Wall clock time and date at job start Sun Mar 7 2021 09:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.47324 * 2 1 4 4 C 1.34226 * 116.99751 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00263 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99793 * 180.02562 * 4 3 2 7 7 H 1.09000 * 112.91063 * 48.75021 * 6 4 3 8 8 C 1.53786 * 113.61613 * 180.02562 * 6 4 3 9 9 C 1.53781 * 87.17350 * 89.15662 * 8 6 4 10 10 F 1.39898 * 113.61514 * 270.84285 * 9 8 6 11 11 C 1.52998 * 113.61406 * 140.02181 * 9 8 6 12 12 N 1.46499 * 109.47132 * 179.97438 * 11 9 8 13 13 C 1.34777 * 120.00034 * 179.97438 * 12 11 9 14 14 O 1.21639 * 119.99993 * 0.02562 * 13 12 11 15 15 C 1.47193 * 119.99804 * 180.02562 * 13 12 11 16 16 C 1.36002 * 123.46495 * 0.03496 * 15 13 12 17 17 S 1.70447 * 110.81986 * 179.97438 * 16 15 13 18 18 C 1.75507 * 92.44296 * 359.97438 * 17 16 15 19 19 C 1.50703 * 124.70754 * 180.02562 * 18 17 16 20 20 O 1.42895 * 109.46890 * 119.97726 * 19 18 17 21 21 Si 1.86294 * 109.47416 * 359.97438 * 19 18 17 22 22 C 1.32766 * 110.57678 * 359.73978 * 18 17 16 23 23 C 1.53782 * 87.08260 * 25.39213 * 9 8 6 24 24 H 1.08995 * 109.47128 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47139 * 300.00292 * 1 2 3 26 26 H 1.09003 * 109.47098 * 59.99376 * 1 2 3 27 27 H 1.08995 * 109.46951 * 240.00216 * 2 1 3 28 28 H 1.09003 * 109.47098 * 120.00624 * 2 1 3 29 29 H 1.09002 * 113.61357 * 334.56579 * 8 6 4 30 30 H 1.09002 * 113.61608 * 203.74741 * 8 6 4 31 31 H 1.08992 * 109.47300 * 300.00265 * 11 9 8 32 32 H 1.08998 * 109.46828 * 60.00392 * 11 9 8 33 33 H 0.96998 * 119.99907 * 0.02562 * 12 11 9 34 34 H 1.08000 * 124.58798 * 359.97157 * 16 15 13 35 35 H 1.09007 * 109.46833 * 239.97382 * 19 18 17 36 36 H 0.96702 * 114.00467 * 299.99793 * 20 19 18 37 37 H 1.48500 * 110.00185 * 180.02562 * 21 19 18 38 38 H 1.48507 * 110.00119 * 301.31928 * 21 19 18 39 39 H 1.07997 * 123.45666 * 180.23149 * 22 18 17 40 40 H 1.08997 * 113.61668 * 89.11298 * 23 9 8 41 41 H 1.08994 * 113.61387 * 220.02033 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9372 0.0012 7 1 3.4710 3.5822 0.7560 8 6 5.4584 2.9679 0.0011 9 6 5.3829 2.9445 -1.5347 10 9 5.3621 1.6543 -2.0752 11 6 6.4076 3.8562 -2.2126 12 7 6.2567 3.7640 -3.6669 13 6 7.0586 4.4857 -4.4747 14 8 7.9080 5.2133 -3.9963 15 6 6.9066 4.3934 -5.9359 16 6 5.9815 3.6044 -6.5453 17 16 6.0880 3.7447 -8.2406 18 6 7.4098 4.8947 -8.1376 19 6 8.0933 5.5248 -9.3237 20 8 7.9476 6.9448 -9.2584 21 14 7.3183 4.8926 -10.8954 22 6 7.7197 5.1370 -6.8696 23 6 3.9881 3.5774 -1.3974 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.9129 2.0746 0.4296 30 1 5.8767 3.8904 0.4037 31 1 6.2444 4.8859 -1.8946 32 1 7.4135 3.5443 -1.9316 33 1 5.5792 3.1841 -4.0483 34 1 5.2752 2.9742 -6.0253 35 1 9.1525 5.2673 -9.3117 36 1 7.0290 7.2467 -9.2650 37 1 7.9840 5.5060 -12.0725 38 1 7.4350 3.4135 -10.9601 39 1 8.5022 5.8173 -6.5675 40 1 4.0031 4.6671 -1.3771 41 1 3.2558 3.1762 -2.0979 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16501616_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:35:01 Heat of formation + Delta-G solvation = -138.498816 kcal Electronic energy + Delta-G solvation = -27349.827180 eV Core-core repulsion = 23045.736737 eV Total energy + Delta-G solvation = -4304.090444 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.90551 -41.82377 -41.04801 -39.25347 -38.78248 -37.52261 -37.11040 -35.75291 -32.71692 -32.04538 -29.86096 -27.13062 -26.98989 -26.56930 -25.06096 -23.71508 -22.40722 -22.07998 -20.79073 -20.39324 -19.19142 -18.71401 -18.22011 -17.89835 -17.67918 -17.43183 -17.08134 -16.98345 -16.49978 -16.34108 -16.02401 -15.91813 -15.44248 -15.14554 -14.94588 -14.65282 -14.46190 -14.45299 -14.14552 -13.95982 -13.73128 -13.67689 -13.48641 -13.34020 -13.07221 -12.92622 -12.68752 -12.63861 -12.49276 -12.30533 -11.96468 -11.63177 -11.58032 -11.51586 -11.43882 -11.08082 -10.61693 -10.35444 -10.00202 -9.47014 -5.12918 -0.37037 0.36514 0.68066 0.79872 1.05618 1.22430 1.56131 1.60036 1.89816 1.94982 2.21310 2.93228 3.05629 3.17283 3.31014 3.39095 3.50942 3.65023 3.79862 3.86810 3.94412 3.95591 4.02316 4.24669 4.28791 4.29757 4.36856 4.41172 4.57479 4.58544 4.67032 4.69078 4.71983 4.82175 4.85577 4.87658 4.98086 5.09238 5.12647 5.14851 5.22831 5.42194 6.31262 6.65214 6.69527 7.03104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.358 6.358 4 C 0.469 3.531 5 O -0.529 6.529 6 C -0.114 4.114 7 H 0.156 0.844 8 C -0.129 4.129 9 C 0.068 3.932 10 F -0.199 7.199 11 C 0.115 3.885 12 N -0.713 5.713 13 C 0.578 3.422 14 O -0.578 6.578 15 C -0.182 4.182 16 C -0.193 4.193 17 S 0.251 5.749 18 C -0.248 4.248 19 C -0.037 4.037 20 O -0.551 6.551 21 Si 0.739 3.261 22 C -0.074 4.074 23 C -0.121 4.121 24 H 0.095 0.905 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.152 0.848 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.412 0.588 34 H 0.198 0.802 35 H 0.114 0.886 36 H 0.397 0.603 37 H -0.273 1.273 38 H -0.256 1.256 39 H 0.135 0.865 40 H 0.152 0.848 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.282 0.997 -0.831 9.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 O -0.275 6.275 4 C 0.313 3.687 5 O -0.418 6.418 6 C -0.133 4.133 7 H 0.173 0.827 8 C -0.167 4.167 9 C 0.049 3.951 10 F -0.179 7.179 11 C -0.008 4.008 12 N -0.365 5.365 13 C 0.366 3.634 14 O -0.459 6.459 15 C -0.200 4.200 16 C -0.331 4.331 17 S 0.518 5.482 18 C -0.364 4.364 19 C -0.149 4.149 20 O -0.360 6.360 21 Si 0.641 3.359 22 C -0.103 4.103 23 C -0.158 4.158 24 H 0.113 0.887 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.169 0.831 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.249 0.751 34 H 0.215 0.785 35 H 0.131 0.869 36 H 0.248 0.752 37 H -0.198 1.198 38 H -0.182 1.182 39 H 0.153 0.847 40 H 0.170 0.830 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.532 0.027 -2.425 8.870 hybrid contribution 1.354 -0.321 1.727 2.218 sum -7.178 -0.294 -0.698 7.217 Atomic orbital electron populations 1.21821 0.90499 1.04259 1.03856 1.23230 0.96988 0.79340 1.02284 1.86492 1.24027 1.33387 1.83618 1.23692 0.80699 0.92769 0.71576 1.90699 1.61103 1.44165 1.45829 1.22165 0.97490 0.90306 1.03312 0.82671 1.23647 0.93621 1.06666 0.92767 1.22440 0.98343 0.78922 0.95393 1.92888 1.97410 1.40357 1.87272 1.21867 0.98908 1.00883 0.79174 1.45593 1.37820 1.46490 1.06618 1.17841 0.80297 0.79065 0.86241 1.90801 1.36379 1.41283 1.77446 1.20088 1.02112 1.04599 0.93210 1.26141 1.02546 1.02846 1.01607 1.82929 1.27710 1.37750 0.99828 1.24917 1.05281 1.07266 0.98977 1.24683 1.03239 0.84640 1.02301 1.86501 1.34044 1.18530 1.96878 0.94171 0.88695 0.78742 0.74278 1.20963 0.99450 0.98916 0.90964 1.23725 0.94129 1.04038 0.93925 0.88655 0.91130 0.91087 0.91713 0.91597 0.90346 0.83052 0.87138 0.91261 0.75141 0.78515 0.86856 0.75248 1.19810 1.18159 0.84738 0.83027 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.63 10.29 71.98 0.74 1.37 16 2 C 0.06 0.05 6.19 71.98 0.45 0.49 16 3 O -0.36 -0.95 10.22 -51.38 -0.53 -1.48 16 4 C 0.47 1.72 6.93 71.24 0.49 2.21 16 5 O -0.53 -5.84 14.48 21.97 0.32 -5.52 16 6 C -0.11 0.56 4.46 -10.95 -0.05 0.51 16 7 H 0.16 -1.64 8.14 -2.39 -0.02 -1.66 16 8 C -0.13 0.58 6.92 31.12 0.22 0.80 16 9 C 0.07 -0.18 1.66 -10.27 -0.02 -0.20 16 10 F -0.20 -1.04 15.12 44.97 0.68 -0.36 16 11 C 0.12 -0.19 5.37 86.38 0.46 0.27 16 12 N -0.71 0.02 5.44 -466.60 -2.54 -2.52 16 13 C 0.58 3.74 7.79 86.60 0.67 4.42 16 14 O -0.58 -8.60 16.80 -4.15 -0.07 -8.67 16 15 C -0.18 -0.57 5.98 -19.87 -0.12 -0.69 16 16 C -0.19 0.67 10.38 67.30 0.70 1.37 16 17 S 0.25 -1.20 20.18 -56.49 -1.14 -2.34 16 18 C -0.25 -0.02 5.69 24.51 0.14 0.12 16 19 C -0.04 0.02 2.95 71.24 0.21 0.23 16 20 O -0.55 -0.32 12.84 -148.98 -1.91 -2.23 16 21 Si 0.74 -2.65 30.91 68.60 2.12 -0.53 16 22 C -0.07 -0.36 9.91 22.67 0.22 -0.13 16 23 C -0.12 0.95 7.11 31.18 0.22 1.17 16 24 H 0.09 -0.66 8.14 -2.39 -0.02 -0.67 16 25 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 27 H 0.06 0.12 8.13 -2.39 -0.02 0.10 16 28 H 0.07 0.10 8.13 -2.39 -0.02 0.09 16 29 H 0.08 0.08 7.43 -2.39 -0.02 0.07 16 30 H 0.15 -1.69 8.10 -2.39 -0.02 -1.71 16 31 H 0.11 -0.52 7.95 -2.39 -0.02 -0.54 16 32 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.41 -1.75 6.68 -92.71 -0.62 -2.37 16 34 H 0.20 -1.89 7.01 -2.91 -0.02 -1.91 16 35 H 0.11 0.10 7.96 -2.38 -0.02 0.09 16 36 H 0.40 -3.17 8.70 -74.06 -0.64 -3.81 16 37 H -0.27 -0.85 7.11 99.48 0.71 -0.15 16 38 H -0.26 0.08 7.11 99.48 0.71 0.78 16 39 H 0.13 1.15 8.06 -2.91 -0.02 1.12 16 40 H 0.15 -2.07 7.97 -2.39 -0.02 -2.09 16 41 H 0.09 -0.63 8.10 -2.39 -0.02 -0.64 16 Total: 0.00 -26.74 366.76 1.13 -25.61 By element: Atomic # 1 Polarization: -13.75 SS G_CDS: -0.14 Total: -13.89 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 4.34 Total: 11.94 kcal Atomic # 7 Polarization: 0.02 SS G_CDS: -2.54 Total: -2.52 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -2.19 Total: -17.91 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.68 Total: -0.36 kcal Atomic # 14 Polarization: -2.65 SS G_CDS: 2.12 Total: -0.53 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -1.14 Total: -2.34 kcal Total: -26.74 1.13 -25.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16501616_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.893 kcal (2) G-P(sol) polarization free energy of solvation -26.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds