Wall clock time and date at job start Sun Mar 7 2021 05:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 5 5 C 1.38238 * 120.00008 * 244.72486 * 4 2 1 6 6 C 1.38232 * 120.00122 * 179.78729 * 5 4 2 7 7 C 1.38232 * 119.99912 * 0.43794 * 6 5 4 8 8 C 1.50707 * 119.99901 * 179.83110 * 7 6 5 9 9 C 1.50695 * 109.47388 * 269.98155 * 8 7 6 10 10 O 1.21277 * 120.00094 * 0.02562 * 9 8 7 11 11 N 1.34770 * 119.99994 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00089 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.84798 * 25.33008 * 12 11 9 14 14 C 1.53778 * 113.61561 * 156.52846 * 12 11 9 15 15 C 1.53788 * 87.08182 * 89.11290 * 14 12 11 16 16 H 1.08993 * 113.61224 * 270.88461 * 15 14 12 17 17 C 1.52999 * 113.61138 * 140.06190 * 15 14 12 18 18 O 1.42902 * 109.46569 * 175.00369 * 17 15 14 19 19 C 1.35908 * 116.99715 * 179.97438 * 18 17 15 20 20 C 1.38733 * 120.05615 * 359.73003 * 19 18 17 21 21 C 1.38144 * 119.94102 * 179.69755 * 20 19 18 22 22 C 1.38258 * 120.05907 * 0.59372 * 21 20 19 23 23 C 1.38268 * 120.11090 * 359.68169 * 22 21 20 24 24 C 1.38151 * 120.05606 * 0.02562 * 23 22 21 25 25 C 1.53779 * 113.61162 * 254.13828 * 12 11 9 26 26 C 1.38228 * 120.00136 * 359.81509 * 7 6 5 27 27 C 1.38234 * 120.00438 * 64.99275 * 4 2 1 28 28 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 29 29 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 30 30 H 1.48502 * 109.99925 * 178.68072 * 3 2 1 31 31 H 1.48497 * 109.99842 * 299.99834 * 3 2 1 32 32 H 1.07998 * 119.99418 * 0.02562 * 5 4 2 33 33 H 1.08004 * 120.00053 * 180.27690 * 6 5 4 34 34 H 1.09007 * 109.46747 * 29.98430 * 8 7 6 35 35 H 1.08997 * 109.46843 * 149.97735 * 8 7 6 36 36 H 0.96998 * 120.00168 * 0.02562 * 11 9 8 37 37 H 1.08998 * 113.61726 * 203.66361 * 14 12 11 38 38 H 1.09000 * 113.61582 * 334.56570 * 14 12 11 39 39 H 1.09000 * 109.47444 * 295.00014 * 17 15 14 40 40 H 1.09001 * 109.47348 * 55.00477 * 17 15 14 41 41 H 1.07997 * 120.02617 * 359.97438 * 20 19 18 42 42 H 1.08008 * 119.96842 * 180.31599 * 21 20 19 43 43 H 1.07996 * 119.95109 * 179.69793 * 22 21 20 44 44 H 1.08001 * 119.97450 * 179.97438 * 23 22 21 45 45 H 1.07997 * 120.02767 * 179.97438 * 24 23 22 46 46 H 1.08994 * 113.61631 * 25.42707 * 25 12 11 47 47 H 1.09002 * 113.61352 * 156.33472 * 25 12 11 48 48 H 1.08003 * 120.00447 * 179.97438 * 26 7 6 49 49 H 1.08002 * 119.99628 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.6436 -0.0136 2.1885 6 6 3.1006 -0.6643 3.3193 7 6 2.8531 -2.0139 3.4876 8 6 3.3546 -2.7241 4.7186 9 6 4.7356 -3.2677 4.4574 10 8 5.2612 -3.0950 3.3782 11 7 5.3871 -3.9449 5.4235 12 6 6.7300 -4.4728 5.1698 13 1 7.2630 -3.9199 4.3963 14 6 7.5559 -4.6957 6.4477 15 6 6.9516 -6.1091 6.4974 16 1 6.0132 -6.1635 7.0491 17 6 7.9513 -7.1885 6.9173 18 8 7.2742 -8.4402 7.0468 19 6 8.0239 -9.5120 7.4158 20 6 9.3844 -9.3631 7.6431 21 6 10.1431 -10.4528 8.0243 22 6 9.5501 -11.6935 8.1674 23 6 8.1955 -11.8458 7.9359 24 6 7.4312 -10.7579 7.5604 25 6 6.7652 -5.9975 4.9722 26 6 2.1454 -2.7119 2.5271 27 6 1.6846 -2.0602 1.3984 28 1 -0.3933 0.4417 0.7650 29 1 1.7924 -0.5139 -0.8900 30 1 3.5347 1.7702 0.0321 31 1 1.5616 2.4678 -1.2085 32 1 2.8398 1.0400 2.0554 33 1 3.6533 -0.1189 4.0700 34 1 3.3917 -2.0233 5.5527 35 1 2.6812 -3.5454 4.9638 36 1 4.9669 -4.0827 6.2868 37 1 8.6326 -4.6869 6.2788 38 1 7.2518 -4.0614 7.2803 39 1 8.7322 -7.2743 6.1617 40 1 8.3990 -6.9170 7.8733 41 1 9.8490 -8.3952 7.5266 42 1 11.2013 -10.3363 8.2063 43 1 10.1458 -12.5453 8.4607 44 1 7.7346 -12.8161 8.0479 45 1 6.3732 -10.8775 7.3793 46 1 5.8233 -6.4133 4.6145 47 1 7.6263 -6.3439 4.4006 48 1 1.9523 -3.7664 2.6583 49 1 1.1315 -2.6055 0.6479 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534226_12335836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:11:01 Heat of formation + Delta-G solvation = -24.900888 kcal Electronic energy + Delta-G solvation = -29157.873855 eV Core-core repulsion = 25017.477268 eV Total energy + Delta-G solvation = -4140.396587 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.58266 -41.04546 -40.45745 -39.37303 -38.11573 -37.60722 -34.56132 -33.91465 -32.02825 -31.94349 -31.10110 -29.95499 -28.83684 -26.74931 -25.89388 -24.42778 -23.82080 -23.40188 -22.66020 -22.36752 -21.39708 -20.30604 -19.19090 -18.46156 -18.20996 -17.38784 -17.18870 -16.93031 -16.87671 -16.75179 -16.52355 -16.27473 -16.03573 -15.69103 -15.44662 -15.27589 -15.08889 -14.72797 -14.63483 -14.49586 -14.35994 -14.10203 -14.08937 -13.56921 -13.50606 -13.26288 -13.20847 -12.96933 -12.81329 -12.51862 -12.26871 -12.11397 -12.06645 -12.00755 -11.73314 -11.70961 -11.62096 -11.19750 -11.02305 -10.45214 -10.08745 -9.98317 -9.88275 -9.62947 -9.19298 -5.04656 0.22954 0.36161 0.44610 0.46582 1.28613 1.60071 1.61580 1.92959 2.11763 2.17533 2.77806 2.82024 3.40825 3.49732 3.50568 3.62813 3.74834 3.78092 3.79601 3.89254 3.90747 3.96625 4.02291 4.05169 4.21568 4.27789 4.31257 4.34837 4.42628 4.46389 4.47587 4.48506 4.55034 4.61021 4.67726 4.70157 4.71367 4.73521 4.83162 4.98481 5.01565 5.03635 5.05822 5.08091 5.17286 5.32765 5.37026 5.45818 5.52817 5.58340 5.58562 5.58823 5.83874 6.01075 6.44329 6.53386 6.75388 7.25367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.076 4.076 3 Si 0.783 3.217 4 C -0.129 4.129 5 C -0.121 4.121 6 C -0.109 4.109 7 C -0.072 4.072 8 C -0.098 4.098 9 C 0.515 3.485 10 O -0.581 6.581 11 N -0.702 5.702 12 C 0.115 3.885 13 H 0.082 0.918 14 C -0.118 4.118 15 C -0.101 4.101 16 H 0.106 0.894 17 C 0.064 3.936 18 O -0.330 6.330 19 C 0.112 3.888 20 C -0.219 4.219 21 C -0.089 4.089 22 C -0.169 4.169 23 C -0.087 4.087 24 C -0.174 4.174 25 C -0.149 4.149 26 C -0.117 4.117 27 C -0.109 4.109 28 H 0.395 0.605 29 H 0.099 0.901 30 H -0.293 1.293 31 H -0.297 1.297 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.418 0.582 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.147 0.853 45 H 0.131 0.869 46 H 0.059 0.941 47 H 0.089 0.911 48 H 0.129 0.871 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.438 1.059 8.890 8.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.186 4.186 3 Si 0.689 3.311 4 C -0.129 4.129 5 C -0.139 4.139 6 C -0.127 4.127 7 C -0.072 4.072 8 C -0.137 4.137 9 C 0.303 3.697 10 O -0.460 6.460 11 N -0.355 5.355 12 C 0.009 3.991 13 H 0.100 0.900 14 C -0.156 4.156 15 C -0.119 4.119 16 H 0.124 0.876 17 C -0.011 4.011 18 O -0.244 6.244 19 C 0.067 3.933 20 C -0.237 4.237 21 C -0.107 4.107 22 C -0.187 4.187 23 C -0.105 4.105 24 C -0.192 4.192 25 C -0.187 4.187 26 C -0.135 4.135 27 C -0.127 4.127 28 H 0.245 0.755 29 H 0.117 0.883 30 H -0.220 1.220 31 H -0.225 1.225 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.256 0.744 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.149 0.851 46 H 0.078 0.922 47 H 0.107 0.893 48 H 0.147 0.853 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.160 1.483 7.127 7.371 hybrid contribution 0.162 -0.947 -0.331 1.017 sum 1.323 0.536 6.796 6.944 Atomic orbital electron populations 1.86461 1.17153 1.82243 1.50477 1.25201 0.85345 1.11031 0.97030 0.93755 0.77500 0.75209 0.84625 1.20407 1.00281 0.95099 0.97131 1.21166 0.98443 1.00067 0.94195 1.21252 0.98990 0.94265 0.98156 1.19586 0.97447 0.94097 0.96116 1.20768 0.92428 1.02861 0.97615 1.21076 0.88140 0.77006 0.83507 1.90746 1.69556 1.59403 1.26311 1.45598 1.16994 1.55789 1.17080 1.21761 0.83975 0.94149 0.99208 0.89957 1.23261 1.00947 0.94253 0.97129 1.22640 0.99613 0.93384 0.96255 0.87551 1.23030 0.95570 0.80678 1.01789 1.86051 1.38142 1.16858 1.83394 1.19256 0.90618 0.87850 0.95604 1.21505 0.92989 1.01417 1.07825 1.21318 1.00779 0.92266 0.96339 1.21425 0.95435 0.98407 1.03440 1.21302 0.94150 0.98690 0.96365 1.20709 1.01355 0.90776 1.06385 1.23560 1.02561 0.96131 0.96484 1.21229 0.98179 1.00169 0.93937 1.21084 0.99475 0.94281 0.97900 0.75465 0.88327 1.21997 1.22504 0.83906 0.83769 0.84494 0.85391 0.74436 0.87343 0.88436 0.91368 0.90575 0.84089 0.83887 0.84123 0.83573 0.85060 0.92190 0.89261 0.85274 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.56 12.83 -148.98 -1.91 -3.47 16 2 C -0.08 -0.23 2.80 71.23 0.20 -0.03 16 3 Si 0.78 0.32 29.80 68.60 2.04 2.36 16 4 C -0.13 -0.50 5.35 -19.87 -0.11 -0.61 16 5 C -0.12 -0.19 8.67 22.27 0.19 0.00 16 6 C -0.11 -0.11 9.70 22.27 0.22 0.11 16 7 C -0.07 -0.10 4.37 -19.87 -0.09 -0.19 16 8 C -0.10 0.50 5.83 29.10 0.17 0.67 16 9 C 0.51 0.71 7.82 87.66 0.69 1.39 16 10 O -0.58 -7.18 15.65 -3.02 -0.05 -7.22 16 11 N -0.70 2.94 5.26 -440.05 -2.32 0.62 16 12 C 0.12 -0.25 4.30 45.51 0.20 -0.06 16 13 H 0.08 0.24 7.50 -2.39 -0.02 0.23 16 14 C -0.12 0.91 7.38 31.12 0.23 1.14 16 15 C -0.10 0.50 3.90 -10.17 -0.04 0.46 16 16 H 0.11 -0.60 8.14 -2.39 -0.02 -0.62 16 17 C 0.06 -0.17 4.58 71.98 0.33 0.16 16 18 O -0.33 -1.35 10.14 -92.52 -0.94 -2.28 16 19 C 0.11 0.54 6.69 22.51 0.15 0.69 16 20 C -0.22 -0.46 9.04 22.37 0.20 -0.25 16 21 C -0.09 -0.09 10.04 22.25 0.22 0.14 16 22 C -0.17 -0.17 10.04 22.28 0.22 0.05 16 23 C -0.09 -0.16 10.04 22.26 0.22 0.07 16 24 C -0.17 -0.76 9.99 22.37 0.22 -0.53 16 25 C -0.15 0.19 7.45 31.21 0.23 0.42 16 26 C -0.12 -0.44 9.70 22.27 0.22 -0.22 16 27 C -0.11 -0.59 9.69 22.27 0.22 -0.37 16 28 H 0.40 -2.29 8.70 -74.06 -0.64 -2.94 16 29 H 0.10 0.51 7.96 -2.39 -0.02 0.49 16 30 H -0.29 -1.79 7.11 99.48 0.71 -1.08 16 31 H -0.30 -2.17 7.11 99.48 0.71 -1.46 16 32 H 0.14 -0.42 4.91 -2.91 -0.01 -0.43 16 33 H 0.14 -0.54 8.06 -2.91 -0.02 -0.56 16 34 H 0.14 -1.53 8.09 -2.38 -0.02 -1.55 16 35 H 0.13 -1.22 8.09 -2.39 -0.02 -1.23 16 36 H 0.42 -4.50 8.70 -92.71 -0.81 -5.30 16 37 H 0.11 -0.98 8.10 -2.39 -0.02 -1.00 16 38 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 39 H 0.07 -0.23 7.36 -2.39 -0.02 -0.25 16 40 H 0.08 -0.38 7.68 -2.39 -0.02 -0.39 16 41 H 0.14 -0.29 6.30 -2.91 -0.02 -0.31 16 42 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 43 H 0.14 -0.43 8.06 -2.91 -0.02 -0.46 16 44 H 0.15 -0.39 8.06 -2.91 -0.02 -0.42 16 45 H 0.13 0.36 8.06 -2.91 -0.02 0.34 16 46 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.09 -0.07 7.91 -2.39 -0.02 -0.09 16 48 H 0.13 0.13 8.06 -2.91 -0.02 0.11 16 49 H 0.12 0.61 8.06 -2.91 -0.02 0.58 16 Total: 0.00 -25.05 407.41 0.29 -24.77 By element: Atomic # 1 Polarization: -17.37 SS G_CDS: -0.44 Total: -17.82 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 3.90 Total: 3.04 kcal Atomic # 7 Polarization: 2.94 SS G_CDS: -2.32 Total: 0.62 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -2.90 Total: -12.98 kcal Atomic # 14 Polarization: 0.32 SS G_CDS: 2.04 Total: 2.36 kcal Total: -25.05 0.29 -24.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_12335836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.132 kcal (2) G-P(sol) polarization free energy of solvation -25.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds