Wall clock time and date at job start Sun Mar 7 2021 05:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.46826 * 2 1 4 4 C 1.50694 * 109.47240 * 240.00364 * 2 1 3 5 5 C 1.38552 * 120.32898 * 120.02074 * 4 2 1 6 6 N 1.31525 * 120.90445 * 179.71987 * 5 4 2 7 7 C 1.32708 * 121.64225 * 0.52585 * 6 5 4 8 8 C 1.48177 * 119.72404 * 179.75543 * 7 6 5 9 9 O 1.21512 * 119.99961 * 179.72541 * 8 7 6 10 10 N 1.34776 * 119.99571 * 359.71571 * 8 7 6 11 11 C 1.46506 * 119.99649 * 179.97438 * 10 8 7 12 12 H 1.09007 * 112.84595 * 23.81259 * 11 10 8 13 13 C 1.53779 * 113.61276 * 155.00300 * 11 10 8 14 14 C 1.53787 * 87.07963 * 89.20243 * 13 11 10 15 15 H 1.08994 * 113.61447 * 270.88515 * 14 13 11 16 16 C 1.52997 * 113.61251 * 139.97890 * 14 13 11 17 17 O 1.42902 * 109.47204 * 175.00256 * 16 14 13 18 18 C 1.35895 * 117.00232 * 180.02562 * 17 16 14 19 19 C 1.38732 * 120.05745 * 359.72162 * 18 17 16 20 20 C 1.38145 * 119.94389 * 179.74488 * 19 18 17 21 21 C 1.38265 * 120.05715 * 0.51445 * 20 19 18 22 22 C 1.38267 * 120.10964 * 359.76226 * 21 20 19 23 23 C 1.38141 * 120.05657 * 359.97438 * 22 21 20 24 24 C 1.53779 * 113.69339 * 252.54233 * 11 10 8 25 25 C 1.39311 * 120.55628 * 359.47334 * 7 6 5 26 26 C 1.38592 * 119.05688 * 0.25878 * 25 7 6 27 27 H 0.96702 * 114.00327 * 60.00254 * 1 2 3 28 28 H 1.08992 * 109.47213 * 119.99696 * 2 1 3 29 29 H 1.48498 * 110.00207 * 59.99945 * 3 2 1 30 30 H 1.48494 * 110.00046 * 181.32070 * 3 2 1 31 31 H 1.07999 * 119.54822 * 359.97438 * 5 4 2 32 32 H 0.96998 * 120.00727 * 0.02562 * 10 8 7 33 33 H 1.08997 * 113.61646 * 334.65874 * 13 11 10 34 34 H 1.08998 * 113.69354 * 203.76183 * 13 11 10 35 35 H 1.08998 * 109.47573 * 295.00161 * 16 14 13 36 36 H 1.09003 * 109.47157 * 55.00680 * 16 14 13 37 37 H 1.08004 * 120.02818 * 0.02562 * 19 18 17 38 38 H 1.08004 * 119.96910 * 180.27609 * 20 19 18 39 39 H 1.08002 * 119.94420 * 179.74500 * 21 20 19 40 40 H 1.07997 * 119.96971 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.02821 * 179.97438 * 23 22 21 42 42 H 1.09002 * 113.61557 * 156.32618 * 24 11 10 43 43 H 1.09004 * 113.61501 * 25.42039 * 24 11 10 44 44 H 1.08002 * 120.47056 * 180.23373 * 25 7 6 45 45 H 1.07996 * 120.75311 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2304 5 6 2.7286 -0.0436 -2.1467 6 7 3.1778 -0.6541 -3.2216 7 6 2.8803 -1.9218 -3.4778 8 6 3.4051 -2.5661 -4.7046 9 8 3.1399 -3.7280 -4.9416 10 7 4.1763 -1.8632 -5.5577 11 6 4.6956 -2.5004 -6.7704 12 1 4.0954 -3.3519 -7.0913 13 6 5.0104 -1.5074 -7.9015 14 6 6.4201 -1.3887 -7.2986 15 1 6.5066 -0.6107 -6.5402 16 6 7.5319 -1.3241 -8.3476 17 8 8.7856 -1.0988 -7.6999 18 6 9.8845 -1.0143 -8.4949 19 6 9.7596 -1.1513 -9.8698 20 6 10.8775 -1.0597 -10.6762 21 6 12.1216 -0.8423 -10.1133 22 6 12.2495 -0.7111 -8.7428 23 6 11.1339 -0.7965 -7.9325 24 6 6.2039 -2.7954 -6.7160 25 6 2.0836 -2.6536 -2.6001 26 6 1.6005 -2.0375 -1.4565 27 1 -0.3934 0.4417 -0.7651 28 1 1.7923 -0.5137 0.8899 29 1 1.5614 2.4679 1.2085 30 1 3.5344 1.7704 -0.0322 31 1 2.9883 0.9904 -1.9737 32 1 4.3882 -0.9358 -5.3684 33 1 4.4327 -0.5847 -7.8459 34 1 4.9967 -1.9561 -8.8948 35 1 7.5700 -2.2658 -8.8952 36 1 7.3297 -0.5082 -9.0416 37 1 8.7886 -1.3248 -10.3097 38 1 10.7802 -1.1618 -11.7470 39 1 12.9949 -0.7751 -10.7452 40 1 13.2222 -0.5410 -8.3056 41 1 11.2344 -0.6944 -6.8621 42 1 6.5163 -3.5977 -7.3846 43 1 6.5897 -2.9127 -5.7033 44 1 1.8455 -3.6863 -2.8080 45 1 0.9802 -2.5789 -0.7576 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534226_13287726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:12:43 Heat of formation + Delta-G solvation = -8.389630 kcal Electronic energy + Delta-G solvation = -27662.990075 eV Core-core repulsion = 23613.421178 eV Total energy + Delta-G solvation = -4049.568897 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.98081 -41.30005 -40.66072 -39.34916 -38.09893 -37.94128 -34.72872 -33.61798 -33.00464 -31.97698 -31.02448 -29.27323 -27.79514 -26.84852 -25.11377 -24.75753 -23.84834 -23.27961 -22.55446 -22.06518 -20.34519 -19.39412 -19.09270 -18.69299 -17.76661 -17.35447 -16.93335 -16.86345 -16.69053 -16.64831 -16.43721 -16.24638 -15.98336 -15.61041 -15.35197 -15.07476 -14.84930 -14.55648 -14.42274 -14.33534 -14.28047 -13.99568 -13.65680 -13.60730 -13.46406 -13.13889 -12.67688 -12.50921 -12.20136 -12.16259 -12.07887 -11.74812 -11.65392 -11.35863 -11.27297 -11.11781 -10.72812 -10.67833 -10.33542 -10.06847 -9.92172 -9.11773 -5.20494 -0.60956 0.02060 0.42252 0.54204 1.07156 1.46046 1.59596 1.82703 1.92250 2.17054 2.66098 2.88650 2.89473 3.21734 3.32047 3.39252 3.41182 3.58043 3.67248 3.71616 3.73985 3.89457 3.90965 3.95999 4.09163 4.15235 4.23602 4.27085 4.27763 4.32783 4.48954 4.49412 4.55978 4.57008 4.60292 4.67317 4.74644 4.83118 4.92340 4.94831 4.96967 5.07351 5.09267 5.31648 5.38323 5.49317 5.50575 5.64052 5.85745 6.28389 6.35203 6.49331 6.59069 7.10219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.067 4.067 3 Si 0.688 3.312 4 C -0.150 4.150 5 C 0.103 3.897 6 N -0.453 5.453 7 C 0.080 3.920 8 C 0.576 3.424 9 O -0.526 6.526 10 N -0.694 5.694 11 C 0.118 3.882 12 H 0.109 0.891 13 C -0.135 4.135 14 C -0.111 4.111 15 H 0.103 0.897 16 C 0.069 3.931 17 O -0.313 6.313 18 C 0.130 3.870 19 C -0.211 4.211 20 C -0.080 4.080 21 C -0.160 4.160 22 C -0.080 4.080 23 C -0.154 4.154 24 C -0.144 4.144 25 C -0.107 4.107 26 C -0.053 4.053 27 H 0.381 0.619 28 H 0.121 0.879 29 H -0.249 1.249 30 H -0.252 1.252 31 H 0.164 0.836 32 H 0.413 0.587 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.153 0.847 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 3.548 -1.993 4.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.178 4.178 3 Si 0.589 3.411 4 C -0.152 4.152 5 C -0.056 4.056 6 N -0.164 5.164 7 C -0.058 4.058 8 C 0.361 3.639 9 O -0.402 6.402 10 N -0.345 5.345 11 C 0.013 3.987 12 H 0.127 0.873 13 C -0.173 4.173 14 C -0.129 4.129 15 H 0.121 0.879 16 C -0.006 4.006 17 O -0.227 6.227 18 C 0.084 3.916 19 C -0.229 4.229 20 C -0.098 4.098 21 C -0.178 4.178 22 C -0.098 4.098 23 C -0.173 4.173 24 C -0.183 4.183 25 C -0.128 4.128 26 C -0.079 4.079 27 H 0.229 0.771 28 H 0.138 0.862 29 H -0.173 1.173 30 H -0.177 1.177 31 H 0.181 0.819 32 H 0.249 0.751 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.113 0.887 43 H 0.095 0.905 44 H 0.171 0.829 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.140 3.429 -1.608 3.790 hybrid contribution -0.323 -0.614 0.634 0.940 sum -0.463 2.816 -0.974 3.015 Atomic orbital electron populations 1.86537 1.16587 1.81658 1.49358 1.25050 0.85601 1.10438 0.96748 0.94773 0.81186 0.77241 0.87914 1.21666 0.99117 0.96057 0.98366 1.22621 0.94050 0.99671 0.89308 1.67506 1.20215 1.09133 1.19513 1.21135 0.97958 0.90768 0.95945 1.17841 0.78218 0.85602 0.82225 1.90821 1.58659 1.16001 1.74672 1.45481 1.50646 1.16132 1.22209 1.21859 0.95269 0.96994 0.84617 0.87289 1.23329 0.94877 1.00369 0.98711 1.22657 0.92766 0.99302 0.98189 0.87866 1.22858 0.81243 1.01010 0.95483 1.86080 1.14242 1.86808 1.35543 1.19036 0.87180 0.95903 0.89452 1.21274 1.00168 1.08821 0.92683 1.20994 0.92167 0.96950 0.99734 1.21118 0.97693 1.03776 0.95214 1.21021 0.98040 0.97243 0.93538 1.20487 0.89911 1.06078 1.00778 1.23518 0.95505 0.96589 1.02668 1.22232 0.95248 1.02074 0.93218 1.21562 0.96400 0.93612 0.96301 0.77117 0.86165 1.17331 1.17708 0.81907 0.75050 0.89946 0.88088 0.91646 0.91718 0.85541 0.85734 0.85805 0.85277 0.85226 0.88702 0.90529 0.82936 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.82 12.78 -35.23 -0.45 0.37 16 2 C -0.07 0.14 2.83 36.00 0.10 0.24 16 3 Si 0.69 -1.90 29.82 -169.99 -5.07 -6.96 16 4 C -0.15 0.19 5.40 -104.36 -0.56 -0.37 16 5 C 0.10 -0.10 9.84 -17.57 -0.17 -0.28 16 6 N -0.45 -0.31 9.54 -9.80 -0.09 -0.40 16 7 C 0.08 0.13 6.75 -83.01 -0.56 -0.43 16 8 C 0.58 1.54 7.81 -12.18 -0.10 1.45 16 9 O -0.53 -2.94 15.92 5.36 0.09 -2.85 16 10 N -0.69 -0.22 5.26 -53.85 -0.28 -0.50 16 11 C 0.12 -0.06 4.32 -67.12 -0.29 -0.35 16 12 H 0.11 0.07 7.46 -51.93 -0.39 -0.32 16 13 C -0.13 0.36 7.39 -25.92 -0.19 0.17 16 14 C -0.11 0.17 3.89 -89.80 -0.35 -0.18 16 15 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 16 C 0.07 -0.05 4.58 37.16 0.17 0.12 16 17 O -0.31 -0.69 10.14 -19.41 -0.20 -0.89 16 18 C 0.13 0.32 6.69 -39.21 -0.26 0.06 16 19 C -0.21 -0.28 9.04 -39.43 -0.36 -0.63 16 20 C -0.08 -0.07 10.04 -39.61 -0.40 -0.47 16 21 C -0.16 -0.15 10.04 -39.56 -0.40 -0.54 16 22 C -0.08 -0.09 10.04 -39.61 -0.40 -0.49 16 23 C -0.15 -0.32 9.99 -39.43 -0.39 -0.72 16 24 C -0.14 0.08 7.43 -25.92 -0.19 -0.11 16 25 C -0.11 -0.07 9.63 -39.05 -0.38 -0.45 16 26 C -0.05 0.04 9.76 -39.30 -0.38 -0.35 16 27 H 0.38 -2.02 8.70 45.56 0.40 -1.63 16 28 H 0.12 -0.22 7.96 -51.93 -0.41 -0.63 16 29 H -0.25 -0.17 7.11 56.52 0.40 0.24 16 30 H -0.25 0.13 7.11 56.52 0.40 0.53 16 31 H 0.16 -0.54 4.89 -52.49 -0.26 -0.80 16 32 H 0.41 -0.40 8.03 -40.82 -0.33 -0.72 16 33 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 34 H 0.10 -0.37 8.10 -51.93 -0.42 -0.80 16 35 H 0.07 -0.10 7.35 -51.93 -0.38 -0.48 16 36 H 0.06 -0.10 7.67 -51.93 -0.40 -0.50 16 37 H 0.13 -0.07 6.30 -52.48 -0.33 -0.40 16 38 H 0.12 -0.13 8.06 -52.48 -0.42 -0.56 16 39 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 40 H 0.13 -0.13 8.06 -52.49 -0.42 -0.55 16 41 H 0.13 0.15 8.06 -52.49 -0.42 -0.27 16 42 H 0.09 -0.11 7.90 -51.93 -0.41 -0.52 16 43 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 44 H 0.15 0.06 7.64 -52.49 -0.40 -0.35 16 45 H 0.15 -0.29 8.06 -52.49 -0.42 -0.72 16 LS Contribution 379.87 15.07 5.72 5.72 Total: 0.00 -8.12 379.87 -11.30 -19.42 By element: Atomic # 1 Polarization: -4.66 SS G_CDS: -5.91 Total: -10.58 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -5.11 Total: -3.33 kcal Atomic # 7 Polarization: -0.53 SS G_CDS: -0.38 Total: -0.90 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: -0.56 Total: -3.37 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: -5.07 Total: -6.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -8.12 -11.30 -19.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_13287726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.031 kcal (2) G-P(sol) polarization free energy of solvation -8.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds