Wall clock time and date at job start Sun Mar 7 2021 09:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86299 * 109.46626 * 2 1 4 4 C 1.50701 * 109.47080 * 240.00031 * 2 1 3 5 5 C 1.32764 * 124.71132 * 299.99284 * 4 2 1 6 6 C 1.44426 * 113.08152 * 180.02562 * 5 4 2 7 7 C 1.47198 * 123.45872 * 179.97438 * 6 5 4 8 8 O 1.21636 * 120.00118 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99681 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99741 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46889 * 179.97438 * 10 9 7 12 12 F 1.39900 * 112.90784 * 48.74893 * 11 10 9 13 13 C 1.53777 * 113.61002 * 179.97438 * 11 10 9 14 14 C 1.53781 * 87.08336 * 89.11664 * 13 11 10 15 15 H 1.09002 * 113.61228 * 270.88201 * 14 13 11 16 16 C 1.53000 * 113.61707 * 140.06298 * 14 13 11 17 17 O 1.42898 * 109.47043 * 176.53192 * 16 14 13 18 18 C 1.53775 * 113.61584 * 277.49246 * 11 10 9 19 19 C 1.36002 * 113.07929 * 0.24690 * 6 5 4 20 20 S 1.70448 * 110.81909 * 359.62458 * 19 6 5 21 21 H 0.96696 * 114.00150 * 60.00615 * 1 2 3 22 22 H 1.08993 * 109.46899 * 119.99828 * 2 1 3 23 23 H 1.48497 * 110.00044 * 59.99985 * 3 2 1 24 24 H 1.48500 * 109.99858 * 181.32058 * 3 2 1 25 25 H 1.08006 * 123.46173 * 0.02562 * 5 4 2 26 26 H 0.96995 * 120.00500 * 359.97438 * 9 7 6 27 27 H 1.09001 * 109.47319 * 59.99915 * 10 9 7 28 28 H 1.08995 * 109.46703 * 299.99823 * 10 9 7 29 29 H 1.08997 * 113.61941 * 334.56371 * 13 11 10 30 30 H 1.09005 * 113.61136 * 203.66536 * 13 11 10 31 31 H 1.09001 * 109.47043 * 296.52693 * 16 14 13 32 32 H 1.08992 * 109.47277 * 56.52863 * 16 14 13 33 33 H 0.96703 * 113.99884 * 180.02562 * 17 16 14 34 34 H 1.08993 * 113.61636 * 156.33278 * 18 11 10 35 35 H 1.09008 * 113.61006 * 25.43521 * 18 11 10 36 36 H 1.07999 * 124.58918 * 179.73514 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.6690 -1.9763 -1.5326 6 6 2.2783 -2.4007 -2.7714 7 6 2.1365 -3.7584 -3.3222 8 8 1.4786 -4.5905 -2.7270 9 7 2.7365 -4.0796 -4.4855 10 6 2.5958 -5.4311 -5.0334 11 6 3.3678 -5.5302 -6.3506 12 9 4.6718 -5.0324 -6.2564 13 6 3.2843 -6.9166 -7.0106 14 6 2.0207 -6.4124 -7.7275 15 1 1.1024 -6.5830 -7.1655 16 6 1.9190 -6.8689 -9.1843 17 8 0.6803 -6.4212 -9.7384 18 6 2.5893 -4.9925 -7.5629 19 6 3.0012 -1.4188 -3.3738 20 16 2.9451 0.0206 -2.4627 21 1 -0.3933 0.4416 -0.7651 22 1 1.7923 -0.5138 0.8900 23 1 1.5613 2.4679 1.2085 24 1 3.5345 1.7704 -0.0322 25 1 1.0623 -2.6224 -0.9155 26 1 3.2614 -3.4162 -4.9599 27 1 1.5418 -5.6423 -5.2136 28 1 2.9950 -6.1546 -4.3226 29 1 3.0929 -7.7253 -6.3053 30 1 4.1135 -7.1296 -7.6854 31 1 2.7460 -6.4473 -9.7557 32 1 1.9646 -7.9570 -9.2281 33 1 0.5477 -6.6757 -10.6619 34 1 3.2284 -4.6796 -8.3884 35 1 1.8367 -4.2479 -7.3031 36 1 3.5368 -1.5349 -4.3045 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16500644_6894386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:04:36 Heat of formation + Delta-G solvation = -107.395067 kcal Electronic energy + Delta-G solvation = -21977.835718 eV Core-core repulsion = 18277.539986 eV Total energy + Delta-G solvation = -3700.295732 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 302.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.78041 -41.04418 -40.14715 -38.79672 -37.37163 -37.06594 -35.54744 -32.03614 -30.04524 -27.56500 -27.17727 -26.96935 -25.05952 -22.96441 -22.01278 -20.77927 -20.15071 -19.06744 -18.39929 -18.12979 -17.92211 -17.40743 -16.93096 -16.80911 -16.32734 -16.10955 -15.97209 -15.73163 -15.47053 -15.05981 -14.91855 -14.43593 -14.39150 -14.13843 -13.93671 -13.67957 -13.65406 -13.34800 -12.92784 -12.69340 -12.47910 -12.26479 -12.25180 -11.93098 -11.65376 -11.47847 -11.01268 -10.94293 -10.63667 -10.26076 -10.01447 -9.52230 -5.21494 -0.38275 0.31562 0.66780 0.89379 1.17114 1.53963 1.85145 1.94473 2.33702 2.84155 3.00765 3.11067 3.11893 3.31103 3.33028 3.56444 3.75238 3.83267 3.92845 4.11274 4.19267 4.25908 4.26376 4.38658 4.39179 4.45270 4.47621 4.53317 4.59419 4.69743 4.74813 4.88198 5.02395 5.16281 5.19024 5.25920 6.34942 6.45910 6.56301 7.14066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.026 4.026 3 Si 0.654 3.346 4 C -0.244 4.244 5 C -0.052 4.052 6 C -0.156 4.156 7 C 0.581 3.419 8 O -0.530 6.530 9 N -0.724 5.724 10 C 0.122 3.878 11 C 0.078 3.922 12 F -0.196 7.196 13 C -0.141 4.141 14 C -0.108 4.108 15 H 0.107 0.893 16 C 0.087 3.913 17 O -0.573 6.573 18 C -0.146 4.146 19 C -0.205 4.205 20 S 0.199 5.801 21 H 0.381 0.619 22 H 0.124 0.876 23 H -0.232 1.232 24 H -0.236 1.236 25 H 0.157 0.843 26 H 0.403 0.597 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.383 0.617 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 2.138 -5.727 6.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.139 4.139 3 Si 0.553 3.447 4 C -0.361 4.361 5 C -0.081 4.081 6 C -0.174 4.174 7 C 0.367 3.633 8 O -0.407 6.407 9 N -0.377 5.377 10 C -0.003 4.003 11 C 0.059 3.941 12 F -0.176 7.176 13 C -0.179 4.179 14 C -0.127 4.127 15 H 0.125 0.875 16 C 0.009 3.991 17 O -0.379 6.379 18 C -0.183 4.183 19 C -0.343 4.343 20 S 0.465 5.535 21 H 0.229 0.771 22 H 0.141 0.859 23 H -0.155 1.155 24 H -0.160 1.160 25 H 0.175 0.825 26 H 0.238 0.762 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.230 0.770 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.227 3.521 -3.893 5.703 hybrid contribution 0.087 -2.050 -0.692 2.166 sum 2.315 1.471 -4.585 5.343 Atomic orbital electron populations 1.86542 1.16529 1.81676 1.49135 1.24448 0.85285 1.09074 0.95087 0.95098 0.82080 0.77513 0.89987 1.24807 1.08662 0.99178 1.03448 1.21036 0.98130 0.94378 0.94581 1.20194 1.04556 0.94564 0.98111 1.17583 0.78887 0.86763 0.80112 1.90835 1.40101 1.50364 1.59390 1.45627 1.54099 1.13869 1.24137 1.21618 1.01183 0.84876 0.92579 1.22591 0.78933 0.97032 0.95511 1.92869 1.38565 1.88800 1.97363 1.23589 0.98731 0.95812 0.99764 1.22394 0.98412 0.95890 0.95960 0.87476 1.22100 0.86189 0.97946 0.92870 1.86482 1.38904 1.80744 1.31736 1.23727 0.99651 0.98007 0.96949 1.25812 1.04188 0.98998 1.05283 1.83089 1.46657 1.11188 1.12536 0.77133 0.85861 1.15511 1.16033 0.82536 0.76174 0.88836 0.89649 0.89168 0.87858 0.93242 0.93042 0.76996 0.88305 0.89656 0.81130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.09 12.85 -35.23 -0.45 -0.54 16 2 C -0.03 0.01 2.95 36.01 0.11 0.12 16 3 Si 0.65 -0.98 30.91 -169.99 -5.25 -6.23 16 4 C -0.24 -0.02 5.68 -36.18 -0.21 -0.22 16 5 C -0.05 -0.10 9.91 -39.02 -0.39 -0.49 16 6 C -0.16 -0.24 5.98 -104.63 -0.63 -0.87 16 7 C 0.58 1.82 7.79 -12.62 -0.10 1.72 16 8 O -0.53 -3.63 16.80 5.25 0.09 -3.55 16 9 N -0.72 -0.31 5.44 -61.45 -0.33 -0.64 16 10 C 0.12 -0.01 5.24 -4.04 -0.02 -0.03 16 11 C 0.08 -0.09 1.83 -89.81 -0.16 -0.25 16 12 F -0.20 -0.17 16.82 2.25 0.04 -0.14 16 13 C -0.14 0.32 7.12 -25.92 -0.18 0.14 16 14 C -0.11 0.19 3.66 -89.78 -0.33 -0.14 16 15 H 0.11 -0.12 7.65 -51.93 -0.40 -0.52 16 16 C 0.09 -0.16 6.88 37.16 0.26 0.09 16 17 O -0.57 0.17 13.66 -35.23 -0.48 -0.32 16 18 C -0.15 0.24 7.09 -25.89 -0.18 0.05 16 19 C -0.20 0.20 10.38 29.93 0.31 0.51 16 20 S 0.20 -0.31 20.18 -107.50 -2.17 -2.48 16 21 H 0.38 -1.43 8.70 45.56 0.40 -1.03 16 22 H 0.12 -0.02 7.96 -51.93 -0.41 -0.43 16 23 H -0.23 -0.31 7.11 56.52 0.40 0.09 16 24 H -0.24 -0.08 7.11 56.52 0.40 0.32 16 25 H 0.16 0.45 8.06 -52.48 -0.42 0.02 16 26 H 0.40 -0.62 6.68 -40.82 -0.27 -0.90 16 27 H 0.09 -0.01 7.34 -51.93 -0.38 -0.39 16 28 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.09 -0.26 8.10 -51.93 -0.42 -0.68 16 30 H 0.10 -0.28 8.10 -51.93 -0.42 -0.70 16 31 H 0.05 -0.13 7.88 -51.93 -0.41 -0.54 16 32 H 0.05 -0.14 8.14 -51.93 -0.42 -0.56 16 33 H 0.38 -1.66 9.12 45.56 0.42 -1.25 16 34 H 0.10 -0.18 7.92 -51.93 -0.41 -0.59 16 35 H 0.08 -0.12 8.10 -51.92 -0.42 -0.54 16 36 H 0.17 -0.61 7.01 -52.49 -0.37 -0.98 16 LS Contribution 324.29 15.07 4.89 4.89 Total: 0.00 -8.65 324.29 -8.77 -17.42 By element: Atomic # 1 Polarization: -5.48 SS G_CDS: -3.57 Total: -9.05 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.53 Total: 0.63 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: -0.33 Total: -0.64 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: -0.85 Total: -4.40 kcal Atomic # 9 Polarization: -0.17 SS G_CDS: 0.04 Total: -0.14 kcal Atomic # 14 Polarization: -0.98 SS G_CDS: -5.25 Total: -6.23 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.17 Total: -2.48 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -8.65 -8.77 -17.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_6894386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.971 kcal (2) G-P(sol) polarization free energy of solvation -8.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds