Wall clock time and date at job start Sun Mar 7 2021 09:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.46914 * 2 1 4 4 C 1.50694 * 109.47589 * 239.99785 * 2 1 3 5 5 C 1.38242 * 119.97420 * 120.01726 * 4 2 1 6 6 C 1.38289 * 120.11288 * 179.97438 * 5 4 2 7 7 C 1.38125 * 120.05590 * 359.68352 * 6 5 4 8 8 C 1.38753 * 119.94059 * 0.59507 * 7 6 5 9 9 O 1.35901 * 120.05749 * 179.69680 * 8 7 6 10 10 C 1.42903 * 116.99844 * 359.73376 * 9 8 7 11 11 C 1.52998 * 109.47367 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47270 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47353 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99689 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00185 * 179.97438 * 13 12 11 16 16 C 1.46502 * 119.99854 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.46879 * 180.02562 * 16 15 13 18 18 F 1.39889 * 112.84950 * 316.19896 * 17 16 15 19 19 C 1.53784 * 113.61174 * 87.50174 * 17 16 15 20 20 C 1.53787 * 87.07648 * 139.98077 * 19 17 16 21 21 H 1.09003 * 113.68991 * 220.00775 * 20 19 17 22 22 C 1.52997 * 113.61418 * 89.11807 * 20 19 17 23 23 O 1.42898 * 109.47319 * 87.50225 * 22 20 19 24 24 C 1.53780 * 87.08169 * 334.56416 * 20 19 17 25 25 C 1.38169 * 119.97035 * 300.00376 * 4 2 1 26 26 H 0.96708 * 114.00024 * 60.00601 * 1 2 3 27 27 H 1.09003 * 109.46472 * 119.99689 * 2 1 3 28 28 H 1.48497 * 109.99992 * 59.99506 * 3 2 1 29 29 H 1.48494 * 109.99846 * 181.31649 * 3 2 1 30 30 H 1.07997 * 119.94067 * 359.97438 * 5 4 2 31 31 H 1.07994 * 119.97193 * 179.97438 * 6 5 4 32 32 H 1.07995 * 120.03247 * 180.32035 * 7 6 5 33 33 H 1.08999 * 109.47769 * 59.99238 * 10 9 8 34 34 H 1.09001 * 109.46558 * 299.99678 * 10 9 8 35 35 H 1.08999 * 109.47250 * 59.98979 * 11 10 9 36 36 H 1.09001 * 109.47066 * 299.99425 * 11 10 9 37 37 H 1.09007 * 109.47075 * 59.99661 * 12 11 10 38 38 H 1.09001 * 109.47028 * 299.99964 * 12 11 10 39 39 H 0.97001 * 120.00240 * 0.02562 * 15 13 12 40 40 H 1.08993 * 109.47242 * 60.00314 * 16 15 13 41 41 H 1.09001 * 109.47405 * 300.00184 * 16 15 13 42 42 H 1.08998 * 113.61666 * 25.43617 * 19 17 16 43 43 H 1.08994 * 113.61409 * 254.52493 * 19 17 16 44 44 H 1.09002 * 109.47153 * 327.49917 * 22 20 19 45 45 H 1.09001 * 109.46832 * 207.50108 * 22 20 19 46 46 H 0.96701 * 113.99881 * 180.02562 * 23 22 20 47 47 H 1.09002 * 113.60839 * 139.98089 * 24 20 19 48 48 H 1.08996 * 113.62098 * 270.79857 * 24 20 19 49 49 H 1.08002 * 120.03017 * 0.03609 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7265 -0.0382 -2.1398 6 6 3.1896 -0.6874 -3.2695 7 6 2.8640 -2.0118 -3.4887 8 6 2.0613 -2.6870 -2.5804 9 8 1.7344 -3.9883 -2.7968 10 6 2.2473 -4.5973 -3.9835 11 6 1.7777 -6.0517 -4.0542 12 6 2.3263 -6.7035 -5.3251 13 6 1.8643 -8.1362 -5.3945 14 8 1.1647 -8.5910 -4.5144 15 7 2.2277 -8.9118 -6.4351 16 6 1.7780 -10.3045 -6.5027 17 6 2.3268 -10.9564 -7.7736 18 9 2.2138 -10.1329 -8.8988 19 6 3.7250 -11.5715 -7.5959 20 6 3.2354 -12.7400 -8.4677 21 1 3.5775 -13.7162 -8.1239 22 6 3.4624 -12.5244 -9.9653 23 8 4.7672 -12.9863 -10.3207 24 6 1.8125 -12.3873 -8.0032 25 6 1.5973 -2.0332 -1.4484 26 1 -0.3933 0.4417 -0.7651 27 1 1.7922 -0.5138 0.8901 28 1 1.5613 2.4679 1.2084 29 1 3.5345 1.7703 -0.0321 30 1 2.9864 0.9958 -1.9676 31 1 3.8102 -0.1600 -3.9787 32 1 3.2301 -2.5199 -4.3685 33 1 3.3368 -4.5681 -3.9653 34 1 1.8839 -4.0549 -4.8563 35 1 0.6883 -6.0813 -4.0722 36 1 2.1415 -6.5938 -3.1814 37 1 3.4158 -6.6738 -5.3074 38 1 1.9622 -6.1613 -6.1977 39 1 2.7869 -8.5480 -7.1392 40 1 0.6886 -10.3341 -6.5201 41 1 2.1424 -10.8468 -5.6302 42 1 3.9489 -11.8574 -6.5682 43 1 4.5210 -10.9867 -8.0567 44 1 3.3774 -11.4626 -10.1966 45 1 2.7139 -13.0803 -10.5299 46 1 4.9803 -12.8801 -11.2579 47 1 1.0647 -12.4611 -8.7928 48 1 1.5130 -12.8973 -7.0877 49 1 0.9758 -2.5579 -0.7378 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_4549616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:28 Heat of formation + Delta-G solvation = -160.218692 kcal Electronic energy + Delta-G solvation = -29946.130035 eV Core-core repulsion = 25369.096403 eV Total energy + Delta-G solvation = -4577.033632 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.172 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -48.95665 -41.30182 -40.85978 -39.83120 -39.18141 -37.31557 -37.21800 -35.66994 -34.91862 -32.44512 -31.36975 -30.46208 -28.37613 -27.09727 -26.94338 -26.41094 -23.74282 -23.51393 -22.74131 -21.86669 -21.46037 -20.13125 -19.23812 -18.65488 -18.24310 -17.83373 -17.52008 -17.42323 -17.20970 -16.99303 -16.88036 -16.66904 -16.34270 -16.10711 -15.93225 -15.47723 -15.38696 -15.24191 -14.92444 -14.87407 -14.64608 -14.21422 -14.20294 -14.13773 -13.75177 -13.49633 -13.31208 -13.26480 -13.16319 -13.04567 -12.74191 -12.45979 -12.33175 -12.24932 -11.97450 -11.81944 -11.62353 -11.59874 -11.59387 -11.32354 -11.03367 -10.79865 -10.50759 -10.23812 -9.91079 -9.24317 -4.98877 0.21787 0.41002 1.29864 1.54857 1.64941 1.85907 1.97249 2.32548 2.68855 2.98659 3.09407 3.17218 3.25733 3.47244 3.50142 3.61603 3.67367 3.84971 3.86850 3.90413 3.97222 4.10975 4.17823 4.21559 4.25229 4.34341 4.35320 4.38629 4.41209 4.43073 4.51801 4.54425 4.56996 4.62653 4.64532 4.68093 4.69282 4.85080 4.91390 4.98994 4.99382 5.04760 5.14234 5.23231 5.28873 5.33511 5.38980 5.45573 5.74968 6.39910 6.43037 6.74346 6.81988 7.13918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.084 4.084 3 Si 0.793 3.207 4 C -0.085 4.085 5 C -0.160 4.160 6 C -0.072 4.072 7 C -0.206 4.206 8 C 0.116 3.884 9 O -0.339 6.339 10 C 0.058 3.942 11 C -0.101 4.101 12 C -0.128 4.128 13 C 0.511 3.489 14 O -0.586 6.586 15 N -0.720 5.720 16 C 0.112 3.888 17 C 0.082 3.918 18 F -0.193 7.193 19 C -0.141 4.141 20 C -0.118 4.118 21 H 0.092 0.908 22 C 0.083 3.917 23 O -0.594 6.594 24 C -0.136 4.136 25 C -0.152 4.152 26 H 0.395 0.605 27 H 0.102 0.898 28 H -0.300 1.300 29 H -0.281 1.281 30 H 0.148 0.852 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.416 0.584 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.397 0.603 47 H 0.089 0.911 48 H 0.124 0.876 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.510 2.038 -8.605 9.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.193 4.193 3 Si 0.698 3.302 4 C -0.085 4.085 5 C -0.178 4.178 6 C -0.090 4.090 7 C -0.225 4.225 8 C 0.071 3.929 9 O -0.253 6.253 10 C -0.017 4.017 11 C -0.139 4.139 12 C -0.167 4.167 13 C 0.299 3.701 14 O -0.466 6.466 15 N -0.373 5.373 16 C -0.013 4.013 17 C 0.064 3.936 18 F -0.173 7.173 19 C -0.179 4.179 20 C -0.137 4.137 21 H 0.110 0.890 22 C 0.006 3.994 23 O -0.402 6.402 24 C -0.174 4.174 25 C -0.171 4.171 26 H 0.245 0.755 27 H 0.119 0.881 28 H -0.229 1.229 29 H -0.208 1.208 30 H 0.165 0.835 31 H 0.177 0.823 32 H 0.171 0.829 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.253 0.747 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.247 0.753 47 H 0.108 0.892 48 H 0.142 0.858 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.471 1.713 -6.328 7.418 hybrid contribution 0.087 -0.694 -0.663 0.964 sum 3.558 1.020 -6.991 7.910 Atomic orbital electron populations 1.86472 1.17352 1.82299 1.50439 1.25393 0.85306 1.11736 0.96861 0.93505 0.77742 0.74377 0.84567 1.20216 0.97829 0.93471 0.97017 1.21189 1.00435 1.00753 0.95418 1.21312 0.97351 0.93523 0.96802 1.21605 1.02651 0.96888 1.01326 1.19207 0.95207 0.83568 0.94950 1.86053 1.71650 1.22861 1.44751 1.22988 0.99626 0.93133 0.85913 1.21147 1.01647 0.92999 0.98149 1.21533 1.04703 0.90422 1.00050 1.21168 0.79085 0.89257 0.80599 1.90742 1.39620 1.76117 1.40122 1.45820 1.53973 1.12024 1.25509 1.21808 1.00242 0.82475 0.96772 1.22208 0.99574 0.89720 0.82125 1.92817 1.96912 1.74083 1.53485 1.23669 0.95036 0.96740 1.02457 1.22309 0.96686 1.00391 0.94293 0.89005 1.22121 0.84349 0.98712 0.94259 1.86407 1.34044 1.86784 1.33012 1.23601 0.96805 0.92574 1.04447 1.20315 1.04200 0.94929 0.97660 0.75464 0.88070 1.22858 1.20795 0.83465 0.82288 0.82919 0.89906 0.89748 0.92076 0.92069 0.85389 0.85517 0.74688 0.91116 0.89123 0.86853 0.90122 0.92559 0.92543 0.75266 0.89200 0.85797 0.86718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.77 12.77 -148.98 -1.90 -3.67 16 2 C -0.08 -0.17 2.82 71.23 0.20 0.03 16 3 Si 0.79 -1.34 29.79 68.60 2.04 0.70 16 4 C -0.08 -0.24 5.39 -19.88 -0.11 -0.34 16 5 C -0.16 0.18 8.67 22.28 0.19 0.37 16 6 C -0.07 0.19 10.04 22.25 0.22 0.41 16 7 C -0.21 0.11 9.04 22.37 0.20 0.31 16 8 C 0.12 0.59 6.69 22.51 0.15 0.75 16 9 O -0.34 -2.13 10.14 -92.44 -0.94 -3.07 16 10 C 0.06 -0.12 4.74 71.98 0.34 0.22 16 11 C -0.10 -0.02 4.87 30.59 0.15 0.13 16 12 C -0.13 0.77 5.70 29.85 0.17 0.94 16 13 C 0.51 0.80 7.83 87.66 0.69 1.49 16 14 O -0.59 -6.92 15.98 -3.03 -0.05 -6.97 16 15 N -0.72 1.99 5.45 -463.05 -2.52 -0.53 16 16 C 0.11 -0.23 5.43 86.38 0.47 0.24 16 17 C 0.08 -0.32 1.73 -10.26 -0.02 -0.34 16 18 F -0.19 0.17 14.80 44.97 0.67 0.83 16 19 C -0.14 0.59 7.07 31.12 0.22 0.81 16 20 C -0.12 0.34 4.20 -10.27 -0.04 0.30 16 21 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 22 C 0.08 -0.15 6.66 71.98 0.48 0.32 16 23 O -0.59 -0.30 13.66 -148.98 -2.04 -2.34 16 24 C -0.14 0.73 7.13 31.12 0.22 0.95 16 25 C -0.15 -1.02 9.55 22.37 0.21 -0.81 16 26 H 0.40 -2.10 8.70 -74.05 -0.64 -2.75 16 27 H 0.10 0.40 7.96 -2.39 -0.02 0.38 16 28 H -0.30 -1.76 7.11 99.48 0.71 -1.05 16 29 H -0.28 -0.61 7.11 99.48 0.71 0.10 16 30 H 0.15 -0.84 4.87 -2.91 -0.01 -0.86 16 31 H 0.16 -1.37 8.06 -2.91 -0.02 -1.40 16 32 H 0.15 -0.92 6.30 -2.91 -0.02 -0.94 16 33 H 0.08 -0.50 7.65 -2.39 -0.02 -0.51 16 34 H 0.08 -0.52 7.67 -2.39 -0.02 -0.54 16 35 H 0.06 0.29 8.10 -2.39 -0.02 0.27 16 36 H 0.06 0.28 8.10 -2.39 -0.02 0.26 16 37 H 0.13 -1.46 8.14 -2.38 -0.02 -1.48 16 38 H 0.13 -1.40 8.14 -2.39 -0.02 -1.42 16 39 H 0.42 -3.05 8.03 -92.71 -0.74 -3.80 16 40 H 0.07 0.02 8.14 -2.39 -0.02 0.01 16 41 H 0.09 -0.18 7.84 -2.39 -0.02 -0.20 16 42 H 0.11 -0.69 7.89 -2.39 -0.02 -0.71 16 43 H 0.08 -0.23 8.10 -2.39 -0.02 -0.25 16 44 H 0.06 -0.10 6.31 -2.39 -0.02 -0.12 16 45 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 46 H 0.40 -3.02 9.12 -74.06 -0.68 -3.70 16 47 H 0.09 -0.49 8.10 -2.39 -0.02 -0.51 16 48 H 0.12 -1.00 8.10 -2.39 -0.02 -1.02 16 49 H 0.11 1.06 8.06 -2.91 -0.02 1.04 16 Total: 0.00 -26.81 404.01 -2.02 -28.83 By element: Atomic # 1 Polarization: -18.56 SS G_CDS: -1.03 Total: -19.59 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 3.75 Total: 5.79 kcal Atomic # 7 Polarization: 1.99 SS G_CDS: -2.52 Total: -0.53 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -4.92 Total: -16.04 kcal Atomic # 9 Polarization: 0.17 SS G_CDS: 0.67 Total: 0.83 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: 2.04 Total: 0.70 kcal Total: -26.81 -2.02 -28.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_4549616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.388 kcal (2) G-P(sol) polarization free energy of solvation -26.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds