Wall clock time and date at job start Sun Mar 7 2021 09:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47132 * 2 1 4 4 C 1.34234 * 116.99822 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99856 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99974 * 180.02562 * 4 3 2 7 7 H 1.08994 * 112.90945 * 48.74130 * 6 4 3 8 8 C 1.53777 * 113.61410 * 179.97438 * 6 4 3 9 9 C 1.53781 * 87.08471 * 89.11309 * 8 6 4 10 10 F 1.39903 * 113.61361 * 270.80211 * 9 8 6 11 11 C 1.52997 * 113.61616 * 139.97870 * 9 8 6 12 12 N 1.46496 * 109.47194 * 179.97438 * 11 9 8 13 13 C 1.34777 * 120.00271 * 179.97438 * 12 11 9 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 11 16 16 C 1.53000 * 109.46912 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 13 18 18 O 1.42898 * 109.47145 * 179.97438 * 17 16 15 19 19 C 1.35900 * 117.00172 * 179.97438 * 18 17 16 20 20 C 1.38711 * 120.05562 * 179.97438 * 19 18 17 21 21 C 1.38166 * 119.94073 * 180.02562 * 20 19 18 22 22 C 1.50704 * 119.97102 * 180.02562 * 21 20 19 23 23 O 1.42894 * 109.47322 * 64.99831 * 22 21 20 24 24 Si 1.86293 * 109.47310 * 185.00178 * 22 21 20 25 25 C 1.38242 * 120.06044 * 0.02562 * 21 20 19 26 26 C 1.38287 * 120.10848 * 0.02562 * 25 21 20 27 27 C 1.38125 * 120.05670 * 359.68389 * 26 25 21 28 28 C 1.53782 * 113.60981 * 277.49386 * 6 4 3 29 29 H 1.08997 * 109.46610 * 299.99594 * 1 2 3 30 30 H 1.08999 * 109.46971 * 59.99864 * 1 2 3 31 31 H 1.09000 * 109.46788 * 179.97438 * 1 2 3 32 32 H 1.09013 * 109.46910 * 240.00270 * 2 1 3 33 33 H 1.08998 * 109.47585 * 120.00847 * 2 1 3 34 34 H 1.08999 * 113.61483 * 334.56029 * 8 6 4 35 35 H 1.09007 * 113.61278 * 203.65970 * 8 6 4 36 36 H 1.09002 * 109.47045 * 60.00026 * 11 9 8 37 37 H 1.09001 * 109.47375 * 299.99951 * 11 9 8 38 38 H 0.97005 * 120.00266 * 0.02562 * 12 11 9 39 39 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 40 40 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 41 41 H 1.09001 * 109.47194 * 299.99742 * 16 15 13 42 42 H 1.08992 * 109.47399 * 59.99914 * 16 15 13 43 43 H 1.09001 * 109.47109 * 299.99380 * 17 16 15 44 44 H 1.09002 * 109.47508 * 59.99571 * 17 16 15 45 45 H 1.07998 * 120.02731 * 359.97438 * 20 19 18 46 46 H 1.09003 * 109.46841 * 305.00182 * 22 21 20 47 47 H 0.96702 * 114.00596 * 180.02562 * 23 22 21 48 48 H 1.48504 * 110.00306 * 178.67966 * 24 22 21 49 49 H 1.48508 * 109.99967 * 299.99896 * 24 22 21 50 50 H 1.07997 * 119.94747 * 179.97438 * 25 21 20 51 51 H 1.08007 * 119.97248 * 179.97438 * 26 25 21 52 52 H 1.07997 * 120.02908 * 180.31390 * 27 26 25 53 53 H 1.09001 * 113.61448 * 156.33391 * 28 6 4 54 54 H 1.09002 * 113.61752 * 25.43189 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.4716 3.5820 0.7553 8 6 5.4583 2.9680 -0.0001 9 6 5.3805 2.9433 -1.5357 10 9 5.3597 1.6526 -2.0751 11 6 6.4034 3.8552 -2.2160 12 7 6.2503 3.7617 -3.6699 13 6 7.0504 4.4832 -4.4797 14 8 7.8974 5.2096 -4.0046 15 6 6.8924 4.3874 -5.9753 16 6 7.9155 5.2993 -6.6556 17 6 7.7547 5.2025 -8.1740 18 8 8.7099 6.0546 -8.8094 19 6 8.7015 6.0856 -10.1681 20 6 9.6013 6.8913 -10.8501 21 6 9.5904 6.9214 -12.2314 22 6 10.5681 7.7962 -12.9731 23 8 11.8980 7.3294 -12.7385 24 14 10.1997 7.7303 -14.7981 25 6 8.6835 6.1499 -12.9337 26 6 7.7847 5.3465 -12.2560 27 6 7.7955 5.3083 -10.8753 28 6 3.9858 3.5775 -1.3967 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 5.9128 2.0748 0.4285 35 1 5.8766 3.8912 0.4011 36 1 7.4100 3.5442 -1.9363 37 1 6.2399 4.8851 -1.8986 38 1 5.5725 3.1809 -4.0499 39 1 5.8857 4.6980 -6.2550 40 1 7.0563 3.3576 -6.2927 41 1 7.7520 6.3292 -6.3382 42 1 8.9220 4.9883 -6.3759 43 1 7.9180 4.1727 -8.4918 44 1 6.7482 5.5137 -8.4535 45 1 10.3092 7.4952 -10.3019 46 1 10.4762 8.8236 -12.6207 47 1 12.5814 7.8470 -13.1860 48 1 11.1368 8.6137 -15.5377 49 1 10.3216 6.3347 -15.2908 50 1 8.6762 6.1751 -14.0133 51 1 7.0768 4.7449 -12.8069 52 1 7.0968 4.6769 -10.3467 53 1 4.0016 4.6673 -1.3772 54 1 3.2517 3.1764 -2.0955 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16501616_4549616.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:33:39 Heat of formation + Delta-G solvation = -189.832935 kcal Electronic energy + Delta-G solvation = -35504.171690 eV Core-core repulsion = 30323.407936 eV Total energy + Delta-G solvation = -5180.763754 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.187 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -48.88718 -41.82591 -41.27732 -40.80404 -39.22398 -39.08516 -37.53359 -37.47216 -35.67681 -34.90675 -32.70537 -32.59056 -31.34820 -30.22556 -28.13582 -27.10073 -26.83189 -25.94152 -23.91475 -23.66684 -23.25203 -22.35758 -21.75506 -21.43213 -20.53471 -19.04739 -18.77786 -18.59320 -18.33031 -17.75457 -17.52143 -17.48342 -17.33766 -17.23160 -17.04039 -16.96567 -16.46045 -16.16228 -15.87467 -15.71001 -15.56751 -15.18618 -14.92780 -14.81777 -14.61669 -14.53248 -14.28410 -14.19301 -13.96301 -13.86283 -13.66048 -13.49519 -13.37225 -13.29010 -13.20433 -13.06016 -12.92473 -12.68294 -12.64643 -12.49424 -12.40384 -12.21404 -11.92718 -11.65700 -11.63963 -11.58778 -11.58445 -11.51381 -11.42403 -10.98344 -10.54800 -10.22266 -9.90971 -9.24071 -4.91945 0.21503 0.41307 1.05369 1.28044 1.55864 1.57028 1.61238 1.86866 1.95128 2.32068 2.64205 2.93779 3.07535 3.20936 3.31563 3.38541 3.51015 3.63112 3.76950 3.80837 3.85630 3.88795 3.94274 3.99513 4.02164 4.11953 4.16619 4.26858 4.28671 4.30193 4.33428 4.35704 4.39007 4.41547 4.51950 4.58445 4.59507 4.64218 4.67455 4.70100 4.73030 4.83386 4.85660 4.87554 4.98755 5.01258 5.10250 5.13414 5.16526 5.27559 5.32424 5.38610 5.41940 5.47410 5.74018 6.40867 6.43402 6.56094 6.64824 7.15438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.529 6.529 6 C -0.115 4.115 7 H 0.154 0.846 8 C -0.131 4.131 9 C 0.068 3.932 10 F -0.199 7.199 11 C 0.115 3.885 12 N -0.721 5.721 13 C 0.512 3.488 14 O -0.584 6.584 15 C -0.129 4.129 16 C -0.101 4.101 17 C 0.057 3.943 18 O -0.337 6.337 19 C 0.117 3.883 20 C -0.152 4.152 21 C -0.048 4.048 22 C -0.096 4.096 23 O -0.560 6.560 24 Si 0.779 3.221 25 C -0.164 4.164 26 C -0.073 4.073 27 C -0.206 4.206 28 C -0.120 4.120 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.150 0.850 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.415 0.585 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.118 0.882 46 H 0.091 0.909 47 H 0.395 0.605 48 H -0.286 1.286 49 H -0.295 1.295 50 H 0.144 0.856 51 H 0.160 0.840 52 H 0.155 0.845 53 H 0.151 0.849 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.083 2.069 -1.309 10.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 O -0.275 6.275 4 C 0.313 3.687 5 O -0.418 6.418 6 C -0.134 4.134 7 H 0.172 0.828 8 C -0.169 4.169 9 C 0.049 3.951 10 F -0.179 7.179 11 C -0.010 4.010 12 N -0.374 5.374 13 C 0.300 3.700 14 O -0.464 6.464 15 C -0.168 4.168 16 C -0.139 4.139 17 C -0.018 4.018 18 O -0.252 6.252 19 C 0.072 3.928 20 C -0.171 4.171 21 C -0.048 4.048 22 C -0.203 4.203 23 O -0.370 6.370 24 Si 0.683 3.317 25 C -0.181 4.181 26 C -0.090 4.090 27 C -0.224 4.224 28 C -0.157 4.157 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.168 0.832 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.252 0.748 39 H 0.150 0.850 40 H 0.140 0.860 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.136 0.864 46 H 0.109 0.891 47 H 0.245 0.755 48 H -0.213 1.213 49 H -0.222 1.222 50 H 0.161 0.839 51 H 0.178 0.822 52 H 0.173 0.827 53 H 0.169 0.831 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.203 1.692 -1.248 9.440 hybrid contribution 1.381 -0.900 0.457 1.710 sum -7.822 0.792 -0.791 7.902 Atomic orbital electron populations 1.21822 0.90493 1.04266 1.03850 1.23231 0.96989 0.79327 1.02279 1.86492 1.24031 1.33403 1.83621 1.23702 0.80698 0.92781 0.71567 1.90699 1.61107 1.44170 1.45839 1.22137 0.97509 0.90288 1.03419 0.82799 1.23653 0.93594 1.06532 0.93084 1.22441 0.98394 0.78964 0.95253 1.92889 1.97411 1.40343 1.87296 1.21782 0.98496 1.00452 0.80231 1.45821 1.38337 1.46875 1.06341 1.21116 0.79841 0.78511 0.90486 1.90742 1.36303 1.41044 1.78304 1.21537 1.02793 1.03457 0.89017 1.21145 0.99855 1.00958 0.91930 1.23005 0.92233 0.94230 0.92296 1.86045 1.57736 1.64626 1.16785 1.19169 0.95489 0.95744 0.82447 1.20343 1.00447 1.02492 0.93822 1.19267 0.95799 0.97180 0.92537 1.25207 0.83271 0.99150 1.12682 1.86555 1.15763 1.59912 1.74802 0.93947 0.88963 0.78026 0.70752 1.21176 0.97793 0.98691 1.00460 1.21289 0.97524 0.96765 0.93472 1.21607 1.01820 1.03187 0.95820 1.23688 0.94231 1.03956 0.93815 0.91130 0.91090 0.88647 0.91714 0.91602 0.90460 0.83172 0.91704 0.87578 0.74839 0.85014 0.86039 0.91568 0.92393 0.90283 0.89423 0.86382 0.89069 0.75475 1.21274 1.22224 0.83908 0.82231 0.82715 0.83065 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.62 10.29 71.98 0.74 1.36 16 2 C 0.06 0.05 6.19 71.98 0.45 0.49 16 3 O -0.36 -0.98 10.22 -51.46 -0.53 -1.51 16 4 C 0.47 1.75 6.93 71.24 0.49 2.24 16 5 O -0.53 -5.88 14.47 21.96 0.32 -5.56 16 6 C -0.11 0.56 4.45 -11.01 -0.05 0.51 16 7 H 0.15 -1.61 8.14 -2.39 -0.02 -1.62 16 8 C -0.13 0.60 6.93 31.12 0.22 0.81 16 9 C 0.07 -0.21 1.66 -10.25 -0.02 -0.23 16 10 F -0.20 -0.97 15.11 44.97 0.68 -0.29 16 11 C 0.11 -0.32 5.37 86.38 0.46 0.14 16 12 N -0.72 2.28 5.47 -463.07 -2.53 -0.25 16 13 C 0.51 0.59 7.83 87.66 0.69 1.27 16 14 O -0.58 -6.48 15.98 -3.02 -0.05 -6.53 16 15 C -0.13 0.77 5.70 29.85 0.17 0.94 16 16 C -0.10 -0.03 4.87 30.59 0.15 0.12 16 17 C 0.06 -0.09 4.74 71.98 0.34 0.25 16 18 O -0.34 -2.35 10.14 -92.43 -0.94 -3.29 16 19 C 0.12 0.75 6.69 22.51 0.15 0.91 16 20 C -0.15 -1.27 9.62 22.37 0.22 -1.05 16 21 C -0.05 -0.25 5.38 -19.88 -0.11 -0.36 16 22 C -0.10 -0.20 2.79 71.24 0.20 0.00 16 23 O -0.56 -3.01 12.81 -148.98 -1.91 -4.92 16 24 Si 0.78 -0.93 29.85 68.60 2.05 1.11 16 25 C -0.16 -0.32 8.67 22.28 0.19 -0.12 16 26 C -0.07 0.03 10.04 22.25 0.22 0.25 16 27 C -0.21 -0.21 9.04 22.37 0.20 -0.01 16 28 C -0.12 0.98 7.11 31.14 0.22 1.20 16 29 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 33 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 34 H 0.08 0.09 7.43 -2.39 -0.02 0.07 16 35 H 0.15 -1.66 8.10 -2.38 -0.02 -1.68 16 36 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.11 -0.58 7.94 -2.39 -0.02 -0.60 16 38 H 0.42 -3.03 8.19 -92.70 -0.76 -3.78 16 39 H 0.13 -1.59 8.14 -2.39 -0.02 -1.61 16 40 H 0.12 -1.21 8.14 -2.39 -0.02 -1.23 16 41 H 0.07 0.25 8.10 -2.39 -0.02 0.23 16 42 H 0.06 0.31 8.10 -2.39 -0.02 0.29 16 43 H 0.08 -0.37 7.65 -2.39 -0.02 -0.39 16 44 H 0.09 -0.55 7.67 -2.39 -0.02 -0.56 16 45 H 0.12 1.14 8.06 -2.91 -0.02 1.11 16 46 H 0.09 -0.12 7.96 -2.39 -0.02 -0.13 16 47 H 0.39 -1.26 8.74 -74.06 -0.65 -1.91 16 48 H -0.29 -0.76 7.11 99.48 0.71 -0.05 16 49 H -0.29 -1.58 7.05 99.48 0.70 -0.88 16 50 H 0.14 -0.28 4.86 -2.91 -0.01 -0.30 16 51 H 0.16 -1.07 8.06 -2.91 -0.02 -1.09 16 52 H 0.16 -0.76 6.30 -2.91 -0.02 -0.78 16 53 H 0.15 -2.13 7.96 -2.39 -0.02 -2.15 16 54 H 0.09 -0.64 8.09 -2.39 -0.02 -0.66 16 Total: 0.00 -32.93 448.99 1.59 -31.34 By element: Atomic # 1 Polarization: -18.40 SS G_CDS: -0.44 Total: -18.84 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 4.94 Total: 8.73 kcal Atomic # 7 Polarization: 2.28 SS G_CDS: -2.53 Total: -0.25 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -3.10 Total: -21.80 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.68 Total: -0.29 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: 2.05 Total: 1.11 kcal Total: -32.93 1.59 -31.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16501616_4549616.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.493 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds