -0.02 -0.66 16 30 H 0.42 -2.71 8.08 -92.71 -0.75 -3.45 16 31 H 0.09 0.02 7.37 -2.39 -0.02 0.00 16 32 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.10 -0.51 7.91 -2.39 -0.02 -0.53 16 34 H 0.08 -0.26 8.10 -2.39 -0.02 -0.28 16 35 H 0.06 -0.38 8.14 -2.38 -0.02 -0.40 16 36 H 0.06 -0.39 7.85 -2.39 -0.02 -0.41 16 37 H 0.40 -3.51 9.12 -74.06 -0.68 -4.18 16 38 H 0.10 -0.64 8.10 -2.38 -0.02 -0.66 16 39 H 0.11 -0.80 8.10 -2.39 -0.02 -0.81 16 40 H 0.16 -0.88 6.30 -2.91 -0.02 -0.90 16 41 H 0.16 -0.95 8.06 -2.91 -0.02 -0.97 16 42 H 0.15 -0.21 8.06 -2.91 -0.02 -0.24 16 43 H 0.13 0.87 4.90 -2.91 -0.01 0.85 16 Total: 0.00 -28.35 363.15 -1.59 -29.94 By element: Atomic # 1 Polarization: -15.88 SS G_CDS: -1.00 Total: -16.87 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 3.46 Total: 4.41 kcal Atomic # 7 Polarization: 0.83 SS G_CDS: -2.53 Total: -1.70 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -4.35 Total: -20.55 kcal Atomic # 9 Polarization: -0.01 SS G_CDS: 0.75 Total: 0.74 kcal Atomic # 14 Polarization: 1.96 SS G_CDS: 2.07 Total: 4.03 kcal Total: -28.35 -1.59 -29.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_2989392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.810 kcal (2) G-P(sol) polarization free energy of solvation -28.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds