Wall clock time and date at job start Sun Mar 7 2021 09:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35984 * 116.99687 * 2 1 4 4 C 1.38678 * 119.99794 * 180.02562 * 3 2 1 5 5 C 1.38157 * 119.99844 * 179.74401 * 4 3 2 6 6 C 1.50695 * 119.99847 * 180.24723 * 5 4 3 7 7 O 1.42899 * 109.47326 * 255.25838 * 6 5 4 8 8 Si 1.86297 * 109.47397 * 15.26063 * 6 5 4 9 9 C 1.38677 * 120.00013 * 0.50813 * 5 4 3 10 10 O 1.35977 * 119.99992 * 179.74171 * 9 5 4 11 11 C 1.42908 * 117.00034 * 179.72641 * 10 9 5 12 12 C 1.50698 * 109.47052 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99976 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99827 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00034 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47132 * 179.97438 * 15 14 12 17 17 F 1.39898 * 112.85098 * 48.79918 * 16 15 14 18 18 C 1.53781 * 113.61406 * 179.97438 * 16 15 14 19 19 C 1.53786 * 87.17350 * 140.02181 * 18 16 15 20 20 H 1.09000 * 113.61138 * 220.06261 * 19 18 16 21 21 C 1.52993 * 113.61559 * 89.15694 * 19 18 16 22 22 O 1.42906 * 109.47197 * 175.00064 * 21 19 18 23 23 C 1.53782 * 113.68747 * 277.53280 * 16 15 14 24 24 C 1.38719 * 119.99554 * 359.46728 * 9 5 4 25 25 C 1.38106 * 120.00444 * 0.27640 * 24 9 5 26 26 H 1.08996 * 109.47084 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46906 * 299.99736 * 1 2 3 28 28 H 1.08997 * 109.47383 * 59.99568 * 1 2 3 29 29 H 1.07995 * 119.99964 * 359.97438 * 4 3 2 30 30 H 1.09001 * 109.47000 * 135.26077 * 6 5 4 31 31 H 0.96696 * 114.00259 * 60.00184 * 7 6 5 32 32 H 1.48504 * 110.00242 * 179.97438 * 8 6 5 33 33 H 1.48508 * 109.99833 * 301.31761 * 8 6 5 34 34 H 1.08995 * 109.46567 * 59.99865 * 11 10 9 35 35 H 1.08998 * 109.46939 * 299.99877 * 11 10 9 36 36 H 0.96998 * 120.00059 * 359.97438 * 14 12 11 37 37 H 1.08992 * 109.47451 * 59.99363 * 15 14 12 38 38 H 1.08998 * 109.46738 * 299.99199 * 15 14 12 39 39 H 1.09002 * 113.61445 * 254.61180 * 18 16 15 40 40 H 1.09002 * 113.61408 * 25.42911 * 18 16 15 41 41 H 1.08998 * 109.47144 * 294.99941 * 21 19 18 42 42 H 1.08996 * 109.47235 * 55.00309 * 21 19 18 43 43 H 0.96700 * 114.00004 * 180.02562 * 22 21 19 44 44 H 1.08997 * 113.61668 * 334.55355 * 23 16 15 45 45 H 1.08998 * 113.61674 * 105.37864 * 23 16 15 46 46 H 1.07999 * 119.99582 * 180.29844 * 24 9 5 47 47 H 1.08006 * 120.00450 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4312 1.2843 -0.0005 5 6 4.0583 2.5153 -0.0059 6 6 5.5632 2.5942 -0.0121 7 8 6.0262 2.9644 1.2881 8 14 6.2703 0.9335 -0.4734 9 6 3.3030 3.6783 -0.0001 10 8 3.9203 4.8899 0.0000 11 6 3.0803 6.0460 0.0001 12 6 3.9345 7.2875 -0.0005 13 8 5.1435 7.1918 -0.0005 14 7 3.3549 8.5043 0.0000 15 6 4.1852 9.7112 -0.0012 16 6 3.2859 10.9490 -0.0009 17 9 2.2803 10.8897 0.9699 18 6 4.0637 12.2756 -0.0015 19 6 3.0095 12.8053 -0.9879 20 1 3.4276 13.4200 -1.7852 21 6 1.8033 13.4539 -0.3061 22 8 0.9408 14.0157 -1.2974 23 6 2.7722 11.3397 -1.3968 24 6 1.9177 3.6056 0.0000 25 6 1.2908 2.3750 0.0000 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 4.0193 0.3786 -0.0005 30 1 5.8849 3.3405 -0.7385 31 1 5.7759 2.3439 1.9862 32 1 7.7539 0.9982 -0.4837 33 1 5.8131 -0.0989 0.4913 34 1 2.4511 6.0378 0.8901 35 1 2.4511 6.0380 -0.8899 36 1 2.3879 8.5808 0.0003 37 1 4.8135 9.7192 -0.8917 38 1 4.8154 9.7195 0.8882 39 1 4.0563 12.7864 0.9614 40 1 5.0624 12.1960 -0.4307 41 1 1.2595 12.7006 0.2638 42 1 2.1455 14.2410 0.3659 43 1 0.1533 14.4451 -0.9360 44 1 3.4172 11.0045 -2.2090 45 1 1.7230 11.0940 -1.5606 46 1 1.3295 4.5113 -0.0004 47 1 0.2122 2.3184 -0.0004 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_4974302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:04:05 Heat of formation + Delta-G solvation = -176.137657 kcal Electronic energy + Delta-G solvation = -31596.005356 eV Core-core repulsion = 26855.136853 eV Total energy + Delta-G solvation = -4740.868503 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.156 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -48.95080 -41.79594 -40.91849 -39.97950 -39.64662 -38.30690 -37.22450 -36.97077 -35.71358 -32.84709 -31.50241 -30.54648 -29.01782 -27.96262 -27.08407 -26.64853 -26.58375 -23.73849 -22.83858 -22.44335 -21.76072 -20.15308 -19.66949 -18.96154 -18.76551 -18.33697 -17.86084 -17.57575 -17.35514 -17.26443 -16.93550 -16.70536 -16.59938 -16.15285 -16.05421 -15.98670 -15.61152 -15.48113 -15.33707 -15.25764 -14.97613 -14.62523 -14.33978 -14.27510 -14.01246 -13.77522 -13.51157 -13.47449 -13.42952 -13.19025 -13.02169 -12.51804 -12.46497 -12.44072 -11.89935 -11.80789 -11.75671 -11.59413 -11.43184 -11.32483 -11.06279 -10.79986 -10.56795 -10.33724 -10.13360 -8.80108 -4.95738 0.05881 0.36003 1.26677 1.37967 1.42119 1.55646 1.90936 2.34274 2.53198 2.55837 2.99167 3.09739 3.15575 3.24614 3.41455 3.46811 3.51038 3.66841 3.74905 3.88701 3.93976 4.04879 4.09661 4.13266 4.20299 4.24861 4.36126 4.41245 4.42963 4.43508 4.48231 4.54258 4.55671 4.65183 4.68582 4.69007 4.78509 4.85873 4.91772 4.98801 5.03572 5.14882 5.17085 5.22078 5.28693 5.42981 6.14523 6.33214 6.45351 6.51255 6.82792 7.01714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.088 3.912 4 C -0.125 4.125 5 C -0.117 4.117 6 C -0.077 4.077 7 O -0.544 6.544 8 Si 0.775 3.225 9 C 0.101 3.899 10 O -0.308 6.308 11 C 0.037 3.963 12 C 0.515 3.485 13 O -0.566 6.566 14 N -0.711 5.711 15 C 0.114 3.886 16 C 0.082 3.918 17 F -0.193 7.193 18 C -0.136 4.136 19 C -0.117 4.117 20 H 0.093 0.907 21 C 0.083 3.917 22 O -0.594 6.594 23 C -0.141 4.141 24 C -0.164 4.164 25 C -0.158 4.158 26 H 0.113 0.887 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.107 0.893 31 H 0.382 0.618 32 H -0.300 1.300 33 H -0.273 1.273 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.418 0.582 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.397 0.603 44 H 0.114 0.886 45 H 0.082 0.918 46 H 0.164 0.836 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.824 1.663 -1.872 9.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.043 3.957 4 C -0.143 4.143 5 C -0.118 4.118 6 C -0.185 4.185 7 O -0.352 6.352 8 Si 0.679 3.321 9 C 0.056 3.944 10 O -0.222 6.222 11 C -0.041 4.041 12 C 0.301 3.699 13 O -0.444 6.444 14 N -0.366 5.366 15 C -0.010 4.010 16 C 0.064 3.936 17 F -0.173 7.173 18 C -0.174 4.174 19 C -0.136 4.136 20 H 0.111 0.889 21 C 0.005 3.995 22 O -0.402 6.402 23 C -0.178 4.178 24 C -0.182 4.182 25 C -0.176 4.176 26 H 0.132 0.868 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.163 0.837 30 H 0.125 0.875 31 H 0.231 0.769 32 H -0.228 1.228 33 H -0.199 1.199 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.256 0.744 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.142 0.858 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.247 0.753 44 H 0.133 0.867 45 H 0.101 0.899 46 H 0.181 0.819 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.520 1.061 -2.319 7.001 hybrid contribution -1.299 0.776 1.865 2.401 sum -7.819 1.838 -0.454 8.044 Atomic orbital electron populations 1.23344 0.76412 1.05536 1.02388 1.86081 1.23383 1.26475 1.89033 1.18953 0.92000 0.85192 0.99548 1.20282 0.92548 0.97078 1.04426 1.19368 0.96108 0.90505 1.05837 1.25130 0.91907 1.13610 0.87833 1.86655 1.78556 1.52649 1.17314 0.93993 0.76585 0.72414 0.89093 1.18834 0.91490 0.84509 0.99612 1.86202 1.35062 1.11834 1.89073 1.22676 0.92615 0.82216 1.06632 1.20506 0.88341 0.85259 0.75777 1.90785 1.16560 1.87277 1.49743 1.45546 1.11482 1.04255 1.75331 1.21840 0.93242 0.81764 1.04148 1.22212 0.87261 0.95717 0.88455 1.92830 1.62304 1.97204 1.65002 1.23599 0.99585 0.92833 1.01420 1.22337 0.95414 0.96469 0.99378 0.88912 1.22119 0.90677 0.96858 0.89807 1.86407 1.39112 1.77686 1.37008 1.23698 1.03613 0.95357 0.95134 1.21375 0.92163 0.99974 1.04736 1.21395 1.01523 0.90892 1.03809 0.86846 0.91689 0.91258 0.83653 0.87503 0.76938 1.22836 1.19917 0.86348 0.85529 0.74437 0.88646 0.91093 0.89231 0.85753 0.92556 0.92620 0.75269 0.86725 0.89893 0.81873 0.82266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.34 -0.76 10.50 -93.37 -0.98 -1.74 16 3 C 0.09 0.22 6.69 22.49 0.15 0.37 16 4 C -0.13 -0.45 8.59 22.36 0.19 -0.26 16 5 C -0.12 -0.62 5.27 -19.78 -0.10 -0.72 16 6 C -0.08 -0.52 2.37 71.23 0.17 -0.35 16 7 O -0.54 -5.67 12.88 -148.98 -1.92 -7.59 16 8 Si 0.77 2.21 30.26 68.60 2.08 4.29 16 9 C 0.10 0.45 6.66 22.49 0.15 0.60 16 10 O -0.31 -2.28 9.00 -74.25 -0.67 -2.95 16 11 C 0.04 -0.06 5.22 71.24 0.37 0.31 16 12 C 0.51 2.10 7.91 87.66 0.69 2.80 16 13 O -0.57 -8.76 16.50 16.00 0.26 -8.50 16 14 N -0.71 1.70 5.47 -463.08 -2.53 -0.83 16 15 C 0.11 -0.22 5.37 86.38 0.46 0.25 16 16 C 0.08 -0.34 1.66 -10.27 -0.02 -0.36 16 17 F -0.19 0.17 15.02 44.97 0.68 0.85 16 18 C -0.14 0.75 7.12 31.12 0.22 0.97 16 19 C -0.12 0.39 4.21 -10.19 -0.04 0.34 16 20 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 21 C 0.08 -0.17 6.66 71.98 0.48 0.31 16 22 O -0.59 -0.12 13.66 -148.98 -2.04 -2.15 16 23 C -0.14 0.68 7.07 31.20 0.22 0.90 16 24 C -0.16 0.25 9.03 22.35 0.20 0.45 16 25 C -0.16 0.26 9.03 22.35 0.20 0.46 16 26 H 0.11 -0.93 8.14 -2.39 -0.02 -0.95 16 27 H 0.06 -0.49 7.66 -2.38 -0.02 -0.51 16 28 H 0.07 -0.57 7.66 -2.39 -0.02 -0.58 16 29 H 0.15 0.32 4.86 -2.91 -0.01 0.31 16 30 H 0.11 0.95 7.82 -2.39 -0.02 0.93 16 31 H 0.38 1.30 8.70 -74.06 -0.64 0.65 16 32 H -0.30 -3.03 7.11 99.48 0.71 -2.32 16 33 H -0.27 -1.36 6.68 99.48 0.66 -0.69 16 34 H 0.12 -0.84 7.66 -2.39 -0.02 -0.86 16 35 H 0.13 -1.10 7.66 -2.39 -0.02 -1.12 16 36 H 0.42 -3.31 8.19 -92.71 -0.76 -4.06 16 37 H 0.10 -0.21 7.95 -2.39 -0.02 -0.23 16 38 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.09 -0.48 8.10 -2.39 -0.02 -0.50 16 40 H 0.12 -1.02 8.10 -2.39 -0.02 -1.04 16 41 H 0.06 -0.12 6.32 -2.39 -0.02 -0.13 16 42 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.40 -3.13 9.12 -74.06 -0.68 -3.80 16 44 H 0.11 -0.78 7.97 -2.39 -0.02 -0.80 16 45 H 0.08 -0.32 8.10 -2.39 -0.02 -0.34 16 46 H 0.16 -1.39 6.29 -2.91 -0.02 -1.41 16 47 H 0.16 -1.15 6.29 -2.91 -0.02 -1.17 16 Total: 0.00 -28.87 390.75 -1.69 -30.56 By element: Atomic # 1 Polarization: -17.98 SS G_CDS: -1.04 Total: -19.01 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 4.46 Total: 7.08 kcal Atomic # 7 Polarization: 1.70 SS G_CDS: -2.53 Total: -0.83 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -5.34 Total: -22.93 kcal Atomic # 9 Polarization: 0.17 SS G_CDS: 0.68 Total: 0.85 kcal Atomic # 14 Polarization: 2.21 SS G_CDS: 2.08 Total: 4.29 kcal Total: -28.87 -1.69 -30.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_4974302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.577 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds