Wall clock time and date at job start Sun Mar 7 2021 09:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.46896 * 2 1 4 4 C 1.50699 * 109.47071 * 240.00322 * 2 1 3 5 5 C 1.38245 * 119.97556 * 120.02192 * 4 2 1 6 6 C 1.38286 * 120.11203 * 179.97438 * 5 4 2 7 7 C 1.38119 * 120.05454 * 359.97438 * 6 5 4 8 8 C 1.38755 * 119.94732 * 0.02562 * 7 6 5 9 9 O 1.35901 * 120.05737 * 180.02562 * 8 7 6 10 10 C 1.42905 * 117.00063 * 359.95939 * 9 8 7 11 11 C 1.50692 * 109.47141 * 180.02562 * 10 9 8 12 12 C 1.38337 * 119.92555 * 269.71895 * 11 10 9 13 13 C 1.38384 * 120.29523 * 179.76701 * 12 11 10 14 14 C 1.37931 * 120.14130 * 0.51314 * 13 12 11 15 15 C 1.39602 * 119.85665 * 359.74346 * 14 13 12 16 16 C 1.47842 * 120.14379 * 179.97438 * 15 14 13 17 17 O 1.21552 * 119.99533 * 180.02562 * 16 15 14 18 18 N 1.34771 * 120.00492 * 0.02753 * 16 15 14 19 19 C 1.46500 * 120.00202 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47213 * 179.97438 * 19 18 16 21 21 F 1.39904 * 112.84534 * 48.80512 * 20 19 18 22 22 C 1.53778 * 113.61662 * 180.02562 * 20 19 18 23 23 C 1.53779 * 87.08329 * 139.98248 * 22 20 19 24 24 H 1.09000 * 113.61262 * 220.02015 * 23 22 20 25 25 C 1.53000 * 113.61042 * 89.20216 * 23 22 20 26 26 O 1.42902 * 109.46630 * 175.00115 * 25 23 22 27 27 C 1.53778 * 113.61717 * 277.50087 * 20 19 18 28 28 C 1.37984 * 119.93299 * 90.00120 * 11 10 9 29 29 C 1.38165 * 119.96726 * 299.99892 * 4 2 1 30 30 H 0.96705 * 114.00328 * 59.99440 * 1 2 3 31 31 H 1.08993 * 109.47028 * 120.00314 * 2 1 3 32 32 H 1.48502 * 110.00282 * 60.00481 * 3 2 1 33 33 H 1.48503 * 109.99750 * 181.32057 * 3 2 1 34 34 H 1.07999 * 119.94068 * 359.97438 * 5 4 2 35 35 H 1.08000 * 119.97222 * 180.02562 * 6 5 4 36 36 H 1.08010 * 120.02819 * 180.02562 * 7 6 5 37 37 H 1.09007 * 109.46892 * 300.00164 * 10 9 8 38 38 H 1.08998 * 109.46929 * 59.99815 * 10 9 8 39 39 H 1.08006 * 119.85247 * 0.02562 * 12 11 10 40 40 H 1.08003 * 119.93108 * 180.26130 * 13 12 11 41 41 H 1.08004 * 120.07340 * 179.72462 * 14 13 12 42 42 H 0.97000 * 119.99818 * 359.97438 * 18 16 15 43 43 H 1.09000 * 109.47506 * 299.99955 * 19 18 16 44 44 H 1.09000 * 109.46758 * 59.99841 * 19 18 16 45 45 H 1.09008 * 113.61609 * 254.53798 * 22 20 19 46 46 H 1.09006 * 113.61424 * 25.34810 * 22 20 19 47 47 H 1.09007 * 109.47286 * 294.99726 * 25 23 22 48 48 H 1.08997 * 109.47694 * 54.99851 * 25 23 22 49 49 H 0.96708 * 113.99916 * 179.97438 * 26 25 23 50 50 H 1.08998 * 113.61212 * 334.56643 * 27 20 19 51 51 H 1.09003 * 113.61434 * 105.46771 * 27 20 19 52 52 H 1.07997 * 120.06833 * 359.97438 * 28 11 10 53 53 H 1.07994 * 120.03283 * 359.72355 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7264 -0.0381 -2.1399 6 6 3.1894 -0.6873 -3.2697 7 6 2.8586 -2.0098 -3.4920 8 6 2.0607 -2.6868 -2.5808 9 8 1.7343 -3.9882 -2.7970 10 6 2.2468 -4.5970 -3.9839 11 6 1.7838 -6.0294 -4.0539 12 6 2.5535 -7.0316 -3.4911 13 6 2.1333 -8.3490 -3.5466 14 6 0.9480 -8.6721 -4.1737 15 6 0.1691 -7.6661 -4.7483 16 6 -1.1022 -8.0053 -5.4225 17 8 -1.7781 -7.1273 -5.9223 18 7 -1.5118 -9.2878 -5.4829 19 6 -2.7718 -9.6238 -6.1504 20 6 -3.0000 -11.1350 -6.0785 21 9 -2.8253 -11.6499 -4.7894 22 6 -4.3026 -11.5942 -6.7545 23 6 -3.5090 -12.7988 -7.2874 24 1 -3.7575 -13.0653 -8.3147 25 6 -3.5148 -14.0027 -6.3432 26 8 -2.8553 -15.1038 -6.9714 27 6 -2.2509 -11.9236 -7.1656 28 6 0.5960 -6.3391 -4.6841 29 6 1.5971 -2.0331 -1.4485 30 1 -0.3934 0.4418 -0.7650 31 1 1.7923 -0.5139 0.8899 32 1 1.5615 2.4679 1.2085 33 1 3.5346 1.7703 -0.0322 34 1 2.9865 0.9959 -1.9676 35 1 3.8107 -0.1601 -3.9785 36 1 3.2208 -2.5166 -4.3744 37 1 1.8826 -4.0548 -4.8567 38 1 3.3362 -4.5673 -3.9662 39 1 3.4845 -6.7844 -3.0025 40 1 2.7368 -9.1263 -3.1016 41 1 0.6233 -9.7011 -4.2203 42 1 -0.9722 -9.9885 -5.0843 43 1 -3.5943 -9.1078 -5.6551 44 1 -2.7240 -9.3132 -7.1941 45 1 -5.0882 -11.8662 -6.0493 46 1 -4.6507 -10.9186 -7.5359 47 1 -2.9929 -13.7443 -5.4217 48 1 -4.5437 -14.2788 -6.1127 49 1 -2.8211 -15.9034 -6.4286 50 1 -2.0375 -11.3388 -8.0603 51 1 -1.3794 -12.4616 -6.7924 52 1 -0.0018 -5.5561 -5.1267 53 1 0.9800 -2.5593 -0.7354 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_4549630.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:31 Heat of formation + Delta-G solvation = -116.805756 kcal Electronic energy + Delta-G solvation = -36082.617806 eV Core-core repulsion = 30994.562139 eV Total energy + Delta-G solvation = -5088.055668 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.172 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -48.96421 -41.57865 -41.18342 -40.02994 -39.62595 -38.87001 -37.25926 -37.22740 -35.82105 -33.60199 -32.46281 -32.35027 -31.11025 -30.19608 -27.81218 -27.18399 -26.96667 -26.61136 -24.76215 -23.66454 -23.20465 -22.83270 -22.19270 -21.38459 -20.14621 -19.24086 -19.22142 -18.41747 -17.86102 -17.68260 -17.44038 -17.20833 -17.11292 -16.97109 -16.87595 -16.74298 -16.31144 -16.16492 -16.03081 -15.72665 -15.51330 -15.37372 -15.30412 -15.06370 -14.86138 -14.75061 -14.49046 -14.38192 -14.20139 -13.89667 -13.81265 -13.50737 -13.47484 -13.44508 -13.19198 -12.92679 -12.82316 -12.60696 -12.47837 -12.19620 -11.99925 -11.98239 -11.82033 -11.65028 -11.63286 -11.33001 -11.17352 -10.80998 -10.52486 -10.43110 -10.07490 -10.02136 -9.92606 -9.26891 -4.98896 -0.32173 0.11495 0.20058 0.39244 1.29528 1.61023 1.64490 1.86310 1.95027 2.22605 2.67064 2.82992 2.98374 3.08797 3.14782 3.22978 3.44301 3.46441 3.52837 3.55874 3.66905 3.74022 3.83561 3.87727 3.96557 4.06091 4.07375 4.15817 4.19303 4.22319 4.24372 4.35476 4.39199 4.40386 4.43853 4.51547 4.53947 4.54870 4.64372 4.64415 4.67786 4.69410 4.85035 4.85591 4.90968 4.97311 5.02670 5.12815 5.16849 5.24251 5.26667 5.27846 5.34343 5.37429 5.43943 5.70742 5.73727 6.27009 6.36087 6.73044 6.81959 6.96856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.083 4.083 3 Si 0.790 3.210 4 C -0.084 4.084 5 C -0.159 4.159 6 C -0.072 4.072 7 C -0.208 4.208 8 C 0.116 3.884 9 O -0.329 6.329 10 C 0.099 3.901 11 C -0.113 4.113 12 C -0.068 4.068 13 C -0.126 4.126 14 C -0.071 4.071 15 C -0.156 4.156 16 C 0.559 3.441 17 O -0.576 6.576 18 N -0.713 5.713 19 C 0.112 3.888 20 C 0.079 3.921 21 F -0.194 7.194 22 C -0.134 4.134 23 C -0.117 4.117 24 H 0.094 0.906 25 C 0.083 3.917 26 O -0.593 6.593 27 C -0.142 4.142 28 C -0.051 4.051 29 C -0.148 4.148 30 H 0.395 0.605 31 H 0.104 0.896 32 H -0.300 1.300 33 H -0.280 1.280 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.151 0.849 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.413 0.587 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.126 0.874 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.397 0.603 50 H 0.115 0.885 51 H 0.080 0.920 52 H 0.123 0.877 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.361 -2.232 -3.370 5.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.192 4.192 3 Si 0.695 3.305 4 C -0.085 4.085 5 C -0.177 4.177 6 C -0.090 4.090 7 C -0.226 4.226 8 C 0.071 3.929 9 O -0.243 6.243 10 C 0.025 3.975 11 C -0.113 4.113 12 C -0.086 4.086 13 C -0.143 4.143 14 C -0.089 4.089 15 C -0.159 4.159 16 C 0.348 3.652 17 O -0.457 6.457 18 N -0.365 5.365 19 C -0.012 4.012 20 C 0.060 3.940 21 F -0.174 7.174 22 C -0.172 4.172 23 C -0.135 4.135 24 H 0.112 0.888 25 C 0.005 3.995 26 O -0.402 6.402 27 C -0.179 4.179 28 C -0.070 4.070 29 C -0.167 4.167 30 H 0.245 0.755 31 H 0.121 0.879 32 H -0.228 1.228 33 H -0.207 1.207 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.167 0.833 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.169 0.831 40 H 0.180 0.820 41 H 0.170 0.830 42 H 0.251 0.749 43 H 0.092 0.908 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.145 0.855 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.247 0.753 50 H 0.133 0.867 51 H 0.099 0.901 52 H 0.141 0.859 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.365 -1.100 -3.104 4.708 hybrid contribution 0.002 -1.515 1.006 1.819 sum 3.367 -2.615 -2.097 4.751 Atomic orbital electron populations 1.86469 1.17378 1.82280 1.50441 1.25380 0.85272 1.11670 0.96868 0.93493 0.77840 0.74523 0.84641 1.20221 0.97751 0.93475 0.97017 1.21188 1.00372 1.00738 0.95361 1.21294 0.97371 0.93488 0.96830 1.21585 1.02858 0.97009 1.01150 1.19184 0.95247 0.83483 0.94965 1.86133 1.71614 1.22809 1.43782 1.21746 0.99787 0.89425 0.86516 1.19535 0.95821 0.94649 1.01311 1.21654 0.99703 0.92577 0.94664 1.21503 0.96463 0.97108 0.99255 1.21657 0.93907 0.99186 0.94156 1.19858 0.96124 0.95138 1.04825 1.18495 0.85407 0.82470 0.78836 1.90776 1.57544 1.48591 1.48792 1.45666 1.24263 1.08101 1.58465 1.21898 0.86402 0.93105 0.99799 1.22260 1.00915 0.91527 0.79249 1.92828 1.96297 1.88024 1.40300 1.23596 0.95286 0.97063 1.01257 1.22286 0.96873 0.93278 1.01066 0.88805 1.22123 0.96656 0.86123 0.94583 1.86408 1.80895 1.24723 1.48159 1.23663 0.98002 0.97716 0.98536 1.21177 0.94579 0.95666 0.95617 1.20292 1.04026 0.94844 0.97558 0.75489 0.87885 1.22799 1.20680 0.83437 0.82419 0.83315 0.90057 0.88615 0.83147 0.81957 0.83044 0.74906 0.90821 0.88395 0.89158 0.85543 0.92681 0.92505 0.75290 0.86669 0.90097 0.85917 0.86560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.86 12.77 -148.98 -1.90 -3.76 16 2 C -0.08 -0.16 2.82 71.24 0.20 0.04 16 3 Si 0.79 -1.22 29.79 68.60 2.04 0.83 16 4 C -0.08 -0.24 5.39 -19.88 -0.11 -0.34 16 5 C -0.16 0.12 8.67 22.28 0.19 0.31 16 6 C -0.07 0.13 10.04 22.25 0.22 0.35 16 7 C -0.21 -0.09 9.04 22.37 0.20 0.11 16 8 C 0.12 0.62 6.69 22.51 0.15 0.77 16 9 O -0.33 -2.11 10.12 -92.44 -0.94 -3.04 16 10 C 0.10 0.02 4.86 71.23 0.35 0.37 16 11 C -0.11 -0.21 5.50 -19.90 -0.11 -0.32 16 12 C -0.07 0.12 9.69 22.33 0.22 0.34 16 13 C -0.13 0.47 10.03 22.23 0.22 0.69 16 14 C -0.07 0.14 9.54 22.53 0.21 0.35 16 15 C -0.16 -0.64 5.87 -20.09 -0.12 -0.76 16 16 C 0.56 3.92 7.77 86.79 0.67 4.60 16 17 O -0.58 -8.60 16.35 -3.88 -0.06 -8.66 16 18 N -0.71 -0.54 5.42 -465.98 -2.52 -3.07 16 19 C 0.11 -0.07 5.37 86.38 0.46 0.39 16 20 C 0.08 -0.23 1.66 -10.27 -0.02 -0.25 16 21 F -0.19 -0.12 15.02 44.97 0.68 0.56 16 22 C -0.13 0.69 7.13 31.12 0.22 0.91 16 23 C -0.12 0.32 4.19 -10.28 -0.04 0.28 16 24 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 25 C 0.08 -0.13 6.66 71.98 0.48 0.35 16 26 O -0.59 -0.43 13.66 -148.98 -2.03 -2.47 16 27 C -0.14 0.54 7.07 31.11 0.22 0.76 16 28 C -0.05 -0.28 9.24 22.53 0.21 -0.07 16 29 C -0.15 -0.98 9.55 22.37 0.21 -0.76 16 30 H 0.40 -1.92 8.70 -74.05 -0.64 -2.56 16 31 H 0.10 0.37 7.96 -2.39 -0.02 0.35 16 32 H -0.30 -1.78 7.11 99.48 0.71 -1.08 16 33 H -0.28 -0.62 7.11 99.48 0.71 0.09 16 34 H 0.15 -0.79 4.87 -2.91 -0.01 -0.80 16 35 H 0.16 -1.19 8.06 -2.91 -0.02 -1.21 16 36 H 0.15 -0.61 6.30 -2.91 -0.02 -0.63 16 37 H 0.08 -0.12 7.60 -2.38 -0.02 -0.14 16 38 H 0.10 -0.42 7.60 -2.39 -0.02 -0.44 16 39 H 0.15 -0.91 8.06 -2.91 -0.02 -0.93 16 40 H 0.16 -1.52 8.06 -2.91 -0.02 -1.54 16 41 H 0.15 -1.15 6.41 -2.91 -0.02 -1.16 16 42 H 0.41 -1.47 6.22 -92.71 -0.58 -2.05 16 43 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.10 -0.16 7.94 -2.39 -0.02 -0.18 16 45 H 0.09 -0.46 8.10 -2.38 -0.02 -0.48 16 46 H 0.13 -1.04 8.10 -2.38 -0.02 -1.06 16 47 H 0.06 -0.07 6.32 -2.38 -0.02 -0.08 16 48 H 0.06 -0.18 8.14 -2.39 -0.02 -0.19 16 49 H 0.40 -2.90 9.12 -74.05 -0.68 -3.57 16 50 H 0.11 -0.68 7.96 -2.39 -0.02 -0.70 16 51 H 0.08 -0.20 8.10 -2.39 -0.02 -0.22 16 52 H 0.12 0.96 7.65 -2.91 -0.02 0.94 16 53 H 0.12 1.03 8.06 -2.91 -0.02 1.01 16 Total: 0.00 -26.69 439.74 -1.56 -28.25 By element: Atomic # 1 Polarization: -15.88 SS G_CDS: -0.87 Total: -16.75 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 4.06 Total: 8.11 kcal Atomic # 7 Polarization: -0.54 SS G_CDS: -2.52 Total: -3.07 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -4.94 Total: -17.93 kcal Atomic # 9 Polarization: -0.12 SS G_CDS: 0.68 Total: 0.56 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: 2.04 Total: 0.83 kcal Total: -26.69 -1.56 -28.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_4549630.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.554 kcal (2) G-P(sol) polarization free energy of solvation -26.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds