Wall clock time and date at job start Sun Mar 7 2021 09:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35891 * 117.00195 * 2 1 4 4 C 1.38614 * 120.03190 * 179.97438 * 3 2 1 5 5 C 1.38653 * 119.89260 * 180.02562 * 4 3 2 6 6 O 1.35901 * 120.02583 * 179.97438 * 5 4 3 7 7 C 1.42900 * 117.00024 * 0.02562 * 6 5 4 8 8 C 1.50701 * 109.47064 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99781 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99622 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 F 1.39903 * 112.84840 * 316.19544 * 12 11 10 14 14 C 1.53787 * 113.61418 * 87.49925 * 12 11 10 15 15 C 1.53784 * 87.07648 * 89.11807 * 14 12 11 16 16 H 1.09000 * 113.61467 * 270.88176 * 15 14 12 17 17 C 1.53006 * 113.68594 * 139.99025 * 15 14 12 18 18 O 1.42901 * 109.46573 * 87.46472 * 17 15 14 19 19 C 1.53780 * 113.61900 * 184.99939 * 12 11 10 20 20 C 1.38747 * 119.94549 * 0.25706 * 5 4 3 21 21 C 1.50701 * 119.97278 * 179.75029 * 20 5 4 22 22 O 1.42894 * 109.47735 * 74.99423 * 21 20 5 23 23 Si 1.86308 * 109.47096 * 194.99944 * 21 20 5 24 24 C 1.38193 * 120.05672 * 359.48607 * 20 5 4 25 25 C 1.38164 * 120.10955 * 0.51550 * 24 20 5 26 26 H 1.08993 * 109.47399 * 299.99775 * 1 2 3 27 27 H 1.09002 * 109.47423 * 59.99670 * 1 2 3 28 28 H 1.09004 * 109.47396 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.04745 * 0.04503 * 4 3 2 30 30 H 1.09001 * 109.47130 * 59.99552 * 7 6 5 31 31 H 1.09002 * 109.47002 * 299.99653 * 7 6 5 32 32 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 33 33 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 34 34 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 35 35 H 1.08998 * 113.61239 * 203.66675 * 14 12 11 36 36 H 1.08994 * 113.61233 * 334.57222 * 14 12 11 37 37 H 1.08997 * 109.47010 * 207.45884 * 17 15 14 38 38 H 1.08989 * 109.47353 * 327.46607 * 17 15 14 39 39 H 0.96704 * 113.99591 * 179.97438 * 18 17 15 40 40 H 1.09002 * 113.60839 * 25.43161 * 19 12 11 41 41 H 1.08997 * 113.62198 * 156.33399 * 19 12 11 42 42 H 1.09006 * 109.46904 * 314.99394 * 21 20 5 43 43 H 0.96702 * 113.99643 * 60.00063 * 22 21 20 44 44 H 1.48491 * 109.99964 * 58.67452 * 23 21 20 45 45 H 1.48499 * 109.99798 * 179.97438 * 23 21 20 46 46 H 1.07999 * 119.95260 * 180.25623 * 24 20 5 47 47 H 1.07994 * 119.97374 * 179.72278 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4301 1.2840 0.0005 5 6 4.0567 2.5210 0.0011 6 8 5.4136 2.5959 0.0021 7 6 6.1316 1.3604 0.0021 8 6 7.6125 1.6401 0.0027 9 8 8.0134 2.7847 0.0026 10 7 8.4911 0.6181 0.0022 11 6 9.9307 0.8900 0.0022 12 6 10.6995 -0.4328 0.0023 13 9 10.1680 -1.3700 0.8947 14 6 10.9559 -0.9964 -1.4055 15 6 12.2581 -0.1782 -1.4101 16 1 12.1365 0.8338 -1.7963 17 6 13.4444 -0.9145 -2.0359 18 8 13.4568 -0.6852 -3.4464 19 6 12.2226 -0.2602 0.1251 20 6 3.2971 3.6820 0.0065 21 6 3.9774 5.0267 0.0127 22 8 4.5038 5.3005 -1.2872 23 14 2.7438 6.3447 0.4735 24 6 1.9172 3.6065 0.0006 25 6 1.2905 2.3752 0.0001 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 4.0196 0.3791 0.0002 30 1 5.8705 0.7885 -0.8884 31 1 5.8693 0.7877 0.8916 32 1 8.1705 -0.2973 0.0018 33 1 10.1924 1.4626 -0.8876 34 1 10.1925 1.4620 0.8924 35 1 11.1174 -2.0742 -1.4215 36 1 10.2295 -0.6650 -2.1474 37 1 14.3724 -0.5450 -1.5996 38 1 13.3520 -1.9830 -1.8423 39 1 14.1842 -1.1228 -3.9095 40 1 12.5187 0.6655 0.6187 41 1 12.7305 -1.1367 0.5274 42 1 4.7898 5.0195 0.7395 43 1 3.8353 5.3222 -1.9856 44 1 2.1656 6.0542 1.8100 45 1 3.4025 7.6755 0.4838 46 1 1.3277 4.5114 0.0006 47 1 0.2120 2.3187 0.0000 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_4974312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:04:09 Heat of formation + Delta-G solvation = -182.424846 kcal Electronic energy + Delta-G solvation = -31613.163144 eV Core-core repulsion = 26872.022008 eV Total energy + Delta-G solvation = -4741.141136 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.156 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -48.80679 -41.87004 -41.02312 -40.18414 -39.74294 -38.32326 -37.26847 -36.92897 -35.72510 -32.31174 -31.68583 -30.65486 -29.11488 -28.35709 -27.13414 -26.72733 -26.12091 -23.68239 -22.88021 -22.50964 -21.79395 -20.34983 -19.96777 -18.77130 -18.28989 -18.14811 -17.95146 -17.73512 -17.50813 -17.16081 -16.87949 -16.68611 -16.64931 -16.51636 -16.14476 -15.95392 -15.69783 -15.62466 -15.23648 -15.13265 -14.90935 -14.56726 -14.46554 -14.39648 -13.93343 -13.86107 -13.53534 -13.39758 -13.33515 -13.17700 -12.84487 -12.51513 -12.39575 -12.27099 -12.17067 -12.02842 -11.87599 -11.64002 -11.58452 -11.39760 -11.16803 -10.85738 -10.43024 -10.36113 -9.71844 -9.11486 -5.03746 0.19556 0.28646 1.28593 1.29697 1.31685 1.64837 1.98576 2.22538 2.45863 2.56401 2.96394 3.04432 3.19385 3.21133 3.41042 3.47413 3.59776 3.72422 3.81523 3.86887 3.89290 3.95127 4.07356 4.14926 4.22289 4.30380 4.32992 4.34013 4.38451 4.43440 4.44964 4.47782 4.55992 4.60520 4.63029 4.64946 4.69084 4.79400 4.87472 4.94510 5.01117 5.11203 5.22357 5.26732 5.29277 5.46526 6.05581 6.24107 6.36965 6.86037 6.86330 6.91904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.163 3.837 4 C -0.255 4.255 5 C 0.172 3.828 6 O -0.304 6.304 7 C 0.037 3.963 8 C 0.517 3.483 9 O -0.564 6.564 10 N -0.711 5.711 11 C 0.121 3.879 12 C 0.081 3.919 13 F -0.204 7.204 14 C -0.141 4.141 15 C -0.111 4.111 16 H 0.097 0.903 17 C 0.084 3.916 18 O -0.597 6.597 19 C -0.135 4.135 20 C -0.202 4.202 21 C -0.070 4.070 22 O -0.558 6.558 23 Si 0.797 3.203 24 C -0.031 4.031 25 C -0.236 4.236 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.150 0.850 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.419 0.581 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.398 0.602 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.391 0.609 44 H -0.280 1.280 45 H -0.304 1.304 46 H 0.168 0.832 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 -6.379 -1.882 7.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.117 3.883 4 C -0.274 4.274 5 C 0.126 3.874 6 O -0.217 6.217 7 C -0.041 4.041 8 C 0.303 3.697 9 O -0.442 6.442 10 N -0.366 5.366 11 C -0.004 4.004 12 C 0.062 3.938 13 F -0.184 7.184 14 C -0.179 4.179 15 C -0.130 4.130 16 H 0.115 0.885 17 C 0.007 3.993 18 O -0.406 6.406 19 C -0.173 4.173 20 C -0.204 4.204 21 C -0.178 4.178 22 O -0.365 6.365 23 Si 0.701 3.299 24 C -0.048 4.048 25 C -0.255 4.255 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.133 0.867 29 H 0.168 0.832 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.257 0.743 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.248 0.752 40 H 0.113 0.887 41 H 0.132 0.868 42 H 0.098 0.902 43 H 0.240 0.760 44 H -0.207 1.207 45 H -0.232 1.232 46 H 0.185 0.815 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.408 -4.651 -0.817 5.824 hybrid contribution 0.985 -1.320 0.284 1.671 sum -2.422 -5.971 -0.533 6.466 Atomic orbital electron populations 1.23414 0.75901 1.05706 1.02817 1.86055 1.23862 1.26609 1.87927 1.18876 0.91551 0.85131 0.92724 1.20545 0.93613 0.97306 1.15947 1.18633 0.81584 0.93373 0.93815 1.86213 1.15756 1.31444 1.88249 1.22682 0.88180 0.86597 1.06677 1.20427 0.88550 0.84892 0.75809 1.90783 1.80705 1.22959 1.49703 1.45513 1.05803 1.09955 1.75330 1.21653 0.79219 0.95278 1.04202 1.22581 0.94462 0.86816 0.89904 1.92847 1.88241 1.66734 1.70602 1.23725 0.98146 1.01824 0.94209 1.22374 0.94899 1.00585 0.95097 0.88491 1.22190 0.97385 0.98871 0.80876 1.86440 1.56076 1.77490 1.20616 1.23609 0.92195 1.05546 0.95914 1.19754 0.93863 0.93969 1.12767 1.25163 1.04430 0.99655 0.88535 1.86541 1.39303 1.93580 1.17096 0.94109 0.80273 0.73001 0.82485 1.20875 0.91460 0.98658 0.93807 1.21462 1.01822 0.91112 1.11085 0.91298 0.90978 0.86663 0.83220 0.85927 0.86154 0.74322 0.89173 0.90429 0.87639 0.90014 0.92162 0.92132 0.75240 0.88669 0.86832 0.90228 0.75994 1.20675 1.23206 0.81512 0.82015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.42 10.49 -92.33 -0.97 -1.38 16 3 C 0.16 0.36 6.68 22.49 0.15 0.51 16 4 C -0.25 -0.88 8.97 22.46 0.20 -0.68 16 5 C 0.17 1.20 6.66 22.49 0.15 1.35 16 6 O -0.30 -3.14 8.99 -73.40 -0.66 -3.80 16 7 C 0.04 0.08 5.22 71.24 0.37 0.45 16 8 C 0.52 3.64 7.91 87.66 0.69 4.33 16 9 O -0.56 -10.12 16.50 16.01 0.26 -9.86 16 10 N -0.71 -0.46 5.45 -463.06 -2.52 -2.99 16 11 C 0.12 0.11 5.26 86.38 0.45 0.57 16 12 C 0.08 -0.16 1.91 -10.27 -0.02 -0.18 16 13 F -0.20 -0.25 16.61 44.97 0.75 0.50 16 14 C -0.14 0.42 7.07 31.12 0.22 0.64 16 15 C -0.11 0.32 3.66 -10.26 -0.04 0.28 16 16 H 0.10 -0.07 7.72 -2.39 -0.02 -0.09 16 17 C 0.08 -0.31 6.89 71.98 0.50 0.19 16 18 O -0.60 0.01 13.66 -148.98 -2.04 -2.02 16 19 C -0.13 0.60 7.12 31.12 0.22 0.82 16 20 C -0.20 -1.01 5.27 -19.75 -0.10 -1.11 16 21 C -0.07 -0.47 2.37 71.24 0.17 -0.30 16 22 O -0.56 -4.65 12.88 -148.98 -1.92 -6.57 16 23 Si 0.80 0.79 29.92 68.60 2.05 2.84 16 24 C -0.03 0.03 8.65 22.24 0.19 0.22 16 25 C -0.24 0.34 9.04 22.39 0.20 0.54 16 26 H 0.07 -0.57 7.66 -2.39 -0.02 -0.58 16 27 H 0.07 -0.63 7.66 -2.39 -0.02 -0.65 16 28 H 0.12 -1.05 8.14 -2.39 -0.02 -1.07 16 29 H 0.15 -0.07 6.30 -2.91 -0.02 -0.08 16 30 H 0.12 -0.44 7.66 -2.39 -0.02 -0.46 16 31 H 0.12 -0.40 7.66 -2.39 -0.02 -0.42 16 32 H 0.42 -1.94 8.03 -92.71 -0.74 -2.69 16 33 H 0.09 0.17 7.39 -2.39 -0.02 0.16 16 34 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.11 -0.43 7.90 -2.39 -0.02 -0.45 16 36 H 0.08 -0.17 8.10 -2.39 -0.02 -0.19 16 37 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.06 -0.36 7.85 -2.39 -0.02 -0.38 16 39 H 0.40 -3.29 9.12 -74.05 -0.68 -3.96 16 40 H 0.09 -0.51 8.10 -2.39 -0.02 -0.53 16 41 H 0.11 -0.70 8.10 -2.39 -0.02 -0.72 16 42 H 0.08 1.01 7.82 -2.38 -0.02 0.99 16 43 H 0.39 -0.69 8.70 -74.06 -0.64 -1.33 16 44 H -0.28 -1.31 7.11 99.48 0.71 -0.60 16 45 H -0.30 -2.76 7.11 99.48 0.71 -2.05 16 46 H 0.17 -1.29 5.13 -2.91 -0.01 -1.30 16 47 H 0.16 -1.17 6.29 -2.91 -0.02 -1.19 16 Total: 0.00 -30.86 392.81 -1.55 -32.41 By element: Atomic # 1 Polarization: -16.77 SS G_CDS: -0.98 Total: -17.75 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 4.47 Total: 8.63 kcal Atomic # 7 Polarization: -0.46 SS G_CDS: -2.52 Total: -2.99 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -5.32 Total: -23.64 kcal Atomic # 9 Polarization: -0.25 SS G_CDS: 0.75 Total: 0.50 kcal Atomic # 14 Polarization: 0.79 SS G_CDS: 2.05 Total: 2.84 kcal Total: -30.86 -1.55 -32.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_4974312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.015 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds