Wall clock time and date at job start Sun Mar 7 2021 05:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86299 * 109.46922 * 2 1 4 4 C 1.50703 * 109.47237 * 119.99938 * 2 1 3 5 5 C 1.34707 * 125.65985 * 65.00742 * 4 2 1 6 6 C 1.40976 * 107.02478 * 179.97438 * 5 4 2 7 7 C 1.35934 * 106.74334 * 0.26138 * 6 5 4 8 8 C 1.47809 * 125.93206 * 179.70355 * 7 6 5 9 9 C 1.39175 * 120.00273 * 179.72597 * 8 7 6 10 10 C 1.39467 * 119.75774 * 179.70232 * 9 8 7 11 11 C 1.47568 * 120.12085 * 180.29275 * 10 9 8 12 12 O 1.21587 * 120.00283 * 180.27262 * 11 10 9 13 13 N 1.34779 * 120.00107 * 0.27375 * 11 10 9 14 14 C 1.46498 * 119.99981 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.85290 * 25.33251 * 14 13 11 16 16 C 1.53787 * 113.61192 * 156.53481 * 14 13 11 17 17 C 1.53776 * 87.08459 * 89.11397 * 16 14 13 18 18 H 1.08998 * 113.61658 * 270.88355 * 17 16 14 19 19 C 1.52996 * 113.61445 * 140.06318 * 17 16 14 20 20 O 1.42904 * 109.47112 * 175.00511 * 19 17 16 21 21 C 1.35903 * 116.99955 * 180.02562 * 20 19 17 22 22 C 1.38735 * 120.05641 * 359.71575 * 21 20 19 23 23 C 1.38147 * 119.94233 * 179.69938 * 22 21 20 24 24 C 1.38264 * 120.05473 * 0.60661 * 23 22 21 25 25 C 1.38263 * 120.11326 * 359.66716 * 24 23 22 26 26 C 1.38144 * 120.05456 * 0.03161 * 25 24 23 27 27 C 1.53783 * 113.61377 * 254.13711 * 14 13 11 28 28 C 1.40209 * 119.75875 * 0.56979 * 10 9 8 29 29 O 1.35644 * 120.00250 * 179.70663 * 28 10 9 30 30 C 1.38816 * 119.99309 * 359.71991 * 28 10 9 31 31 C 1.37771 * 120.24662 * 359.97438 * 30 28 10 32 32 O 1.34336 * 125.66729 * 245.00318 * 4 2 1 33 33 H 0.96701 * 114.00487 * 299.99191 * 1 2 3 34 34 H 1.09002 * 109.47163 * 240.00167 * 2 1 3 35 35 H 1.48498 * 110.00242 * 178.67743 * 3 2 1 36 36 H 1.48497 * 110.00131 * 300.00288 * 3 2 1 37 37 H 1.07995 * 126.48995 * 359.97438 * 5 4 2 38 38 H 1.08002 * 126.62536 * 179.97438 * 6 5 4 39 39 H 1.08004 * 120.12018 * 359.97438 * 9 8 7 40 40 H 0.97006 * 119.99720 * 0.02562 * 13 11 10 41 41 H 1.09005 * 113.60891 * 203.66723 * 16 14 13 42 42 H 1.08999 * 113.61215 * 334.47786 * 16 14 13 43 43 H 1.09004 * 109.47103 * 294.99717 * 19 17 16 44 44 H 1.08993 * 109.47473 * 54.99846 * 19 17 16 45 45 H 1.08000 * 120.02744 * 0.02562 * 22 21 20 46 46 H 1.08000 * 119.97025 * 180.27747 * 23 22 21 47 47 H 1.08001 * 119.93947 * 179.69877 * 24 23 22 48 48 H 1.08000 * 119.97568 * 180.02562 * 25 24 23 49 49 H 1.08000 * 120.02877 * 179.97438 * 26 25 24 50 50 H 1.09000 * 113.61627 * 25.43430 * 27 14 13 51 51 H 1.08994 * 113.61728 * 156.33500 * 27 14 13 52 52 H 0.96701 * 113.99895 * 270.01577 * 29 28 10 53 53 H 1.07997 * 119.87888 * 180.02562 * 30 28 10 54 54 H 1.07999 * 119.88175 * 180.02562 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7572 -2.0168 1.5092 6 6 2.3824 -2.2613 2.7488 7 6 2.9038 -1.0768 3.1648 8 6 3.6475 -0.8503 4.4219 9 6 4.1341 0.4182 4.7237 10 6 4.8296 0.6277 5.9143 11 6 5.3435 1.9708 6.2453 12 8 5.9539 2.1499 7.2815 13 7 5.1361 2.9991 5.3991 14 6 5.6457 4.3326 5.7280 15 1 6.5052 4.3040 6.3977 16 6 5.8520 5.2336 4.4990 17 6 4.3943 5.6867 4.6842 18 1 3.6730 5.0647 4.1542 19 6 4.1816 7.1821 4.4406 20 8 2.7872 7.4843 4.5214 21 6 2.4243 8.7795 4.3270 22 6 3.3909 9.7408 4.0698 23 6 3.0189 11.0556 3.8664 24 6 1.6856 11.4159 3.9314 25 6 0.7209 10.4608 4.1932 26 6 1.0872 9.1436 4.3911 27 6 4.5516 5.3180 6.1718 28 6 5.0440 -0.4439 6.7928 29 8 5.7251 -0.2471 7.9492 30 6 4.5594 -1.7063 6.4788 31 6 3.8668 -1.9117 5.3057 32 8 2.6272 -0.1461 2.2314 33 1 -0.3934 0.4416 0.7651 34 1 1.7923 -0.5138 -0.8900 35 1 3.5345 1.7704 0.0322 36 1 1.5613 2.4679 -1.2084 37 1 1.2370 -2.7399 0.8986 38 1 2.4329 -3.2060 3.2697 39 1 3.9698 1.2384 4.0405 40 1 4.6487 2.8563 4.5726 41 1 6.5802 6.0291 4.6581 42 1 6.0247 4.6802 3.5759 43 1 4.7214 7.7536 5.1957 44 1 4.5538 7.4455 3.4507 45 1 4.4329 9.4606 4.0234 46 1 3.7706 11.8035 3.6618 47 1 1.3973 12.4452 3.7769 48 1 -0.3200 10.7446 4.2430 49 1 0.3333 8.3979 4.5960 50 1 3.6736 4.8327 6.5980 51 1 4.9247 6.1365 6.7873 52 1 6.6799 -0.3777 7.8704 53 1 4.7253 -2.5302 7.1569 54 1 3.4921 -2.8962 5.0674 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534226_13259648.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:12:32 Heat of formation + Delta-G solvation = -36.597828 kcal Electronic energy + Delta-G solvation = -39324.504496 eV Core-core repulsion = 34161.557886 eV Total energy + Delta-G solvation = -5162.946610 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.165 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -43.70132 -41.80235 -41.13348 -40.37989 -39.09190 -38.14273 -38.01678 -37.76831 -34.75313 -34.14204 -32.75879 -32.37110 -31.94941 -30.97580 -30.04501 -29.05202 -26.74414 -26.39171 -25.61952 -24.40831 -23.60120 -23.32904 -22.94941 -22.52048 -21.93538 -21.22682 -20.36001 -19.63785 -19.17742 -19.10679 -18.33497 -17.73714 -17.48267 -17.24539 -17.07597 -16.89602 -16.77691 -16.64055 -16.35965 -16.28784 -15.99830 -15.72935 -15.49525 -15.48132 -15.09776 -15.01804 -14.53709 -14.40615 -14.34296 -14.33010 -14.06064 -13.95903 -13.87650 -13.57737 -13.50787 -13.44432 -13.22721 -13.12280 -13.08473 -12.76914 -12.49492 -12.22627 -12.10825 -12.04364 -11.89599 -11.70405 -11.59928 -11.18974 -11.06273 -10.94650 -10.65963 -10.47258 -10.32615 -10.07062 -9.95490 -9.16130 -8.91015 -5.03464 -0.56735 -0.21752 0.39007 0.49479 0.76877 1.15654 1.42975 1.49318 1.74942 1.84688 1.89778 1.97168 2.20195 2.61782 2.84853 3.10651 3.23622 3.38319 3.39608 3.50060 3.51585 3.64787 3.77212 3.80915 3.89993 3.91936 3.99154 4.01275 4.05713 4.20237 4.23913 4.29965 4.31313 4.33941 4.39762 4.43911 4.50943 4.57320 4.62777 4.66115 4.67827 4.72190 4.75436 4.78381 4.82402 4.88293 4.99747 5.01583 5.04059 5.08524 5.13130 5.14940 5.20398 5.35638 5.43731 5.48361 5.50247 5.53999 5.61495 5.86540 5.98780 6.39037 6.47672 6.61019 6.72357 7.09745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.028 4.028 3 Si 0.772 3.228 4 C -0.056 4.056 5 C -0.183 4.183 6 C -0.190 4.190 7 C 0.024 3.976 8 C -0.041 4.041 9 C -0.050 4.050 10 C -0.180 4.180 11 C 0.560 3.440 12 O -0.557 6.557 13 N -0.700 5.700 14 C 0.115 3.885 15 H 0.091 0.909 16 C -0.119 4.119 17 C -0.103 4.103 18 H 0.106 0.894 19 C 0.065 3.935 20 O -0.328 6.328 21 C 0.113 3.887 22 C -0.219 4.219 23 C -0.089 4.089 24 C -0.170 4.170 25 C -0.087 4.087 26 C -0.173 4.173 27 C -0.146 4.146 28 C 0.165 3.835 29 O -0.495 6.495 30 C -0.147 4.147 31 C -0.045 4.045 32 O -0.171 6.171 33 H 0.399 0.601 34 H 0.135 0.865 35 H -0.284 1.284 36 H -0.282 1.282 37 H 0.160 0.840 38 H 0.174 0.826 39 H 0.150 0.850 40 H 0.411 0.589 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.146 0.854 49 H 0.133 0.867 50 H 0.059 0.941 51 H 0.095 0.905 52 H 0.411 0.589 53 H 0.164 0.836 54 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 -0.309 -3.140 3.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.139 4.139 3 Si 0.676 3.324 4 C -0.105 4.105 5 C -0.202 4.202 6 C -0.209 4.209 7 C -0.026 4.026 8 C -0.042 4.042 9 C -0.069 4.069 10 C -0.184 4.184 11 C 0.348 3.652 12 O -0.437 6.437 13 N -0.352 5.352 14 C 0.009 3.991 15 H 0.109 0.891 16 C -0.157 4.157 17 C -0.122 4.122 18 H 0.124 0.876 19 C -0.010 4.010 20 O -0.242 6.242 21 C 0.068 3.932 22 C -0.238 4.238 23 C -0.107 4.107 24 C -0.188 4.188 25 C -0.105 4.105 26 C -0.191 4.191 27 C -0.185 4.185 28 C 0.118 3.882 29 O -0.309 6.309 30 C -0.165 4.165 31 C -0.063 4.063 32 O -0.068 6.068 33 H 0.249 0.751 34 H 0.152 0.848 35 H -0.210 1.210 36 H -0.209 1.209 37 H 0.178 0.822 38 H 0.192 0.808 39 H 0.168 0.832 40 H 0.249 0.751 41 H 0.132 0.868 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.159 0.841 46 H 0.160 0.840 47 H 0.158 0.842 48 H 0.164 0.836 49 H 0.150 0.850 50 H 0.078 0.922 51 H 0.114 0.886 52 H 0.271 0.729 53 H 0.181 0.819 54 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.766 0.371 -3.084 3.199 hybrid contribution 0.388 -0.833 -0.560 1.076 sum 1.154 -0.462 -3.644 3.851 Atomic orbital electron populations 1.86533 1.16107 1.82138 1.50297 1.24488 0.85318 1.11388 0.92673 0.93412 0.78354 0.75281 0.85398 1.23105 1.00897 0.94131 0.92413 1.21795 1.04034 0.95970 0.98443 1.22154 1.02235 0.99085 0.97421 1.20426 1.03648 0.87715 0.90790 1.17690 1.00469 0.94490 0.91503 1.21411 0.93795 0.97269 0.94441 1.20247 1.06797 0.94124 0.97207 1.18249 0.79086 0.84657 0.83197 1.90809 1.42151 1.84892 1.25798 1.45532 1.57732 1.07967 1.24000 1.21850 0.97337 0.81011 0.98877 0.89101 1.23289 0.95556 0.98955 0.97928 1.22659 0.98462 0.93982 0.97049 0.87615 1.23008 0.79242 0.96461 1.02250 1.86055 1.28036 1.23694 1.86453 1.19249 0.94191 0.83542 0.96248 1.21507 0.99799 0.94182 1.08276 1.21307 0.97001 0.95744 0.96686 1.21417 0.93205 1.00720 1.03452 1.21295 1.00902 0.91759 0.96568 1.20709 0.93794 0.97748 1.06874 1.23563 0.99026 0.99249 0.96660 1.18886 0.93554 0.91455 0.84309 1.84706 1.25185 1.92465 1.28497 1.21575 1.00456 0.96467 0.98004 1.21424 0.94183 0.99286 0.91369 1.83892 1.58109 1.38277 1.26556 0.75053 0.84772 1.21046 1.20901 0.82194 0.80844 0.83249 0.75093 0.86754 0.88863 0.91138 0.90578 0.84079 0.83986 0.84230 0.83606 0.84955 0.92234 0.88610 0.72852 0.81854 0.81751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.15 12.88 -148.98 -1.92 -0.77 16 2 C -0.03 0.07 2.98 71.24 0.21 0.28 16 3 Si 0.77 -2.37 32.11 68.60 2.20 -0.16 16 4 C -0.06 0.02 6.20 24.88 0.15 0.17 16 5 C -0.18 0.03 10.78 22.13 0.24 0.27 16 6 C -0.19 0.26 10.26 22.41 0.23 0.49 16 7 C 0.02 0.00 7.03 24.27 0.17 0.17 16 8 C -0.04 0.05 5.87 -20.13 -0.12 -0.07 16 9 C -0.05 0.05 9.20 22.79 0.21 0.25 16 10 C -0.18 -0.53 5.88 -20.04 -0.12 -0.65 16 11 C 0.56 3.38 7.76 86.70 0.67 4.06 16 12 O -0.56 -7.61 14.76 17.00 0.25 -7.36 16 13 N -0.70 0.19 5.21 -443.16 -2.31 -2.12 16 14 C 0.11 -0.11 4.30 45.52 0.20 0.09 16 15 H 0.09 0.26 7.50 -2.39 -0.02 0.24 16 16 C -0.12 0.80 7.38 31.12 0.23 1.03 16 17 C -0.10 0.44 3.90 -10.18 -0.04 0.41 16 18 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 19 C 0.06 -0.17 4.58 71.98 0.33 0.16 16 20 O -0.33 -1.25 10.14 -92.46 -0.94 -2.19 16 21 C 0.11 0.52 6.69 22.51 0.15 0.67 16 22 C -0.22 -0.44 9.04 22.37 0.20 -0.23 16 23 C -0.09 -0.09 10.04 22.25 0.22 0.13 16 24 C -0.17 -0.18 10.04 22.28 0.22 0.04 16 25 C -0.09 -0.15 10.04 22.25 0.22 0.07 16 26 C -0.17 -0.72 9.99 22.37 0.22 -0.49 16 27 C -0.15 0.11 7.45 31.22 0.23 0.34 16 28 C 0.16 0.47 6.72 22.89 0.15 0.63 16 29 O -0.49 -2.56 11.55 -68.60 -0.79 -3.35 16 30 C -0.15 0.34 9.96 22.30 0.22 0.56 16 31 C -0.04 0.17 9.54 22.55 0.22 0.39 16 32 O -0.17 -0.04 8.80 -6.51 -0.06 -0.10 16 33 H 0.40 -3.82 8.70 -74.06 -0.64 -4.46 16 34 H 0.14 -0.41 7.96 -2.39 -0.02 -0.43 16 35 H -0.28 -0.65 7.11 99.48 0.71 0.05 16 36 H -0.28 -0.83 7.11 99.48 0.71 -0.13 16 37 H 0.16 -0.33 8.06 -2.91 -0.02 -0.35 16 38 H 0.17 -1.10 7.25 -2.91 -0.02 -1.12 16 39 H 0.15 -0.75 6.24 -2.91 -0.02 -0.77 16 40 H 0.41 -2.21 6.73 -92.70 -0.62 -2.83 16 41 H 0.11 -1.03 8.10 -2.38 -0.02 -1.05 16 42 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H 0.07 -0.27 7.36 -2.38 -0.02 -0.28 16 44 H 0.08 -0.38 7.67 -2.39 -0.02 -0.39 16 45 H 0.14 -0.30 6.30 -2.91 -0.02 -0.32 16 46 H 0.14 -0.48 8.06 -2.91 -0.02 -0.51 16 47 H 0.14 -0.40 8.06 -2.91 -0.02 -0.43 16 48 H 0.15 -0.39 8.06 -2.91 -0.02 -0.42 16 49 H 0.13 0.33 8.06 -2.91 -0.02 0.30 16 50 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 51 H 0.10 -0.12 7.91 -2.39 -0.02 -0.14 16 52 H 0.41 -0.87 9.06 -74.06 -0.67 -1.54 16 53 H 0.16 -1.04 8.06 -2.91 -0.02 -1.06 16 54 H 0.17 -1.53 6.96 -2.91 -0.02 -1.55 16 Total: 0.00 -25.62 455.80 -0.04 -25.65 By element: Atomic # 1 Polarization: -17.46 SS G_CDS: -0.91 Total: -18.37 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 4.44 Total: 8.77 kcal Atomic # 7 Polarization: 0.19 SS G_CDS: -2.31 Total: -2.12 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -3.45 Total: -13.77 kcal Atomic # 14 Polarization: -2.37 SS G_CDS: 2.20 Total: -0.16 kcal Total: -25.62 -0.04 -25.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_13259648.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.943 kcal (2) G-P(sol) polarization free energy of solvation -25.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds