Wall clock time and date at job start Sun Mar 7 2021 09:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47089 * 2 1 4 4 C 1.34225 * 117.00034 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00354 * 0.02562 * 4 3 2 6 6 C 1.50708 * 120.00012 * 179.97438 * 4 3 2 7 7 H 1.09005 * 112.84648 * 48.80947 * 6 4 3 8 8 C 1.53778 * 113.61154 * 179.97438 * 6 4 3 9 9 C 1.53789 * 87.07786 * 89.12300 * 8 6 4 10 10 F 1.39898 * 113.61148 * 270.79533 * 9 8 6 11 11 C 1.52999 * 113.61594 * 139.97999 * 9 8 6 12 12 N 1.46500 * 109.47207 * 181.52886 * 11 9 8 13 13 C 1.34770 * 119.99917 * 180.02562 * 12 11 9 14 14 O 1.21283 * 120.00380 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99846 * 179.97438 * 13 12 11 16 16 C 1.53537 * 109.82201 * 79.99803 * 15 13 12 17 17 C 1.53043 * 108.71550 * 180.39468 * 16 15 13 18 18 C 1.50283 * 110.26727 * 310.69909 * 17 16 15 19 19 C 1.50703 * 118.47701 * 199.88611 * 18 17 16 20 20 O 1.42899 * 109.46597 * 299.85087 * 19 18 17 21 21 Si 1.86293 * 109.47280 * 179.85522 * 19 18 17 22 22 C 1.31119 * 122.98174 * 19.72883 * 18 17 16 23 23 N 1.38925 * 121.84512 * 359.74854 * 22 18 17 24 24 C 1.53779 * 87.17281 * 25.38717 * 9 8 6 25 25 H 1.08997 * 109.47258 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47062 * 60.00620 * 1 2 3 27 27 H 1.09005 * 109.47124 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47258 * 239.99837 * 2 1 3 29 29 H 1.09004 * 109.47062 * 119.99380 * 2 1 3 30 30 H 1.08994 * 113.62087 * 334.57607 * 8 6 4 31 31 H 1.09007 * 113.68750 * 203.67535 * 8 6 4 32 32 H 1.09004 * 109.47361 * 61.52479 * 11 9 8 33 33 H 1.09004 * 109.47146 * 301.52975 * 11 9 8 34 34 H 0.96997 * 119.99677 * 359.97438 * 12 11 9 35 35 H 1.09004 * 109.81061 * 319.13113 * 15 13 12 36 36 H 1.09002 * 109.62272 * 300.21193 * 16 15 13 37 37 H 1.09001 * 109.62157 * 60.58371 * 16 15 13 38 38 H 1.09002 * 109.32678 * 70.78015 * 17 16 15 39 39 H 1.08997 * 109.32636 * 190.26129 * 17 16 15 40 40 H 1.08995 * 109.46831 * 59.84732 * 19 18 17 41 41 H 0.96701 * 114.00787 * 300.00212 * 20 19 18 42 42 H 1.48503 * 109.99936 * 179.97438 * 21 19 18 43 43 H 1.48500 * 110.00090 * 301.31183 * 21 19 18 44 44 H 1.08001 * 119.08165 * 179.77215 * 22 18 17 45 45 H 0.97001 * 120.55857 * 193.31943 * 23 22 18 46 46 H 1.09000 * 113.61304 * 89.16312 * 24 9 8 47 47 H 1.09000 * 113.61536 * 220.06549 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.4707 3.5819 0.7553 8 6 5.4581 2.9681 0.0013 9 6 5.3816 2.9419 -1.5344 10 9 5.3614 1.6507 -2.0725 11 6 6.4052 3.8531 -2.2148 12 7 6.2288 3.7864 -3.6676 13 6 7.0259 4.5114 -4.4771 14 8 7.8890 5.2194 -4.0029 15 6 6.8448 4.4424 -5.9716 16 6 5.6722 5.3381 -6.3959 17 6 5.5047 5.2415 -7.9141 18 6 6.8278 5.4437 -8.5976 19 6 6.8322 5.8382 -10.0521 20 8 6.1775 4.8276 -10.8216 21 14 8.5902 6.0245 -10.6396 22 6 7.9776 5.2955 -7.9852 23 7 8.0534 4.9418 -6.6439 24 6 3.9867 3.5750 -1.3998 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.9124 2.0754 0.4311 31 1 5.8774 3.8912 0.4019 32 1 7.4121 3.5257 -1.9556 33 1 6.2588 4.8793 -1.8777 34 1 5.5388 3.2200 -4.0468 35 1 6.6517 3.4129 -6.2732 36 1 4.7588 5.0023 -5.9048 37 1 5.8801 6.3707 -6.1156 38 1 5.1145 4.2570 -8.1721 39 1 4.8019 6.0045 -8.2487 40 1 6.3062 6.7850 -10.1734 41 1 6.5924 3.9562 -10.7609 42 1 8.6083 6.4127 -12.0729 43 1 9.2915 7.0502 -9.8264 44 1 8.8914 5.4532 -8.5388 45 1 8.8897 5.0226 -6.1590 46 1 4.0016 4.6648 -1.3830 47 1 3.2546 3.1714 -2.0993 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16501616_15413834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:33:12 Heat of formation + Delta-G solvation = -152.177711 kcal Electronic energy + Delta-G solvation = -30468.388598 eV Core-core repulsion = 25954.503879 eV Total energy + Delta-G solvation = -4513.884720 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -48.87633 -41.82065 -41.38409 -39.63717 -39.08331 -37.53410 -37.32070 -35.75090 -33.17116 -33.12272 -32.68231 -30.08556 -27.54434 -27.07114 -25.99389 -25.23815 -23.89885 -23.51484 -22.37964 -21.77410 -20.55964 -19.45517 -19.24237 -18.69964 -18.13863 -17.73434 -17.54242 -17.35126 -17.00919 -16.88669 -16.49403 -16.23398 -16.03723 -15.78139 -15.57436 -15.20281 -15.11012 -14.93614 -14.64415 -14.53627 -14.33844 -14.09508 -14.03833 -13.84732 -13.58168 -13.35607 -13.06654 -13.00540 -12.92110 -12.91558 -12.64507 -12.48715 -12.21132 -11.94243 -11.87032 -11.62013 -11.57470 -11.50410 -11.42629 -11.25041 -10.92582 -10.29429 -10.15070 -8.45065 -4.99800 1.06402 1.30822 1.39820 1.46357 1.56785 1.62309 1.80587 1.99919 2.61137 2.94432 3.06107 3.19641 3.32172 3.48776 3.56024 3.68125 3.80736 3.81856 3.88079 3.94866 4.02598 4.03854 4.29201 4.30322 4.32440 4.37415 4.45934 4.58500 4.58921 4.62794 4.65883 4.67964 4.72647 4.77591 4.83288 4.86398 4.87895 5.01828 5.10172 5.13386 5.21431 5.24916 5.30578 5.42845 5.57283 6.19648 6.38028 6.65757 6.80586 6.95332 7.01076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.359 6.359 4 C 0.468 3.532 5 O -0.529 6.529 6 C -0.115 4.115 7 H 0.154 0.846 8 C -0.130 4.130 9 C 0.069 3.931 10 F -0.198 7.198 11 C 0.116 3.884 12 N -0.713 5.713 13 C 0.516 3.484 14 O -0.569 6.569 15 C 0.139 3.861 16 C -0.121 4.121 17 C -0.050 4.050 18 C -0.287 4.287 19 C -0.045 4.045 20 O -0.563 6.563 21 Si 0.757 3.243 22 C 0.140 3.860 23 N -0.737 5.737 24 C -0.122 4.122 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.415 0.585 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.392 0.608 42 H -0.307 1.307 43 H -0.293 1.293 44 H 0.143 0.857 45 H 0.407 0.593 46 H 0.151 0.849 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 -0.973 2.781 4.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 O -0.276 6.276 4 C 0.312 3.688 5 O -0.417 6.417 6 C -0.134 4.134 7 H 0.171 0.829 8 C -0.167 4.167 9 C 0.050 3.950 10 F -0.179 7.179 11 C -0.008 4.008 12 N -0.365 5.365 13 C 0.303 3.697 14 O -0.448 6.448 15 C 0.030 3.970 16 C -0.160 4.160 17 C -0.088 4.088 18 C -0.297 4.297 19 C -0.157 4.157 20 O -0.370 6.370 21 Si 0.666 3.334 22 C 0.020 3.980 23 N -0.370 5.370 24 C -0.159 4.159 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.169 0.831 32 H 0.089 0.911 33 H 0.126 0.874 34 H 0.252 0.748 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.241 0.759 42 H -0.236 1.236 43 H -0.221 1.221 44 H 0.160 0.840 45 H 0.244 0.756 46 H 0.169 0.831 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.048 0.119 2.690 4.067 hybrid contribution -0.234 -0.393 0.199 0.499 sum -3.282 -0.274 2.889 4.381 Atomic orbital electron populations 1.21823 0.90562 1.04261 1.03819 1.23227 0.96947 0.79336 1.02305 1.86491 1.24097 1.33397 1.83626 1.23708 0.80680 0.92806 0.71587 1.90698 1.61069 1.44166 1.45813 1.22175 0.97611 0.90273 1.03349 0.82881 1.23644 0.93487 1.06616 0.92991 1.22417 0.98269 0.78972 0.95298 1.92897 1.97401 1.40252 1.87329 1.21833 0.98731 1.00675 0.79555 1.45712 1.37208 1.46981 1.06618 1.20816 0.80634 0.78768 0.89515 1.90732 1.35228 1.41276 1.77561 1.21082 0.87863 1.00520 0.87567 1.21843 0.97291 0.99305 0.97574 1.19924 0.94307 1.02449 0.92090 1.21014 0.94812 1.16787 0.97129 1.24737 1.08102 0.93130 0.89739 1.86425 1.58221 1.22491 1.69894 0.94202 0.76258 0.87514 0.75459 1.20482 0.97310 0.95619 0.84596 1.44374 1.11421 1.72560 1.08664 1.23718 0.94349 1.03993 0.93835 0.91151 0.91135 0.88647 0.91678 0.91570 0.90358 0.83107 0.91120 0.87362 0.74787 0.87095 0.88099 0.92436 0.90384 0.91637 0.89168 0.75856 1.23562 1.22067 0.84036 0.75638 0.83091 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.63 10.29 71.98 0.74 1.37 16 2 C 0.06 0.04 6.19 71.98 0.45 0.48 16 3 O -0.36 -0.88 10.22 -51.37 -0.53 -1.40 16 4 C 0.47 1.48 6.93 71.24 0.49 1.97 16 5 O -0.53 -5.50 14.47 21.97 0.32 -5.18 16 6 C -0.12 0.65 4.46 -10.95 -0.05 0.60 16 7 H 0.15 -1.68 8.14 -2.38 -0.02 -1.70 16 8 C -0.13 0.75 6.93 31.12 0.22 0.96 16 9 C 0.07 -0.31 1.63 -10.27 -0.02 -0.32 16 10 F -0.20 -0.74 15.17 44.97 0.68 -0.06 16 11 C 0.12 -0.54 5.35 86.38 0.46 -0.08 16 12 N -0.71 3.15 5.47 -463.05 -2.53 0.62 16 13 C 0.52 0.11 7.10 87.66 0.62 0.73 16 14 O -0.57 -4.65 16.06 -3.04 -0.05 -4.70 16 15 C 0.14 -0.38 3.36 44.33 0.15 -0.23 16 16 C -0.12 0.41 5.46 30.79 0.17 0.58 16 17 C -0.05 0.08 5.76 29.73 0.17 0.25 16 18 C -0.29 0.10 5.45 -16.74 -0.09 0.00 16 19 C -0.05 -0.03 2.83 71.24 0.20 0.17 16 20 O -0.56 -0.64 12.78 -148.98 -1.90 -2.55 16 21 Si 0.76 -0.30 29.68 68.60 2.04 1.74 16 22 C 0.14 -0.14 9.63 83.41 0.80 0.66 16 23 N -0.74 0.21 5.47 -328.98 -1.80 -1.59 16 24 C -0.12 1.09 7.12 31.18 0.22 1.31 16 25 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H 0.07 -0.32 8.14 -2.38 -0.02 -0.33 16 27 H 0.09 -0.66 8.14 -2.38 -0.02 -0.67 16 28 H 0.06 0.11 8.13 -2.39 -0.02 0.09 16 29 H 0.07 0.09 8.13 -2.38 -0.02 0.07 16 30 H 0.08 -0.01 7.44 -2.39 -0.02 -0.02 16 31 H 0.15 -1.87 8.10 -2.38 -0.02 -1.89 16 32 H 0.07 -0.10 8.14 -2.38 -0.02 -0.12 16 33 H 0.11 -0.80 7.98 -2.38 -0.02 -0.82 16 34 H 0.42 -3.27 8.23 -92.71 -0.76 -4.03 16 35 H 0.11 -0.69 8.14 -2.39 -0.02 -0.71 16 36 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 37 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.09 0.28 7.96 -2.39 -0.02 0.26 16 41 H 0.39 -2.77 8.70 -74.06 -0.64 -3.41 16 42 H -0.31 -2.41 7.11 99.48 0.71 -1.70 16 43 H -0.29 -1.40 7.10 99.48 0.71 -0.69 16 44 H 0.14 -0.55 4.37 -2.91 -0.01 -0.56 16 45 H 0.41 0.28 8.08 -92.71 -0.75 -0.47 16 46 H 0.15 -2.24 7.99 -2.39 -0.02 -2.26 16 47 H 0.09 -0.69 8.09 -2.39 -0.02 -0.71 16 Total: 0.00 -25.41 386.64 -0.34 -25.75 By element: Atomic # 1 Polarization: -19.99 SS G_CDS: -1.10 Total: -21.09 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 4.54 Total: 8.46 kcal Atomic # 7 Polarization: 3.36 SS G_CDS: -4.33 Total: -0.97 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -2.16 Total: -13.83 kcal Atomic # 9 Polarization: -0.74 SS G_CDS: 0.68 Total: -0.06 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: 2.04 Total: 1.74 kcal Total: -25.41 -0.34 -25.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16501616_15413834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.423 kcal (2) G-P(sol) polarization free energy of solvation -25.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds