Wall clock time and date at job start Sun Mar 7 2021 05:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35531 * 125.67898 * 2 1 4 4 C 1.35454 * 108.87303 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.07109 * 180.02562 * 4 3 2 6 6 O 1.42897 * 109.47126 * 244.97483 * 5 4 3 7 7 Si 1.86307 * 109.46848 * 4.97405 * 5 4 3 8 8 C 1.39846 * 107.86313 * 359.73973 * 4 3 2 9 9 C 1.37656 * 125.67674 * 180.02562 * 2 1 3 10 10 C 1.46683 * 126.23109 * 359.97438 * 9 2 1 11 11 O 1.21687 * 120.00288 * 5.20720 * 10 9 2 12 12 N 1.34775 * 119.99588 * 185.20659 * 10 9 2 13 13 C 1.46504 * 119.99856 * 174.47648 * 12 10 9 14 14 H 1.08998 * 112.84916 * 334.66902 * 13 12 10 15 15 C 1.53779 * 113.61216 * 105.86285 * 13 12 10 16 16 C 1.54053 * 86.98534 * 89.16221 * 15 13 12 17 17 H 1.08994 * 113.69263 * 270.87224 * 16 15 13 18 18 C 1.52998 * 113.62006 * 139.97348 * 16 15 13 19 19 O 1.42902 * 109.47125 * 87.50572 * 18 16 15 20 20 C 1.35900 * 117.00517 * 180.02562 * 19 18 16 21 21 C 1.38738 * 120.05073 * 359.72532 * 20 19 18 22 22 C 1.38144 * 119.93968 * 179.74365 * 21 20 19 23 23 C 1.38271 * 120.05769 * 0.51025 * 22 21 20 24 24 C 1.38265 * 120.11042 * 359.76890 * 23 22 21 25 25 C 1.38147 * 120.05436 * 359.97184 * 24 23 22 26 26 C 1.53777 * 113.61362 * 203.47052 * 13 12 10 27 27 H 1.08997 * 109.47105 * 271.91751 * 1 2 3 28 28 H 1.09000 * 109.46799 * 31.92301 * 1 2 3 29 29 H 1.09008 * 109.47082 * 151.91996 * 1 2 3 30 30 H 1.07998 * 125.56390 * 0.05220 * 3 2 1 31 31 H 1.08998 * 109.47018 * 124.97155 * 5 4 3 32 32 H 0.96699 * 114.00145 * 60.00053 * 6 5 4 33 33 H 1.48495 * 110.00076 * 58.67981 * 7 5 4 34 34 H 1.48502 * 109.99632 * 180.02562 * 7 5 4 35 35 H 1.07998 * 126.45812 * 180.30574 * 8 4 3 36 36 H 0.97001 * 120.00638 * 354.20115 * 12 10 9 37 37 H 1.08999 * 113.61242 * 203.66084 * 15 13 12 38 38 H 1.08996 * 113.61771 * 334.57106 * 15 13 12 39 39 H 1.09002 * 109.47743 * 207.50556 * 18 16 15 40 40 H 1.08999 * 109.47439 * 327.50778 * 18 16 15 41 41 H 1.07992 * 120.02752 * 359.97438 * 21 20 19 42 42 H 1.07995 * 119.97225 * 180.27751 * 22 21 20 43 43 H 1.08000 * 119.94395 * 179.74388 * 23 22 21 44 44 H 1.08000 * 119.97121 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.02544 * 180.02562 * 25 24 23 46 46 H 1.09001 * 113.61540 * 25.43461 * 26 13 12 47 47 H 1.09005 * 113.61384 * 156.33769 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7093 -0.0006 5 6 4.7537 1.6188 -0.0002 6 8 5.4772 1.4527 -1.2213 7 14 4.1927 3.3887 0.1534 8 6 3.5780 -0.6889 0.0051 9 6 2.2678 -1.1182 -0.0005 10 6 1.8123 -2.5125 -0.0006 11 8 0.6257 -2.7650 -0.0959 12 7 2.7080 -3.5140 0.1048 13 6 2.2470 -4.8993 0.2266 14 1 1.2461 -4.9765 0.6513 15 6 2.4378 -5.7269 -1.0553 16 6 3.8351 -6.0885 -0.5168 17 1 4.6133 -5.3839 -0.8101 18 6 4.2293 -7.5459 -0.7644 19 8 4.8455 -7.6611 -2.0486 20 6 5.2574 -8.8998 -2.4265 21 6 5.0773 -9.9813 -1.5763 22 6 5.4921 -11.2404 -1.9649 23 6 6.0958 -11.4215 -3.1956 24 6 6.2816 -10.3443 -4.0423 25 6 5.8638 -9.0841 -3.6605 26 6 3.2719 -5.8334 0.8912 27 1 -0.3633 0.0344 1.0271 28 1 -0.3633 0.8723 -0.5434 29 1 -0.3634 -0.9068 -0.4838 30 1 1.9082 2.1235 0.0008 31 1 5.3991 1.3678 0.8415 32 1 4.9634 1.6590 -2.0141 33 1 3.4118 3.5673 1.4038 34 1 5.3685 4.2958 0.1543 35 1 4.4583 -1.3145 0.0108 36 1 3.6580 -3.3181 0.0960 37 1 1.7638 -6.5804 -1.1283 38 1 2.4608 -5.1254 -1.9640 39 1 4.9304 -7.8686 0.0053 40 1 3.3389 -8.1738 -0.7311 41 1 4.6100 -9.8395 -0.6131 42 1 5.3481 -12.0833 -1.3054 43 1 6.4231 -12.4060 -3.4959 44 1 6.7530 -10.4884 -5.0032 45 1 6.0088 -8.2431 -4.3224 46 1 3.9679 -5.3178 1.5530 47 1 2.8255 -6.7160 1.3495 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534226_10803934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:10:39 Heat of formation + Delta-G solvation = 2.847358 kcal Electronic energy + Delta-G solvation = -28628.708797 eV Core-core repulsion = 24552.315694 eV Total energy + Delta-G solvation = -4076.393103 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.57723 -41.39163 -40.69081 -39.21615 -38.05901 -37.65551 -34.84333 -33.71434 -32.00324 -31.28104 -30.69812 -29.05518 -28.31892 -26.86727 -25.77982 -24.86358 -23.78434 -23.23200 -22.53976 -21.34016 -20.61635 -20.25928 -19.16272 -18.84439 -17.80019 -17.33761 -16.94370 -16.89936 -16.77672 -16.73258 -16.58426 -15.92918 -15.68916 -15.58689 -15.31384 -15.16117 -14.99832 -14.78260 -14.40216 -14.32987 -14.05059 -14.04545 -13.67832 -13.56620 -13.46019 -13.33330 -13.20151 -13.10808 -12.50903 -12.22779 -12.17522 -12.08186 -11.91827 -11.76748 -11.66045 -11.28270 -11.04249 -10.31625 -10.17398 -9.92058 -9.71259 -9.27247 -9.11835 -5.03417 0.42187 0.42342 0.54257 1.35856 1.49370 1.51796 1.68817 2.00970 2.15931 2.25220 2.33614 2.88726 3.28942 3.39301 3.58023 3.63707 3.69863 3.71841 3.77932 3.89806 3.90721 3.95617 4.13945 4.17570 4.22987 4.24707 4.27199 4.31038 4.35323 4.49036 4.53665 4.56311 4.58435 4.62921 4.65215 4.69333 4.75078 4.75237 4.91761 4.96820 5.04718 5.09122 5.16866 5.38318 5.46733 5.50313 5.64199 5.65714 5.85725 5.88251 6.10296 6.41479 6.49051 6.69548 7.13610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.403 5.403 3 C 0.028 3.972 4 C -0.208 4.208 5 C -0.030 4.030 6 O -0.543 6.543 7 Si 0.683 3.317 8 C -0.112 4.112 9 C -0.055 4.055 10 C 0.595 3.405 11 O -0.544 6.544 12 N -0.702 5.702 13 C 0.125 3.875 14 H 0.107 0.893 15 C -0.144 4.144 16 C -0.111 4.111 17 H 0.103 0.897 18 C 0.069 3.931 19 O -0.313 6.313 20 C 0.129 3.871 21 C -0.211 4.211 22 C -0.081 4.081 23 C -0.160 4.160 24 C -0.080 4.080 25 C -0.154 4.154 26 C -0.136 4.136 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.174 0.826 31 H 0.110 0.890 32 H 0.378 0.622 33 H -0.257 1.257 34 H -0.256 1.256 35 H 0.145 0.855 36 H 0.405 0.595 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.081 0.919 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.959 0.227 0.173 1.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.075 5.075 3 C -0.109 4.109 4 C -0.214 4.214 5 C -0.142 4.142 6 O -0.348 6.348 7 Si 0.585 3.415 8 C -0.138 4.138 9 C -0.168 4.168 10 C 0.384 3.616 11 O -0.423 6.423 12 N -0.353 5.353 13 C 0.019 3.981 14 H 0.125 0.875 15 C -0.183 4.183 16 C -0.129 4.129 17 H 0.121 0.879 18 C -0.006 4.006 19 O -0.227 6.227 20 C 0.084 3.916 21 C -0.230 4.230 22 C -0.099 4.099 23 C -0.178 4.178 24 C -0.098 4.098 25 C -0.172 4.172 26 C -0.174 4.174 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.127 0.873 30 H 0.191 0.809 31 H 0.128 0.872 32 H 0.225 0.775 33 H -0.182 1.182 34 H -0.180 1.180 35 H 0.162 0.838 36 H 0.240 0.760 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.100 0.900 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.728 0.772 0.936 2.111 hybrid contribution 0.591 -0.600 0.508 0.983 sum -1.137 0.172 1.444 1.846 Atomic orbital electron populations 1.22416 0.75503 1.06013 1.04189 1.43810 1.07028 1.04666 1.52015 1.21868 0.90048 0.91665 1.07290 1.19786 0.93731 0.94855 1.13075 1.24315 0.92809 1.07342 0.89760 1.86484 1.41196 1.91987 1.15159 0.95097 0.83497 0.75941 0.86971 1.21191 0.94248 0.94672 1.03698 1.19970 0.90311 0.87520 1.19002 1.16938 0.85487 0.83462 0.75732 1.90792 1.16351 1.84760 1.50408 1.45291 1.09810 1.05416 1.74823 1.21786 0.99262 0.79768 0.97246 0.87529 1.23560 0.95946 1.00313 0.98434 1.22703 0.97989 0.95295 0.96930 0.87904 1.22851 0.97026 0.97340 0.83388 1.86080 1.73817 1.26787 1.35967 1.19035 0.94701 0.83901 0.93948 1.21271 1.07456 0.93342 1.00890 1.20992 0.96211 0.96414 0.96245 1.21120 1.02373 0.99286 0.95010 1.21026 0.97598 0.91735 0.99472 1.20491 1.03033 0.98410 0.95283 1.23338 0.98321 0.99942 0.95762 0.90386 0.89450 0.87322 0.80931 0.87218 0.77534 1.18225 1.18031 0.83757 0.75978 0.88781 0.90427 0.91750 0.91658 0.85571 0.85748 0.85802 0.85253 0.85183 0.89994 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.05 10.69 59.85 0.64 0.59 16 2 N -0.40 -0.35 3.16 -120.23 -0.38 -0.73 16 3 C 0.03 -0.01 9.94 -16.91 -0.17 -0.18 16 4 C -0.21 -0.06 5.43 -105.02 -0.57 -0.63 16 5 C -0.03 0.01 3.02 36.00 0.11 0.12 16 6 O -0.54 -0.21 12.88 -35.23 -0.45 -0.67 16 7 Si 0.68 -0.92 30.60 -169.99 -5.20 -6.12 16 8 C -0.11 -0.09 10.29 -39.12 -0.40 -0.49 16 9 C -0.05 -0.10 6.89 -81.98 -0.56 -0.66 16 10 C 0.60 1.44 7.77 -12.85 -0.10 1.34 16 11 O -0.54 -2.81 14.28 5.20 0.07 -2.73 16 12 N -0.70 0.22 5.25 -54.32 -0.29 -0.07 16 13 C 0.12 -0.10 4.26 -67.12 -0.29 -0.39 16 14 H 0.11 0.05 7.57 -51.93 -0.39 -0.34 16 15 C -0.14 0.11 7.45 -25.78 -0.19 -0.08 16 16 C -0.11 0.19 3.90 -89.67 -0.35 -0.16 16 17 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 18 C 0.07 -0.06 4.58 37.16 0.17 0.11 16 19 O -0.31 -0.67 10.14 -19.43 -0.20 -0.87 16 20 C 0.13 0.32 6.69 -39.22 -0.26 0.05 16 21 C -0.21 -0.28 9.04 -39.43 -0.36 -0.64 16 22 C -0.08 -0.07 10.04 -39.60 -0.40 -0.47 16 23 C -0.16 -0.15 10.04 -39.56 -0.40 -0.54 16 24 C -0.08 -0.09 10.04 -39.60 -0.40 -0.48 16 25 C -0.15 -0.32 9.99 -39.43 -0.39 -0.71 16 26 C -0.14 0.39 7.38 -25.92 -0.19 0.20 16 27 H 0.08 -0.10 8.14 -51.93 -0.42 -0.53 16 28 H 0.09 -0.30 8.14 -51.93 -0.42 -0.72 16 29 H 0.11 0.10 6.11 -51.92 -0.32 -0.22 16 30 H 0.17 -0.58 6.21 -52.49 -0.33 -0.91 16 31 H 0.11 0.03 7.96 -51.93 -0.41 -0.38 16 32 H 0.38 -1.24 8.70 45.56 0.40 -0.85 16 33 H -0.26 -0.25 7.11 56.52 0.40 0.15 16 34 H -0.26 -0.54 7.11 56.52 0.40 -0.14 16 35 H 0.14 -0.12 7.45 -52.49 -0.39 -0.51 16 36 H 0.40 -0.90 7.61 -40.82 -0.31 -1.21 16 37 H 0.09 -0.11 7.90 -51.93 -0.41 -0.52 16 38 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 39 H 0.06 -0.10 7.65 -51.93 -0.40 -0.50 16 40 H 0.07 -0.10 7.38 -51.93 -0.38 -0.48 16 41 H 0.13 -0.07 6.30 -52.49 -0.33 -0.40 16 42 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 43 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 44 H 0.13 -0.13 8.06 -52.49 -0.42 -0.55 16 45 H 0.13 0.14 8.06 -52.49 -0.42 -0.28 16 46 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 47 H 0.10 -0.38 8.10 -51.93 -0.42 -0.81 16 LS Contribution 389.83 15.07 5.87 5.87 Total: 0.00 -8.89 389.83 -11.38 -20.27 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: -6.70 Total: -11.93 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -4.11 Total: -3.02 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -0.67 Total: -0.80 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.58 Total: -4.27 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: -5.20 Total: -6.12 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -8.89 -11.38 -20.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_10803934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.115 kcal (2) G-P(sol) polarization free energy of solvation -8.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds