Wall clock time and date at job start Sun Mar 7 2021 09:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86295 * 109.47342 * 2 1 4 4 C 1.50702 * 109.46824 * 119.99890 * 2 1 3 5 5 C 1.38246 * 119.97407 * 244.99655 * 4 2 1 6 6 C 1.38282 * 120.11259 * 180.02562 * 5 4 2 7 7 C 1.38128 * 120.05913 * 0.02562 * 6 5 4 8 8 C 1.38752 * 119.93887 * 359.97203 * 7 6 5 9 9 O 1.35899 * 120.05116 * 180.02562 * 8 7 6 10 10 C 1.42897 * 117.00442 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47544 * 179.97438 * 10 9 8 12 12 O 1.21281 * 119.99785 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00326 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00463 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47391 * 180.02562 * 14 13 11 16 16 F 1.39898 * 112.90974 * 316.25376 * 15 14 13 17 17 C 1.53962 * 113.66529 * 87.55384 * 15 14 13 18 18 C 1.53782 * 87.11063 * 139.88900 * 17 15 14 19 19 H 1.09001 * 113.61250 * 220.08565 * 18 17 15 20 20 C 1.53000 * 113.68890 * 89.20012 * 18 17 15 21 21 O 1.42894 * 109.47491 * 87.46084 * 20 18 17 22 22 C 1.53781 * 87.08260 * 334.63747 * 18 17 15 23 23 C 1.38168 * 119.97313 * 65.25653 * 4 2 1 24 24 H 0.96696 * 114.00005 * 300.00425 * 1 2 3 25 25 H 1.08999 * 109.47527 * 239.99676 * 2 1 3 26 26 H 1.48498 * 110.00140 * 299.99675 * 3 2 1 27 27 H 1.48499 * 110.00157 * 61.31924 * 3 2 1 28 28 H 1.07997 * 119.94000 * 0.02562 * 5 4 2 29 29 H 1.08004 * 119.97346 * 179.97438 * 6 5 4 30 30 H 1.07997 * 120.03096 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.47263 * 59.99907 * 10 9 8 32 32 H 1.08996 * 109.46754 * 300.00036 * 10 9 8 33 33 H 0.97000 * 119.99857 * 0.02562 * 13 11 10 34 34 H 1.09002 * 109.47287 * 60.00002 * 14 13 11 35 35 H 1.09004 * 109.47020 * 300.00283 * 14 13 11 36 36 H 1.08997 * 113.53543 * 25.33574 * 17 15 14 37 37 H 1.08998 * 113.73879 * 254.47172 * 17 15 14 38 38 H 1.09004 * 109.46739 * 207.46553 * 20 18 17 39 39 H 1.08999 * 109.46919 * 327.46130 * 20 18 17 40 40 H 0.96697 * 114.00263 * 179.97438 * 21 20 18 41 41 H 1.09002 * 113.61445 * 139.98212 * 22 18 17 42 42 H 1.09002 * 113.61408 * 270.79943 * 22 18 17 43 43 H 1.07998 * 120.02632 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 2.6387 -0.0117 2.1910 6 6 3.1013 -0.6608 3.3210 7 6 2.8581 -2.0097 3.4924 8 6 2.1482 -2.7131 2.5299 9 8 1.9071 -4.0401 2.6965 10 6 2.4133 -4.6471 3.8870 11 6 2.0514 -6.1099 3.8982 12 8 1.4222 -6.5860 2.9771 13 7 2.4276 -6.8894 4.9313 14 6 2.0762 -8.3115 4.9419 15 6 2.6181 -8.9613 6.2167 16 9 3.9259 -8.5651 6.5163 17 6 1.6558 -8.8684 7.4149 18 6 2.0688 -10.3092 7.7588 19 1 1.2400 -10.9328 8.0938 20 6 3.2876 -10.3961 8.6795 21 8 2.8605 -10.3393 10.0420 22 6 2.4083 -10.4839 6.2691 23 6 1.6890 -2.0607 1.3953 24 1 -0.3933 0.4417 0.7650 25 1 1.7924 -0.5139 -0.8899 26 1 1.5616 2.4678 -1.2085 27 1 1.5880 2.4585 1.2242 28 1 2.8303 1.0428 2.0586 29 1 3.6541 -0.1129 4.0697 30 1 3.2200 -2.5162 4.3749 31 1 1.9765 -4.1585 4.7580 32 1 3.4977 -4.5405 3.9164 33 1 2.9311 -6.5087 5.6679 34 1 2.5127 -8.8002 4.0708 35 1 0.9918 -8.4181 4.9129 36 1 0.6092 -8.7712 7.1261 37 1 1.9576 -8.1369 8.1644 38 1 3.8110 -11.3356 8.5016 39 1 3.9584 -9.5619 8.4740 40 1 3.5826 -10.3897 10.6830 41 1 3.3190 -11.0564 6.0931 42 1 1.5679 -10.8299 5.6674 43 1 1.1396 -2.6069 0.6428 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:04:02 Heat of formation + Delta-G solvation = -143.949451 kcal Electronic energy + Delta-G solvation = -26867.906512 eV Core-core repulsion = 22602.653605 eV Total energy + Delta-G solvation = -4265.252907 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.95941 -41.58838 -40.68346 -39.82932 -39.01366 -37.38347 -37.19448 -35.74901 -32.51477 -31.92343 -30.74905 -28.94877 -27.09996 -26.94074 -26.43175 -23.69953 -23.07696 -22.51006 -21.65611 -20.15107 -19.37132 -18.95904 -18.37978 -17.93466 -17.57469 -17.42705 -17.13595 -16.99054 -16.88283 -16.54726 -16.24095 -15.96146 -15.71474 -15.53693 -15.34327 -15.14723 -14.85868 -14.65079 -14.32131 -14.15426 -14.00178 -13.81086 -13.51305 -13.41516 -13.18209 -13.02227 -12.62748 -12.46324 -12.13647 -12.01828 -11.81970 -11.64108 -11.56920 -11.32752 -11.09954 -10.80609 -10.66752 -10.35670 -9.95750 -9.30553 -4.90915 0.19314 0.37937 1.26020 1.34203 1.41342 1.61156 1.96241 2.50084 2.65139 2.98253 3.08521 3.14418 3.23787 3.40301 3.46059 3.50484 3.65448 3.82526 3.89690 3.97406 4.02592 4.11391 4.20056 4.23620 4.34778 4.36052 4.41043 4.53034 4.53644 4.55016 4.64553 4.64824 4.68938 4.85442 4.91602 4.97163 5.01647 5.15663 5.23215 5.28248 5.35967 5.43854 5.67534 6.18741 6.36072 6.46073 6.82900 6.97889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.095 4.095 3 Si 0.786 3.214 4 C -0.081 4.081 5 C -0.158 4.158 6 C -0.071 4.071 7 C -0.202 4.202 8 C 0.113 3.887 9 O -0.322 6.322 10 C 0.039 3.961 11 C 0.515 3.485 12 O -0.569 6.569 13 N -0.711 5.711 14 C 0.113 3.887 15 C 0.083 3.917 16 F -0.192 7.192 17 C -0.142 4.142 18 C -0.118 4.118 19 H 0.092 0.908 20 C 0.083 3.917 21 O -0.594 6.594 22 C -0.136 4.136 23 C -0.148 4.148 24 H 0.386 0.614 25 H 0.119 0.881 26 H -0.305 1.305 27 H -0.275 1.275 28 H 0.148 0.852 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.419 0.581 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.124 0.876 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.065 0.917 6.747 9.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.202 4.202 3 Si 0.690 3.310 4 C -0.082 4.082 5 C -0.175 4.175 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.068 3.932 9 O -0.236 6.236 10 C -0.039 4.039 11 C 0.301 3.699 12 O -0.448 6.448 13 N -0.365 5.365 14 C -0.011 4.011 15 C 0.064 3.936 16 F -0.172 7.172 17 C -0.179 4.179 18 C -0.137 4.137 19 H 0.110 0.890 20 C 0.006 3.994 21 O -0.403 6.403 22 C -0.174 4.174 23 C -0.167 4.167 24 H 0.236 0.764 25 H 0.136 0.864 26 H -0.234 1.234 27 H -0.201 1.201 28 H 0.165 0.835 29 H 0.180 0.820 30 H 0.177 0.823 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.257 0.743 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.247 0.753 41 H 0.109 0.891 42 H 0.142 0.858 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.852 0.985 5.154 7.147 hybrid contribution -0.342 -0.379 0.968 1.094 sum 4.511 0.606 6.121 7.628 Atomic orbital electron populations 1.86584 1.18642 1.80567 1.50117 1.25467 0.83473 1.12900 0.98399 0.93835 0.90009 0.70726 0.76460 1.20123 0.98162 0.92912 0.96960 1.21252 1.00586 1.00875 0.94834 1.21326 0.96842 0.93479 0.97174 1.21634 1.03490 0.96391 1.00532 1.19199 0.96361 0.82261 0.95383 1.86115 1.74632 1.20917 1.41904 1.22691 1.02611 0.89925 0.88681 1.20511 0.78859 0.88654 0.81833 1.90773 1.40906 1.75951 1.37130 1.45550 1.57888 1.09597 1.23489 1.21877 1.01818 0.80295 0.97087 1.22242 0.78923 0.97294 0.95112 1.92825 1.38322 1.91923 1.94128 1.23712 1.00367 0.97662 0.96205 1.22303 0.98864 0.98053 0.94475 0.89000 1.22120 0.95131 1.00851 0.81341 1.86405 1.39730 1.97369 1.16768 1.23603 1.05033 0.92877 0.95865 1.20312 1.04245 0.94583 0.97588 0.76442 0.86352 1.23372 1.20089 0.83457 0.82030 0.82302 0.85693 0.85690 0.74328 0.90698 0.88760 0.86815 0.89998 0.92546 0.92511 0.75257 0.89115 0.85758 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.05 12.84 -148.98 -1.91 -4.97 16 2 C -0.09 -0.17 2.80 71.24 0.20 0.03 16 3 Si 0.79 -1.47 29.88 68.60 2.05 0.58 16 4 C -0.08 -0.19 5.35 -19.88 -0.11 -0.29 16 5 C -0.16 0.30 8.67 22.28 0.19 0.49 16 6 C -0.07 0.28 10.04 22.25 0.22 0.50 16 7 C -0.20 0.46 9.04 22.37 0.20 0.66 16 8 C 0.11 0.52 6.69 22.51 0.15 0.67 16 9 O -0.32 -2.37 9.67 -73.37 -0.71 -3.08 16 10 C 0.04 -0.08 5.22 71.24 0.37 0.29 16 11 C 0.52 1.79 7.91 87.66 0.69 2.48 16 12 O -0.57 -8.37 16.50 16.00 0.26 -8.11 16 13 N -0.71 2.06 5.45 -463.07 -2.52 -0.46 16 14 C 0.11 -0.29 5.43 86.38 0.47 0.18 16 15 C 0.08 -0.38 1.74 -10.20 -0.02 -0.40 16 16 F -0.19 0.33 14.82 44.97 0.67 1.00 16 17 C -0.14 0.69 7.08 31.18 0.22 0.91 16 18 C -0.12 0.41 4.19 -10.27 -0.04 0.36 16 19 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 20 C 0.08 -0.20 6.66 71.98 0.48 0.28 16 21 O -0.59 -0.07 13.66 -148.98 -2.03 -2.11 16 22 C -0.14 0.81 7.12 31.12 0.22 1.03 16 23 C -0.15 -0.99 9.63 22.37 0.22 -0.78 16 24 H 0.39 -0.27 8.70 -74.06 -0.64 -0.92 16 25 H 0.12 0.15 7.96 -2.39 -0.02 0.13 16 26 H -0.31 -1.88 7.11 99.48 0.71 -1.17 16 27 H -0.27 -0.15 7.01 99.48 0.70 0.55 16 28 H 0.15 -0.90 4.84 -2.91 -0.01 -0.91 16 29 H 0.16 -1.64 8.06 -2.91 -0.02 -1.66 16 30 H 0.16 -1.43 6.30 -2.91 -0.02 -1.44 16 31 H 0.13 -1.06 7.66 -2.39 -0.02 -1.08 16 32 H 0.13 -1.03 7.66 -2.39 -0.02 -1.05 16 33 H 0.42 -3.48 8.03 -92.71 -0.74 -4.22 16 34 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.09 -0.24 7.84 -2.38 -0.02 -0.26 16 36 H 0.11 -0.76 7.90 -2.39 -0.02 -0.78 16 37 H 0.08 -0.30 8.10 -2.39 -0.02 -0.32 16 38 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H 0.06 -0.14 6.33 -2.39 -0.02 -0.15 16 40 H 0.40 -3.17 9.12 -74.06 -0.68 -3.84 16 41 H 0.09 -0.55 8.10 -2.39 -0.02 -0.57 16 42 H 0.12 -1.07 8.10 -2.39 -0.02 -1.09 16 43 H 0.11 1.12 8.06 -2.91 -0.02 1.10 16 Total: 0.00 -27.22 361.65 -1.69 -28.91 By element: Atomic # 1 Polarization: -17.24 SS G_CDS: -0.96 Total: -18.21 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 3.47 Total: 6.43 kcal Atomic # 7 Polarization: 2.06 SS G_CDS: -2.52 Total: -0.46 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -4.39 Total: -18.26 kcal Atomic # 9 Polarization: 0.33 SS G_CDS: 0.67 Total: 1.00 kcal Atomic # 14 Polarization: -1.47 SS G_CDS: 2.05 Total: 0.58 kcal Total: -27.22 -1.69 -28.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.038 kcal (2) G-P(sol) polarization free energy of solvation -27.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds