Wall clock time and date at job start Sun Mar 7 2021 05:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.46826 * 2 1 4 4 C 1.50694 * 109.47240 * 240.00364 * 2 1 3 5 5 C 1.38552 * 120.32898 * 120.02074 * 4 2 1 6 6 N 1.31525 * 120.90445 * 179.71987 * 5 4 2 7 7 C 1.32708 * 121.64225 * 0.52585 * 6 5 4 8 8 C 1.48177 * 119.72404 * 179.75543 * 7 6 5 9 9 O 1.21512 * 119.99961 * 179.72541 * 8 7 6 10 10 N 1.34776 * 119.99571 * 359.71571 * 8 7 6 11 11 C 1.46506 * 119.99649 * 179.97438 * 10 8 7 12 12 H 1.09007 * 112.84595 * 23.81259 * 11 10 8 13 13 C 1.53779 * 113.61276 * 155.00300 * 11 10 8 14 14 C 1.53787 * 87.07963 * 89.20243 * 13 11 10 15 15 H 1.08994 * 113.61447 * 270.88515 * 14 13 11 16 16 C 1.52997 * 113.61251 * 139.97890 * 14 13 11 17 17 O 1.42902 * 109.47204 * 175.00256 * 16 14 13 18 18 C 1.35895 * 117.00232 * 180.02562 * 17 16 14 19 19 C 1.38732 * 120.05745 * 359.72162 * 18 17 16 20 20 C 1.38145 * 119.94389 * 179.74488 * 19 18 17 21 21 C 1.38265 * 120.05715 * 0.51445 * 20 19 18 22 22 C 1.38267 * 120.10964 * 359.76226 * 21 20 19 23 23 C 1.38141 * 120.05657 * 359.97438 * 22 21 20 24 24 C 1.53779 * 113.69339 * 252.54233 * 11 10 8 25 25 C 1.39311 * 120.55628 * 359.47334 * 7 6 5 26 26 C 1.38592 * 119.05688 * 0.25878 * 25 7 6 27 27 H 0.96702 * 114.00327 * 60.00254 * 1 2 3 28 28 H 1.08992 * 109.47213 * 119.99696 * 2 1 3 29 29 H 1.48498 * 110.00207 * 59.99945 * 3 2 1 30 30 H 1.48494 * 110.00046 * 181.32070 * 3 2 1 31 31 H 1.07999 * 119.54822 * 359.97438 * 5 4 2 32 32 H 0.96998 * 120.00727 * 0.02562 * 10 8 7 33 33 H 1.08997 * 113.61646 * 334.65874 * 13 11 10 34 34 H 1.08998 * 113.69354 * 203.76183 * 13 11 10 35 35 H 1.08998 * 109.47573 * 295.00161 * 16 14 13 36 36 H 1.09003 * 109.47157 * 55.00680 * 16 14 13 37 37 H 1.08004 * 120.02818 * 0.02562 * 19 18 17 38 38 H 1.08004 * 119.96910 * 180.27609 * 20 19 18 39 39 H 1.08002 * 119.94420 * 179.74500 * 21 20 19 40 40 H 1.07997 * 119.96971 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.02821 * 179.97438 * 23 22 21 42 42 H 1.09002 * 113.61557 * 156.32618 * 24 11 10 43 43 H 1.09004 * 113.61501 * 25.42039 * 24 11 10 44 44 H 1.08002 * 120.47056 * 180.23373 * 25 7 6 45 45 H 1.07996 * 120.75311 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2304 5 6 2.7286 -0.0436 -2.1467 6 7 3.1778 -0.6541 -3.2216 7 6 2.8803 -1.9218 -3.4778 8 6 3.4051 -2.5661 -4.7046 9 8 3.1399 -3.7280 -4.9416 10 7 4.1763 -1.8632 -5.5577 11 6 4.6956 -2.5004 -6.7704 12 1 4.0954 -3.3519 -7.0913 13 6 5.0104 -1.5074 -7.9015 14 6 6.4201 -1.3887 -7.2986 15 1 6.5066 -0.6107 -6.5402 16 6 7.5319 -1.3241 -8.3476 17 8 8.7856 -1.0988 -7.6999 18 6 9.8845 -1.0143 -8.4949 19 6 9.7596 -1.1513 -9.8698 20 6 10.8775 -1.0597 -10.6762 21 6 12.1216 -0.8423 -10.1133 22 6 12.2495 -0.7111 -8.7428 23 6 11.1339 -0.7965 -7.9325 24 6 6.2039 -2.7954 -6.7160 25 6 2.0836 -2.6536 -2.6001 26 6 1.6005 -2.0375 -1.4565 27 1 -0.3934 0.4417 -0.7651 28 1 1.7923 -0.5137 0.8899 29 1 1.5614 2.4679 1.2085 30 1 3.5344 1.7704 -0.0322 31 1 2.9883 0.9904 -1.9737 32 1 4.3882 -0.9358 -5.3684 33 1 4.4327 -0.5847 -7.8459 34 1 4.9967 -1.9561 -8.8948 35 1 7.5700 -2.2658 -8.8952 36 1 7.3297 -0.5082 -9.0416 37 1 8.7886 -1.3248 -10.3097 38 1 10.7802 -1.1618 -11.7470 39 1 12.9949 -0.7751 -10.7452 40 1 13.2222 -0.5410 -8.3056 41 1 11.2344 -0.6944 -6.8621 42 1 6.5163 -3.5977 -7.3846 43 1 6.5897 -2.9127 -5.7033 44 1 1.8455 -3.6863 -2.8080 45 1 0.9802 -2.5789 -0.7576 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534226_13287726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:12:42 Heat of formation + Delta-G solvation = -6.506358 kcal Electronic energy + Delta-G solvation = -27662.908411 eV Core-core repulsion = 23613.421178 eV Total energy + Delta-G solvation = -4049.487232 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.01236 -41.29562 -40.69733 -39.42073 -38.11210 -37.86080 -34.80851 -33.60066 -32.98988 -32.00830 -31.04676 -29.26487 -27.75213 -26.75222 -25.08063 -24.73834 -23.84159 -23.31491 -22.55581 -22.10897 -20.33523 -19.43576 -19.11616 -18.60589 -17.73642 -17.34982 -16.93377 -16.87435 -16.67834 -16.63009 -16.44322 -16.27576 -15.95886 -15.59247 -15.37771 -15.08561 -14.85165 -14.56092 -14.37575 -14.34958 -14.26836 -14.02027 -13.57543 -13.51536 -13.47311 -13.13365 -12.55805 -12.50951 -12.19709 -12.11827 -12.06508 -11.71578 -11.65098 -11.49139 -11.21055 -11.09058 -10.71558 -10.61337 -10.34930 -10.09760 -9.97235 -9.17997 -5.01238 -0.63119 0.05464 0.37324 0.47709 1.23902 1.48475 1.62931 1.87716 1.96995 2.18736 2.63113 2.83150 2.90281 3.39466 3.41284 3.49401 3.50228 3.62070 3.74811 3.78617 3.79011 3.90323 3.93236 3.97943 4.10459 4.22277 4.28667 4.31888 4.40094 4.43235 4.49418 4.54821 4.56069 4.63142 4.70843 4.74266 4.78307 4.88017 4.96602 4.98313 5.02679 5.06777 5.12217 5.34001 5.35481 5.46705 5.50119 5.59757 5.85143 6.22978 6.46130 6.57550 6.70958 6.99385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.069 4.069 3 Si 0.774 3.226 4 C -0.141 4.141 5 C 0.101 3.899 6 N -0.459 5.459 7 C 0.063 3.937 8 C 0.572 3.428 9 O -0.565 6.565 10 N -0.683 5.683 11 C 0.110 3.890 12 H 0.096 0.904 13 C -0.117 4.117 14 C -0.104 4.104 15 H 0.099 0.901 16 C 0.065 3.935 17 O -0.331 6.331 18 C 0.112 3.888 19 C -0.218 4.218 20 C -0.088 4.088 21 C -0.169 4.169 22 C -0.087 4.087 23 C -0.175 4.175 24 C -0.145 4.145 25 C -0.115 4.115 26 C -0.053 4.053 27 H 0.398 0.602 28 H 0.119 0.881 29 H -0.296 1.296 30 H -0.279 1.279 31 H 0.187 0.813 32 H 0.419 0.581 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.130 0.870 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.149 0.851 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 4.576 -2.804 5.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.179 4.179 3 Si 0.680 3.320 4 C -0.144 4.144 5 C -0.059 4.059 6 N -0.170 5.170 7 C -0.075 4.075 8 C 0.357 3.643 9 O -0.444 6.444 10 N -0.334 5.334 11 C 0.004 3.996 12 H 0.114 0.886 13 C -0.155 4.155 14 C -0.122 4.122 15 H 0.117 0.883 16 C -0.009 4.009 17 O -0.246 6.246 18 C 0.067 3.933 19 C -0.236 4.236 20 C -0.106 4.106 21 C -0.187 4.187 22 C -0.105 4.105 23 C -0.193 4.193 24 C -0.184 4.184 25 C -0.136 4.136 26 C -0.079 4.079 27 H 0.248 0.752 28 H 0.137 0.863 29 H -0.223 1.223 30 H -0.206 1.206 31 H 0.203 0.797 32 H 0.258 0.742 33 H 0.111 0.889 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.164 0.836 41 H 0.148 0.852 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.167 0.833 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.297 4.469 -2.457 5.109 hybrid contribution -0.275 -0.903 0.959 1.346 sum -0.572 3.566 -1.498 3.910 Atomic orbital electron populations 1.86508 1.16621 1.82105 1.50610 1.25159 0.85660 1.10936 0.96193 0.93766 0.78117 0.74612 0.85546 1.21776 0.98435 0.95775 0.98390 1.23018 0.93569 1.00577 0.88728 1.67495 1.20541 1.08712 1.20296 1.21055 0.98995 0.91422 0.96004 1.18096 0.78166 0.85276 0.82733 1.90788 1.60345 1.17552 1.75681 1.45474 1.49635 1.16259 1.21998 1.21955 0.94900 0.97553 0.85146 0.88582 1.23283 0.93618 1.00107 0.98461 1.22592 0.93335 0.98261 0.98057 0.88293 1.23022 0.80265 1.01879 0.95746 1.86054 1.15047 1.86991 1.36461 1.19261 0.87374 0.96566 0.90135 1.21515 1.01217 1.08587 0.92321 1.21323 0.92060 0.96406 1.00823 1.21427 0.98497 1.03400 0.95395 1.21288 0.98514 0.96881 0.93846 1.20699 0.90518 1.06978 1.01147 1.23527 0.95373 0.97659 1.01843 1.22284 0.95495 1.02067 0.93733 1.21729 0.96244 0.93984 0.95905 0.75197 0.86323 1.22342 1.20555 0.79671 0.74249 0.88893 0.86392 0.90841 0.90526 0.83926 0.83798 0.84107 0.83644 0.85247 0.88146 0.92417 0.83335 0.82139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.24 12.78 -148.98 -1.90 0.33 16 2 C -0.07 0.34 2.83 71.23 0.20 0.54 16 3 Si 0.77 -4.76 29.82 68.60 2.05 -2.71 16 4 C -0.14 0.44 5.40 -19.70 -0.11 0.34 16 5 C 0.10 -0.26 9.84 84.81 0.83 0.57 16 6 N -0.46 -0.71 9.54 -184.91 -1.76 -2.48 16 7 C 0.06 0.27 6.75 41.91 0.28 0.56 16 8 C 0.57 4.05 7.81 86.88 0.68 4.73 16 9 O -0.57 -7.65 15.92 -3.75 -0.06 -7.71 16 10 N -0.68 -1.19 5.26 -442.58 -2.33 -3.51 16 11 C 0.11 -0.02 4.32 45.52 0.20 0.18 16 12 H 0.10 0.27 7.46 -2.38 -0.02 0.25 16 13 C -0.12 0.69 7.39 31.12 0.23 0.92 16 14 C -0.10 0.31 3.89 -10.27 -0.04 0.27 16 15 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 16 C 0.07 -0.12 4.58 71.98 0.33 0.21 16 17 O -0.33 -1.69 10.14 -92.37 -0.94 -2.62 16 18 C 0.11 0.62 6.69 22.51 0.15 0.77 16 19 C -0.22 -0.51 9.04 22.37 0.20 -0.31 16 20 C -0.09 -0.10 10.04 22.25 0.22 0.12 16 21 C -0.17 -0.23 10.04 22.28 0.22 0.00 16 22 C -0.09 -0.21 10.04 22.25 0.22 0.02 16 23 C -0.17 -0.90 9.99 22.37 0.22 -0.68 16 24 C -0.15 0.02 7.43 31.12 0.23 0.25 16 25 C -0.11 -0.28 9.63 22.61 0.22 -0.06 16 26 C -0.05 0.07 9.76 22.45 0.22 0.29 16 27 H 0.40 -4.75 8.70 -74.06 -0.64 -5.39 16 28 H 0.12 -0.51 7.96 -2.39 -0.02 -0.53 16 29 H -0.30 -0.56 7.11 99.48 0.71 0.15 16 30 H -0.28 0.45 7.11 99.48 0.71 1.16 16 31 H 0.19 -1.48 4.89 -2.91 -0.01 -1.49 16 32 H 0.42 -0.54 8.03 -92.71 -0.74 -1.29 16 33 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H 0.12 -1.05 8.10 -2.39 -0.02 -1.07 16 35 H 0.07 -0.26 7.35 -2.39 -0.02 -0.28 16 36 H 0.08 -0.32 7.67 -2.39 -0.02 -0.34 16 37 H 0.14 -0.28 6.30 -2.91 -0.02 -0.30 16 38 H 0.14 -0.50 8.06 -2.91 -0.02 -0.53 16 39 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 40 H 0.15 -0.30 8.06 -2.91 -0.02 -0.32 16 41 H 0.13 0.50 8.06 -2.91 -0.02 0.48 16 42 H 0.10 -0.14 7.90 -2.39 -0.02 -0.16 16 43 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.15 0.40 7.64 -2.91 -0.02 0.37 16 45 H 0.16 -0.69 8.06 -2.91 -0.02 -0.71 16 Total: 0.00 -20.42 379.87 -0.74 -21.16 By element: Atomic # 1 Polarization: -10.84 SS G_CDS: -0.32 Total: -11.16 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 4.52 Total: 8.71 kcal Atomic # 7 Polarization: -1.90 SS G_CDS: -4.09 Total: -5.99 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -2.90 Total: -10.00 kcal Atomic # 14 Polarization: -4.76 SS G_CDS: 2.05 Total: -2.71 kcal Total: -20.42 -0.74 -21.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_13287726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.650 kcal (2) G-P(sol) polarization free energy of solvation -20.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds