Wall clock time and date at job start Sun Mar 7 2021 09:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86292 * 109.46804 * 2 1 4 4 C 1.50696 * 109.47181 * 239.99718 * 2 1 3 5 5 C 1.38269 * 119.94750 * 300.00422 * 4 2 1 6 6 C 1.38139 * 120.05370 * 180.02562 * 5 4 2 7 7 C 1.38734 * 119.94711 * 359.97438 * 6 5 4 8 8 O 1.35903 * 120.05269 * 180.02562 * 7 6 5 9 9 C 1.42906 * 116.99522 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46702 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00072 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99762 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47551 * 180.02562 * 13 12 10 15 15 F 1.39901 * 112.85163 * 316.20211 * 14 13 12 16 16 C 1.53788 * 113.61199 * 87.50597 * 14 13 12 17 17 C 1.53774 * 87.08235 * 89.11724 * 16 14 13 18 18 H 1.08997 * 113.61693 * 270.88333 * 17 16 14 19 19 C 1.53002 * 113.68996 * 139.98901 * 17 16 14 20 20 O 1.42904 * 109.46930 * 87.46774 * 19 17 16 21 21 C 1.53781 * 87.08339 * 25.43287 * 17 16 14 22 22 C 1.38725 * 119.88813 * 0.27668 * 7 6 5 23 23 C 1.38145 * 119.94387 * 359.46769 * 22 7 6 24 24 H 0.96702 * 113.99741 * 60.00546 * 1 2 3 25 25 H 1.09005 * 109.46731 * 119.99736 * 2 1 3 26 26 H 1.48499 * 110.00593 * 298.67770 * 3 2 1 27 27 H 1.48506 * 110.00394 * 60.00092 * 3 2 1 28 28 H 1.07997 * 119.96991 * 359.97026 * 5 4 2 29 29 H 1.08006 * 120.02293 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.46890 * 59.99975 * 9 8 7 31 31 H 1.09000 * 109.47141 * 299.99618 * 9 8 7 32 32 H 0.96999 * 120.00047 * 0.02562 * 12 10 9 33 33 H 1.09000 * 109.47024 * 300.00478 * 13 12 10 34 34 H 1.09004 * 109.46875 * 60.00324 * 13 12 10 35 35 H 1.09004 * 113.61282 * 203.66954 * 16 14 13 36 36 H 1.08997 * 113.61181 * 334.56089 * 16 14 13 37 37 H 1.09000 * 109.46995 * 207.46143 * 19 17 16 38 38 H 1.08998 * 109.47446 * 327.46416 * 19 17 16 39 39 H 0.96693 * 114.00087 * 180.02562 * 20 19 17 40 40 H 1.09001 * 113.61736 * 220.02268 * 21 17 16 41 41 H 1.09000 * 113.69132 * 89.12584 * 21 17 16 42 42 H 1.08000 * 120.02603 * 179.72597 * 22 7 6 43 43 H 1.08002 * 119.97017 * 180.23008 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.5966 -2.0342 -1.4481 6 6 2.0563 -2.6877 -2.5749 7 6 2.8540 -2.0147 -3.4889 8 8 3.3071 -2.6554 -4.5985 9 6 4.1241 -1.9003 -5.4954 10 6 4.5295 -2.7693 -6.6580 11 8 4.1559 -3.9219 -6.7128 12 7 5.3071 -2.2657 -7.6368 13 6 5.7017 -3.1106 -8.7667 14 6 6.5763 -2.3022 -9.7270 15 9 6.0809 -1.0148 -9.9601 16 6 8.0724 -2.3337 -9.3723 17 6 8.1743 -3.5903 -10.2528 18 1 7.9880 -4.5184 -9.7124 19 6 9.4445 -3.6431 -11.1041 20 8 10.4965 -4.2519 -10.3526 21 6 6.9456 -3.0622 -11.0120 22 6 3.1928 -0.6881 -3.2655 23 6 2.7262 -0.0374 -2.1398 24 1 -0.3933 0.4416 -0.7651 25 1 1.7923 -0.5138 0.8901 26 1 1.5879 2.4586 -1.2242 27 1 1.5614 2.4679 1.2085 28 1 0.9760 -2.5579 -0.7361 29 1 1.7948 -3.7219 -2.7443 30 1 5.0157 -1.5554 -4.9717 31 1 3.5628 -1.0409 -5.8621 32 1 5.6062 -1.3440 -7.5928 33 1 6.2637 -3.9693 -8.3994 34 1 4.8105 -3.4566 -9.2903 35 1 8.6312 -1.4820 -9.7605 36 1 8.2669 -2.5231 -8.3167 37 1 9.2548 -4.2287 -12.0037 38 1 9.7366 -2.6311 -11.3842 39 1 11.3341 -4.3184 -10.8311 40 1 6.2304 -3.8399 -11.2800 41 1 7.1949 -2.4098 -11.8488 42 1 3.8173 -0.1632 -3.9733 43 1 2.9866 0.9965 -1.9674 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_2989410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:18 Heat of formation + Delta-G solvation = -146.906189 kcal Electronic energy + Delta-G solvation = -26726.082500 eV Core-core repulsion = 22460.701379 eV Total energy + Delta-G solvation = -4265.381121 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.77027 -41.59427 -40.75732 -40.00004 -39.03405 -37.30675 -37.19212 -35.68216 -32.47027 -31.77554 -30.87070 -29.14305 -27.11936 -26.82759 -26.08496 -23.99029 -22.86781 -22.42193 -21.73367 -20.31491 -19.53036 -18.68015 -18.29522 -18.23158 -17.66574 -17.50278 -17.05043 -16.83597 -16.62910 -16.44128 -16.19876 -15.77409 -15.74061 -15.67387 -15.50469 -14.91550 -14.81202 -14.61925 -14.39001 -14.37178 -13.88625 -13.76420 -13.54722 -13.46215 -13.32763 -12.81626 -12.37425 -12.29840 -12.15681 -12.13672 -12.07837 -11.65435 -11.54373 -11.36214 -11.11320 -10.83635 -10.59375 -10.38135 -10.04426 -9.24722 -4.90607 0.26391 0.30258 1.33864 1.34395 1.36708 1.61750 1.98711 2.48806 2.64270 2.99487 3.08246 3.22868 3.24416 3.43326 3.45021 3.50948 3.72828 3.81130 3.90555 3.93532 4.01061 4.04767 4.25256 4.30255 4.34274 4.36371 4.41754 4.50757 4.55889 4.58693 4.66233 4.67398 4.69173 4.72525 4.90813 4.96839 4.98015 5.14342 5.16332 5.24821 5.32278 5.48760 5.68331 6.17926 6.35353 6.50525 6.87803 6.97516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.082 4.082 3 Si 0.771 3.229 4 C -0.158 4.158 5 C -0.060 4.060 6 C -0.166 4.166 7 C 0.120 3.880 8 O -0.319 6.319 9 C 0.038 3.962 10 C 0.516 3.484 11 O -0.569 6.569 12 N -0.711 5.711 13 C 0.120 3.880 14 C 0.082 3.918 15 F -0.204 7.204 16 C -0.141 4.141 17 C -0.112 4.112 18 H 0.098 0.902 19 C 0.084 3.916 20 O -0.597 6.597 21 C -0.136 4.136 22 C -0.201 4.201 23 C -0.075 4.075 24 H 0.386 0.614 25 H 0.122 0.878 26 H -0.279 1.279 27 H -0.307 1.307 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.420 0.580 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.397 0.603 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.164 0.836 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.747 4.984 -4.011 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.190 4.190 3 Si 0.677 3.323 4 C -0.159 4.159 5 C -0.078 4.078 6 C -0.184 4.184 7 C 0.075 3.925 8 O -0.232 6.232 9 C -0.040 4.040 10 C 0.302 3.698 11 O -0.447 6.447 12 N -0.366 5.366 13 C -0.004 4.004 14 C 0.063 3.937 15 F -0.184 7.184 16 C -0.178 4.178 17 C -0.130 4.130 18 H 0.116 0.884 19 C 0.006 3.994 20 O -0.406 6.406 21 C -0.174 4.174 22 C -0.219 4.219 23 C -0.093 4.093 24 H 0.235 0.765 25 H 0.140 0.860 26 H -0.205 1.205 27 H -0.236 1.236 28 H 0.152 0.848 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.258 0.742 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.247 0.753 40 H 0.113 0.887 41 H 0.130 0.870 42 H 0.181 0.819 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.855 4.469 -3.146 8.009 hybrid contribution -0.763 0.161 -0.977 1.250 sum 5.092 4.630 -4.123 8.023 Atomic orbital electron populations 1.86569 1.18814 1.80400 1.50167 1.25240 0.83251 1.12008 0.98546 0.94140 0.90169 0.71672 0.76357 1.20298 1.02015 0.95180 0.98372 1.20910 0.97124 0.94029 0.95741 1.20624 1.01473 1.01309 0.95040 1.19217 0.94722 0.92024 0.86517 1.86124 1.65090 1.40271 1.31756 1.22711 0.97899 0.94051 0.89330 1.20534 0.77961 0.87599 0.83691 1.90773 1.55402 1.20071 1.78424 1.45516 1.52028 1.16918 1.22109 1.21640 0.99033 0.93552 0.86169 1.22569 0.93874 0.79135 0.98106 1.92848 1.89627 1.40572 1.95354 1.23719 0.92780 0.99227 1.02115 1.22374 0.94293 0.98629 0.97703 0.88426 1.22196 0.86458 0.97380 0.93343 1.86434 1.24249 1.83774 1.46151 1.23613 0.97246 1.00405 0.96153 1.21499 1.05792 0.93270 1.01326 1.21067 0.95354 1.00171 0.92680 0.76532 0.86029 1.20536 1.23595 0.84807 0.85525 0.85234 0.85717 0.74196 0.89141 0.90448 0.87724 0.89829 0.92275 0.92175 0.75266 0.88705 0.86974 0.81857 0.82943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.65 12.77 -148.98 -1.90 -3.55 16 2 C -0.08 0.05 2.82 71.23 0.20 0.25 16 3 Si 0.77 -2.30 29.78 68.60 2.04 -0.25 16 4 C -0.16 -0.02 5.39 -19.85 -0.11 -0.13 16 5 C -0.06 -0.17 9.60 22.25 0.21 0.05 16 6 C -0.17 -0.81 9.99 22.36 0.22 -0.59 16 7 C 0.12 0.42 6.69 22.50 0.15 0.57 16 8 O -0.32 -1.91 9.67 -73.42 -0.71 -2.62 16 9 C 0.04 -0.11 5.22 71.24 0.37 0.26 16 10 C 0.52 1.61 7.91 87.66 0.69 2.30 16 11 O -0.57 -8.11 16.50 16.01 0.26 -7.85 16 12 N -0.71 1.95 5.45 -463.07 -2.52 -0.57 16 13 C 0.12 -0.20 5.27 86.38 0.45 0.25 16 14 C 0.08 -0.34 1.91 -10.27 -0.02 -0.36 16 15 F -0.20 0.20 16.61 44.97 0.75 0.94 16 16 C -0.14 0.71 7.06 31.12 0.22 0.93 16 17 C -0.11 0.50 3.66 -10.27 -0.04 0.46 16 18 H 0.10 -0.24 7.72 -2.39 -0.02 -0.26 16 19 C 0.08 -0.41 6.89 71.98 0.50 0.08 16 20 O -0.60 0.75 13.66 -148.98 -2.04 -1.28 16 21 C -0.14 0.82 7.12 31.12 0.22 1.04 16 22 C -0.20 0.50 9.04 22.36 0.20 0.70 16 23 C -0.08 0.21 8.66 22.26 0.19 0.40 16 24 H 0.39 -1.00 8.70 -74.06 -0.64 -1.65 16 25 H 0.12 -0.22 7.96 -2.38 -0.02 -0.24 16 26 H -0.28 -0.02 7.11 99.48 0.71 0.68 16 27 H -0.31 -1.68 7.11 99.48 0.71 -0.97 16 28 H 0.13 0.25 8.06 -2.91 -0.02 0.23 16 29 H 0.13 0.68 8.06 -2.91 -0.02 0.66 16 30 H 0.13 -1.26 7.65 -2.39 -0.02 -1.28 16 31 H 0.13 -1.11 7.67 -2.39 -0.02 -1.13 16 32 H 0.42 -3.49 8.03 -92.71 -0.74 -4.23 16 33 H 0.09 -0.07 7.39 -2.39 -0.02 -0.09 16 34 H 0.08 0.02 8.14 -2.38 -0.02 0.00 16 35 H 0.10 -0.61 7.90 -2.38 -0.02 -0.63 16 36 H 0.08 -0.38 8.10 -2.39 -0.02 -0.40 16 37 H 0.06 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.06 -0.43 7.85 -2.39 -0.02 -0.45 16 39 H 0.40 -3.71 9.12 -74.06 -0.68 -4.38 16 40 H 0.09 -0.65 8.10 -2.39 -0.02 -0.67 16 41 H 0.11 -0.84 8.10 -2.39 -0.02 -0.86 16 42 H 0.16 -1.57 6.30 -2.91 -0.02 -1.59 16 43 H 0.15 -1.19 4.87 -2.91 -0.01 -1.20 16 Total: 0.00 -26.22 363.73 -1.60 -27.81 By element: Atomic # 1 Polarization: -17.90 SS G_CDS: -0.96 Total: -18.86 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 3.48 Total: 6.22 kcal Atomic # 7 Polarization: 1.95 SS G_CDS: -2.52 Total: -0.57 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -4.38 Total: -15.29 kcal Atomic # 9 Polarization: 0.20 SS G_CDS: 0.75 Total: 0.94 kcal Atomic # 14 Polarization: -2.30 SS G_CDS: 2.04 Total: -0.25 kcal Total: -26.22 -1.60 -27.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_2989410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.092 kcal (2) G-P(sol) polarization free energy of solvation -26.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds