Wall clock time and date at job start Sun Mar 7 2021 09:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.47324 * 2 1 4 4 C 1.34226 * 116.99751 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00263 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99793 * 180.02562 * 4 3 2 7 7 H 1.09000 * 112.91063 * 48.75021 * 6 4 3 8 8 C 1.53786 * 113.61613 * 180.02562 * 6 4 3 9 9 C 1.53781 * 87.17350 * 89.15662 * 8 6 4 10 10 F 1.39898 * 113.61514 * 270.84285 * 9 8 6 11 11 C 1.52998 * 113.61406 * 140.02181 * 9 8 6 12 12 N 1.46499 * 109.47132 * 179.97438 * 11 9 8 13 13 C 1.34777 * 120.00034 * 179.97438 * 12 11 9 14 14 O 1.21639 * 119.99993 * 0.02562 * 13 12 11 15 15 C 1.47193 * 119.99804 * 180.02562 * 13 12 11 16 16 C 1.36002 * 123.46495 * 0.03496 * 15 13 12 17 17 S 1.70447 * 110.81986 * 179.97438 * 16 15 13 18 18 C 1.75507 * 92.44296 * 359.97438 * 17 16 15 19 19 C 1.50703 * 124.70754 * 180.02562 * 18 17 16 20 20 O 1.42895 * 109.46890 * 119.97726 * 19 18 17 21 21 Si 1.86294 * 109.47416 * 359.97438 * 19 18 17 22 22 C 1.32766 * 110.57678 * 359.73978 * 18 17 16 23 23 C 1.53782 * 87.08260 * 25.39213 * 9 8 6 24 24 H 1.08995 * 109.47128 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47139 * 300.00292 * 1 2 3 26 26 H 1.09003 * 109.47098 * 59.99376 * 1 2 3 27 27 H 1.08995 * 109.46951 * 240.00216 * 2 1 3 28 28 H 1.09003 * 109.47098 * 120.00624 * 2 1 3 29 29 H 1.09002 * 113.61357 * 334.56579 * 8 6 4 30 30 H 1.09002 * 113.61608 * 203.74741 * 8 6 4 31 31 H 1.08992 * 109.47300 * 300.00265 * 11 9 8 32 32 H 1.08998 * 109.46828 * 60.00392 * 11 9 8 33 33 H 0.96998 * 119.99907 * 0.02562 * 12 11 9 34 34 H 1.08000 * 124.58798 * 359.97157 * 16 15 13 35 35 H 1.09007 * 109.46833 * 239.97382 * 19 18 17 36 36 H 0.96702 * 114.00467 * 299.99793 * 20 19 18 37 37 H 1.48500 * 110.00185 * 180.02562 * 21 19 18 38 38 H 1.48507 * 110.00119 * 301.31928 * 21 19 18 39 39 H 1.07997 * 123.45666 * 180.23149 * 22 18 17 40 40 H 1.08997 * 113.61668 * 89.11298 * 23 9 8 41 41 H 1.08994 * 113.61387 * 220.02033 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9372 0.0012 7 1 3.4710 3.5822 0.7560 8 6 5.4584 2.9679 0.0011 9 6 5.3829 2.9445 -1.5347 10 9 5.3621 1.6543 -2.0752 11 6 6.4076 3.8562 -2.2126 12 7 6.2567 3.7640 -3.6669 13 6 7.0586 4.4857 -4.4747 14 8 7.9080 5.2133 -3.9963 15 6 6.9066 4.3934 -5.9359 16 6 5.9815 3.6044 -6.5453 17 16 6.0880 3.7447 -8.2406 18 6 7.4098 4.8947 -8.1376 19 6 8.0933 5.5248 -9.3237 20 8 7.9476 6.9448 -9.2584 21 14 7.3183 4.8926 -10.8954 22 6 7.7197 5.1370 -6.8696 23 6 3.9881 3.5774 -1.3974 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.9129 2.0746 0.4296 30 1 5.8767 3.8904 0.4037 31 1 6.2444 4.8859 -1.8946 32 1 7.4135 3.5443 -1.9316 33 1 5.5792 3.1841 -4.0483 34 1 5.2752 2.9742 -6.0253 35 1 9.1525 5.2673 -9.3117 36 1 7.0290 7.2467 -9.2650 37 1 7.9840 5.5060 -12.0725 38 1 7.4350 3.4135 -10.9601 39 1 8.5022 5.8173 -6.5675 40 1 4.0031 4.6671 -1.3771 41 1 3.2558 3.1762 -2.0979 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16501616_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:35:02 Heat of formation + Delta-G solvation = -138.217062 kcal Electronic energy + Delta-G solvation = -27349.814963 eV Core-core repulsion = 23045.736737 eV Total energy + Delta-G solvation = -4304.078226 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.88681 -41.77111 -40.92986 -39.32500 -38.77391 -37.40933 -37.09118 -35.65599 -32.77185 -32.05990 -29.89661 -27.33386 -27.00897 -26.59077 -25.06348 -23.77617 -22.42081 -22.03051 -20.79456 -20.39566 -19.23001 -18.68761 -18.18788 -17.88429 -17.63705 -17.49951 -17.07772 -16.98383 -16.50956 -16.33663 -15.97070 -15.86401 -15.46586 -15.14425 -14.95419 -14.65537 -14.47690 -14.40294 -14.15593 -14.05496 -13.81118 -13.67118 -13.60663 -13.38411 -13.17524 -12.94843 -12.75268 -12.69439 -12.54323 -12.27270 -11.94709 -11.70789 -11.59702 -11.54684 -11.41754 -10.94650 -10.64936 -10.26962 -10.02391 -9.53377 -5.22463 -0.39373 0.30463 0.65823 0.88308 1.12647 1.16272 1.52263 1.53221 1.84572 1.94584 2.32666 2.76331 2.90764 3.07831 3.15609 3.30271 3.36774 3.55209 3.72912 3.81556 3.91513 3.92154 3.96287 4.14738 4.17140 4.25255 4.25680 4.27122 4.38383 4.41800 4.50828 4.52898 4.67525 4.69056 4.70999 4.76220 4.95982 4.98165 5.01485 5.17252 5.25027 5.43459 6.33496 6.44713 6.72767 7.13026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.356 6.356 4 C 0.474 3.526 5 O -0.489 6.489 6 C -0.113 4.113 7 H 0.127 0.873 8 C -0.132 4.132 9 C 0.077 3.923 10 F -0.176 7.176 11 C 0.115 3.885 12 N -0.725 5.725 13 C 0.581 3.419 14 O -0.530 6.530 15 C -0.156 4.156 16 C -0.205 4.205 17 S 0.199 5.801 18 C -0.244 4.244 19 C -0.026 4.026 20 O -0.533 6.533 21 Si 0.654 3.346 22 C -0.052 4.052 23 C -0.136 4.136 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.402 0.598 34 H 0.171 0.829 35 H 0.124 0.876 36 H 0.381 0.619 37 H -0.232 1.232 38 H -0.236 1.236 39 H 0.157 0.843 40 H 0.121 0.879 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.201 0.692 -0.514 7.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.273 6.273 4 C 0.316 3.684 5 O -0.375 6.375 6 C -0.133 4.133 7 H 0.145 0.855 8 C -0.170 4.170 9 C 0.058 3.942 10 F -0.156 7.156 11 C -0.009 4.009 12 N -0.378 5.378 13 C 0.366 3.634 14 O -0.407 6.407 15 C -0.174 4.174 16 C -0.343 4.343 17 S 0.465 5.535 18 C -0.361 4.361 19 C -0.139 4.139 20 O -0.339 6.339 21 Si 0.553 3.447 22 C -0.081 4.081 23 C -0.174 4.174 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.139 0.861 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.237 0.763 34 H 0.188 0.812 35 H 0.141 0.859 36 H 0.229 0.771 37 H -0.155 1.155 38 H -0.160 1.160 39 H 0.175 0.825 40 H 0.139 0.861 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.397 -0.273 -2.133 6.749 hybrid contribution 0.706 -0.180 1.670 1.822 sum -5.691 -0.453 -0.463 5.728 Atomic orbital electron populations 1.21823 0.92261 1.03309 1.03660 1.23094 0.95585 0.79654 1.02832 1.86477 1.24028 1.32898 1.83905 1.22897 0.80914 0.91663 0.72936 1.90717 1.60376 1.42557 1.43888 1.22031 0.97627 0.92023 1.01580 0.85531 1.23551 0.93575 1.06264 0.93586 1.22199 0.97016 0.80004 0.94998 1.92936 1.97244 1.38540 1.86855 1.21803 0.99491 0.99955 0.79677 1.45654 1.38454 1.47342 1.06334 1.17584 0.80764 0.79544 0.85460 1.90836 1.34267 1.39003 1.76596 1.20202 1.00508 1.02793 0.93917 1.25808 1.03483 1.04122 1.00906 1.83098 1.29800 1.39704 1.00899 1.24809 1.04688 1.07029 0.99557 1.24446 1.03337 0.84641 1.01464 1.86542 1.32255 1.18237 1.96837 0.95117 0.90201 0.81574 0.77813 1.21036 0.99026 0.98154 0.89917 1.23675 0.96011 1.02586 0.95103 0.89949 0.91332 0.91377 0.91060 0.91043 0.87910 0.86144 0.88764 0.89665 0.76259 0.81177 0.85850 0.77143 1.15499 1.16048 0.82528 0.86059 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.30 10.29 37.16 0.38 0.68 16 2 C 0.06 0.01 6.19 37.16 0.23 0.23 16 3 O -0.36 -0.45 10.22 -39.25 -0.40 -0.85 16 4 C 0.47 0.77 6.93 36.00 0.25 1.02 16 5 O -0.49 -2.31 14.48 -18.75 -0.27 -2.58 16 6 C -0.11 0.22 4.46 -90.86 -0.41 -0.19 16 7 H 0.13 -0.51 8.14 -51.93 -0.42 -0.94 16 8 C -0.13 0.27 6.92 -25.92 -0.18 0.10 16 9 C 0.08 -0.09 1.66 -89.81 -0.15 -0.24 16 10 F -0.18 -0.38 15.12 2.25 0.03 -0.35 16 11 C 0.11 -0.10 5.37 -4.04 -0.02 -0.12 16 12 N -0.73 0.07 5.44 -61.46 -0.33 -0.26 16 13 C 0.58 1.55 7.79 -12.62 -0.10 1.45 16 14 O -0.53 -3.36 16.80 5.24 0.09 -3.27 16 15 C -0.16 -0.20 5.98 -104.63 -0.63 -0.82 16 16 C -0.20 0.24 10.38 29.93 0.31 0.55 16 17 S 0.20 -0.33 20.18 -107.50 -2.17 -2.50 16 18 C -0.24 0.03 5.69 -36.18 -0.21 -0.18 16 19 C -0.03 0.01 2.95 36.01 0.11 0.12 16 20 O -0.53 0.03 12.84 -35.23 -0.45 -0.43 16 21 Si 0.65 -1.05 30.91 -169.99 -5.25 -6.30 16 22 C -0.05 -0.09 9.91 -39.02 -0.39 -0.47 16 23 C -0.14 0.42 7.11 -25.82 -0.18 0.24 16 24 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 25 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 26 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 27 H 0.07 0.02 8.13 -51.93 -0.42 -0.40 16 28 H 0.07 0.01 8.13 -51.93 -0.42 -0.41 16 29 H 0.10 -0.01 7.43 -51.93 -0.39 -0.40 16 30 H 0.12 -0.57 8.10 -51.93 -0.42 -0.99 16 31 H 0.09 -0.19 7.95 -51.93 -0.41 -0.60 16 32 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.40 -0.75 6.68 -40.82 -0.27 -1.02 16 34 H 0.17 -0.63 7.01 -52.49 -0.37 -1.00 16 35 H 0.12 -0.03 7.96 -51.93 -0.41 -0.44 16 36 H 0.38 -1.52 8.70 45.56 0.40 -1.13 16 37 H -0.23 -0.29 7.11 56.52 0.40 0.12 16 38 H -0.24 -0.07 7.11 56.52 0.40 0.33 16 39 H 0.16 0.40 8.06 -52.49 -0.42 -0.02 16 40 H 0.12 -0.63 7.97 -51.93 -0.41 -1.05 16 41 H 0.09 -0.25 8.10 -51.93 -0.42 -0.67 16 LS Contribution 366.76 15.07 5.53 5.53 Total: 0.00 -9.96 366.76 -9.50 -19.46 By element: Atomic # 1 Polarization: -5.53 SS G_CDS: -5.29 Total: -10.82 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.98 Total: 2.37 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -0.33 Total: -0.26 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -1.04 Total: -7.12 kcal Atomic # 9 Polarization: -0.38 SS G_CDS: 0.03 Total: -0.35 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: -5.25 Total: -6.30 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -2.17 Total: -2.50 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -9.96 -9.50 -19.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16501616_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.754 kcal (2) G-P(sol) polarization free energy of solvation -9.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds