Wall clock time and date at job start Sun Mar 7 2021 09:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47226 * 2 1 4 4 C 1.34224 * 117.00068 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00202 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99813 * 180.02562 * 4 3 2 7 7 H 1.09000 * 112.84791 * 50.33783 * 6 4 3 8 8 C 1.53788 * 113.61276 * 181.52990 * 6 4 3 9 9 C 1.53787 * 87.07835 * 139.98039 * 8 6 4 10 10 F 1.39893 * 113.61159 * 220.01971 * 9 8 6 11 11 C 1.53001 * 113.60928 * 89.11781 * 9 8 6 12 12 N 1.46503 * 109.46721 * 179.97438 * 11 9 8 13 13 C 1.34771 * 119.99998 * 180.02562 * 12 11 9 14 14 O 1.21616 * 120.00153 * 359.97438 * 13 12 11 15 15 C 1.47380 * 120.00201 * 179.97438 * 13 12 11 16 16 C 1.36422 * 127.19108 * 359.68710 * 15 13 12 17 17 O 1.33653 * 108.39798 * 179.89345 * 16 15 13 18 18 C 1.34215 * 110.90659 * 0.38775 * 17 16 15 19 19 C 1.50699 * 125.43828 * 179.76644 * 18 17 16 20 20 O 1.42900 * 109.46905 * 244.99550 * 19 18 17 21 21 Si 1.86304 * 109.46826 * 4.99278 * 19 18 17 22 22 C 1.34176 * 109.12486 * 359.75721 * 18 17 16 23 23 C 1.53779 * 113.61558 * 279.13914 * 6 4 3 24 24 H 1.09002 * 109.47153 * 299.99431 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99603 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00540 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00569 * 2 1 3 29 29 H 1.08997 * 113.61485 * 254.52846 * 8 6 4 30 30 H 1.08997 * 113.61114 * 25.34723 * 8 6 4 31 31 H 1.08994 * 109.47184 * 299.99525 * 11 9 8 32 32 H 1.08992 * 109.47662 * 60.00040 * 11 9 8 33 33 H 0.97002 * 120.00121 * 359.97438 * 12 11 9 34 34 H 1.08002 * 125.79890 * 0.02562 * 16 15 13 35 35 H 1.09000 * 109.47448 * 124.99291 * 19 18 17 36 36 H 0.96703 * 113.99740 * 179.97438 * 20 19 18 37 37 H 1.48508 * 109.99874 * 178.68107 * 21 19 18 38 38 H 1.48493 * 110.00253 * 300.00348 * 21 19 18 39 39 H 1.07998 * 127.02233 * 179.97438 * 22 18 17 40 40 H 1.09005 * 113.61001 * 334.56595 * 23 6 4 41 41 H 1.08992 * 113.61675 * 105.46916 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.4897 3.5734 0.7744 8 6 5.4578 2.9684 -0.0359 9 6 5.3321 4.1531 -1.0084 10 9 6.2598 4.1198 -2.0549 11 6 5.2688 5.5138 -0.3116 12 7 5.1510 6.5724 -1.3175 13 6 5.0792 7.8621 -0.9332 14 8 5.1118 8.1472 0.2486 15 6 4.9613 8.9271 -1.9451 16 6 4.9178 8.7760 -3.3002 17 8 4.8053 9.9861 -3.8562 18 6 4.7805 10.9444 -2.9169 19 6 4.6673 12.4238 -3.1806 20 8 5.8660 13.0762 -2.7569 21 14 4.4146 12.7119 -5.0038 22 6 4.8722 10.3749 -1.7054 23 6 3.9498 3.5927 -1.3898 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 5.9123 3.2334 0.9187 30 1 5.9016 2.0793 -0.4837 31 1 4.4033 5.5431 0.3502 32 1 6.1771 5.6663 0.2711 33 1 5.1254 6.3450 -2.2602 34 1 4.9641 7.8377 -3.8330 35 1 3.8190 12.8276 -2.6279 36 1 5.8638 14.0330 -2.8972 37 1 4.2697 14.1652 -5.2730 38 1 5.5644 12.1659 -5.7685 39 1 4.8797 10.8775 -0.7495 40 1 3.9807 2.8752 -2.2098 41 1 3.1888 4.3609 -1.5266 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16501616_13456056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:33:02 Heat of formation + Delta-G solvation = -153.800925 kcal Electronic energy + Delta-G solvation = -27334.848536 eV Core-core repulsion = 22906.023864 eV Total energy + Delta-G solvation = -4428.824672 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.81857 -43.71532 -41.90330 -40.63677 -39.37298 -38.07159 -37.61503 -35.66667 -33.99018 -32.69883 -32.08106 -29.60307 -27.19957 -26.95814 -26.36424 -24.50594 -23.81868 -22.29719 -22.20337 -21.08011 -20.20037 -19.28534 -18.94433 -18.75820 -18.06415 -17.69436 -17.50033 -17.21536 -17.15182 -16.56913 -16.46493 -16.13855 -15.92195 -15.76373 -15.57068 -15.33377 -14.80372 -14.65829 -14.35042 -14.18857 -14.04860 -13.92380 -13.70308 -13.64960 -13.54879 -12.99162 -12.82844 -12.67485 -12.54161 -12.43402 -12.21212 -12.13866 -11.58255 -11.53542 -11.42739 -11.28485 -10.97080 -10.64350 -10.31209 -9.78039 -4.91783 0.24474 0.79965 1.01525 1.18578 1.46943 1.56863 1.75957 1.86928 1.97926 2.22379 2.86214 3.05991 3.08135 3.25148 3.34546 3.46859 3.51361 3.58686 3.83957 3.94671 3.96545 4.03237 4.16836 4.24721 4.27409 4.31484 4.40217 4.49689 4.52571 4.57786 4.67084 4.69880 4.79101 4.84022 4.89100 4.89393 5.09322 5.12689 5.13895 5.19462 5.41016 5.85360 6.34944 6.51151 6.61138 7.05434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.357 6.357 4 C 0.473 3.527 5 O -0.538 6.538 6 C -0.105 4.105 7 H 0.160 0.840 8 C -0.133 4.133 9 C 0.090 3.910 10 F -0.201 7.201 11 C 0.120 3.880 12 N -0.711 5.711 13 C 0.593 3.407 14 O -0.578 6.578 15 C -0.268 4.268 16 C 0.065 3.935 17 O -0.168 6.168 18 C -0.017 4.017 19 C -0.050 4.050 20 O -0.558 6.558 21 Si 0.785 3.215 22 C -0.147 4.147 23 C -0.127 4.127 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.416 0.584 34 H 0.262 0.738 35 H 0.123 0.877 36 H 0.405 0.595 37 H -0.269 1.269 38 H -0.306 1.306 39 H 0.149 0.851 40 H 0.102 0.898 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.834 0.264 -3.928 7.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.274 6.274 4 C 0.318 3.682 5 O -0.428 6.428 6 C -0.124 4.124 7 H 0.178 0.822 8 C -0.171 4.171 9 C 0.071 3.929 10 F -0.181 7.181 11 C -0.004 4.004 12 N -0.364 5.364 13 C 0.382 3.618 14 O -0.459 6.459 15 C -0.272 4.272 16 C -0.005 4.005 17 O -0.064 6.064 18 C -0.065 4.065 19 C -0.158 4.158 20 O -0.370 6.370 21 Si 0.688 3.312 22 C -0.167 4.167 23 C -0.164 4.164 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.253 0.747 34 H 0.277 0.723 35 H 0.141 0.859 36 H 0.258 0.742 37 H -0.194 1.194 38 H -0.233 1.233 39 H 0.167 0.833 40 H 0.120 0.880 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.167 -0.002 -3.970 7.334 hybrid contribution 1.179 0.222 0.575 1.330 sum -4.988 0.220 -3.395 6.038 Atomic orbital electron populations 1.21828 0.90670 1.04251 1.03815 1.23265 0.96935 0.79291 1.02508 1.86520 1.24047 1.33489 1.83327 1.23814 0.80628 0.92679 0.71113 1.90690 1.61214 1.44200 1.46656 1.22482 0.96683 0.90547 1.02685 0.82245 1.23610 0.94036 0.97791 1.01635 1.22443 0.88670 0.95284 0.86457 1.92872 1.68232 1.97441 1.59541 1.21700 1.04991 0.82723 0.90994 1.45479 1.74917 1.04633 1.11385 1.17350 0.75146 0.82157 0.87117 1.90801 1.52088 1.83474 1.19544 1.21424 1.17404 0.94108 0.94286 1.25308 0.95570 0.88225 0.91424 1.83702 1.70415 1.15053 1.37234 1.21370 1.08252 0.90609 0.86243 1.24182 0.90844 0.85582 1.15146 1.86527 1.38102 1.27140 1.85275 0.93585 0.86510 0.80199 0.70950 1.22554 1.03495 0.91905 0.98721 1.23646 0.96239 1.01160 0.95367 0.91246 0.88655 0.91096 0.91457 0.91340 0.87265 0.88194 0.87415 0.90228 0.74657 0.72287 0.85903 0.74236 1.19429 1.23314 0.83318 0.87996 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.71 10.29 71.98 0.74 1.45 16 2 C 0.05 -0.02 6.19 71.98 0.45 0.43 16 3 O -0.36 -0.51 10.22 -51.36 -0.52 -1.04 16 4 C 0.47 0.99 7.48 71.24 0.53 1.53 16 5 O -0.54 -4.85 15.66 21.96 0.34 -4.51 16 6 C -0.11 0.54 3.90 -11.01 -0.04 0.49 16 7 H 0.16 -1.57 7.66 -2.39 -0.02 -1.59 16 8 C -0.13 0.49 6.88 31.13 0.21 0.71 16 9 C 0.09 -0.45 1.84 -10.21 -0.02 -0.47 16 10 F -0.20 0.09 16.82 44.97 0.76 0.84 16 11 C 0.12 -0.47 5.24 86.38 0.45 -0.01 16 12 N -0.71 2.11 5.46 -466.42 -2.55 -0.43 16 13 C 0.59 2.90 7.81 86.65 0.68 3.57 16 14 O -0.58 -8.05 16.98 -4.08 -0.07 -8.12 16 15 C -0.27 -0.77 6.31 -18.99 -0.12 -0.89 16 16 C 0.07 -0.27 11.61 67.40 0.78 0.52 16 17 O -0.17 0.00 8.90 4.46 0.04 0.04 16 18 C -0.02 -0.04 6.22 24.76 0.15 0.11 16 19 C -0.05 0.08 2.96 71.24 0.21 0.30 16 20 O -0.56 -0.78 12.86 -148.98 -1.92 -2.70 16 21 Si 0.78 -2.64 32.09 68.60 2.20 -0.43 16 22 C -0.15 -0.86 10.90 23.65 0.26 -0.60 16 23 C -0.13 0.94 7.10 31.18 0.22 1.16 16 24 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 25 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 26 H 0.07 -0.36 8.14 -2.38 -0.02 -0.37 16 27 H 0.07 0.03 8.13 -2.39 -0.02 0.01 16 28 H 0.07 0.00 8.13 -2.39 -0.02 -0.02 16 29 H 0.11 -0.66 8.10 -2.39 -0.02 -0.68 16 30 H 0.10 0.04 7.45 -2.39 -0.02 0.02 16 31 H 0.11 -0.64 7.34 -2.39 -0.02 -0.65 16 32 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.42 -3.62 7.16 -92.71 -0.66 -4.29 16 34 H 0.26 -3.93 7.47 -2.91 -0.02 -3.95 16 35 H 0.12 -0.87 7.96 -2.39 -0.02 -0.89 16 36 H 0.41 -3.17 8.74 -74.06 -0.65 -3.82 16 37 H -0.27 0.25 7.11 99.48 0.71 0.95 16 38 H -0.31 -1.75 7.11 99.48 0.71 -1.04 16 39 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 40 H 0.10 -0.61 8.09 -2.38 -0.02 -0.63 16 41 H 0.12 -1.36 8.10 -2.39 -0.02 -1.38 16 Total: 0.00 -29.09 362.92 2.61 -26.48 By element: Atomic # 1 Polarization: -18.24 SS G_CDS: -0.19 Total: -18.42 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 4.51 Total: 8.28 kcal Atomic # 7 Polarization: 2.11 SS G_CDS: -2.55 Total: -0.43 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -2.13 Total: -16.32 kcal Atomic # 9 Polarization: 0.09 SS G_CDS: 0.76 Total: 0.84 kcal Atomic # 14 Polarization: -2.64 SS G_CDS: 2.20 Total: -0.43 kcal Total: -29.09 2.61 -26.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16501616_13456056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.316 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds